Wall clock time and date at job start Mon Mar 30 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00253 * 2 1 4 4 H 1.48504 * 109.46910 * 269.99571 * 3 2 1 5 5 H 1.48498 * 109.47337 * 29.99783 * 3 2 1 6 6 H 1.48501 * 109.47128 * 149.99777 * 3 2 1 7 7 C 1.37879 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99947 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99970 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47046 * 180.84620 * 9 7 2 11 11 C 1.46895 * 110.99818 * 306.29731 * 10 9 7 12 12 H 1.09002 * 109.47676 * 51.49746 * 11 10 9 13 13 C 1.53005 * 109.47294 * 291.49467 * 11 10 9 14 14 N 1.46902 * 109.46978 * 62.57537 * 13 11 10 15 15 C 1.50705 * 109.47070 * 171.49692 * 11 10 9 16 16 C 1.38232 * 119.99473 * 39.72651 * 15 11 10 17 17 C 1.38244 * 119.99529 * 179.81239 * 16 15 11 18 18 C 1.38237 * 119.99875 * 0.39475 * 17 16 15 19 19 C 1.38233 * 120.00046 * 359.85960 * 18 17 16 20 20 C 1.38233 * 119.99964 * 219.99872 * 15 11 10 21 21 C 1.46903 * 110.99839 * 70.25327 * 10 9 7 22 22 C 1.52996 * 117.49571 * 117.56458 * 21 10 9 23 23 C 1.52996 * 117.50163 * 48.90017 * 21 10 9 24 24 H 0.97007 * 119.99588 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46997 * 60.84331 * 9 7 2 26 26 H 1.09001 * 109.47013 * 300.84183 * 9 7 2 27 27 H 1.08998 * 109.47060 * 302.57644 * 13 11 10 28 28 H 1.08995 * 109.46769 * 182.57123 * 13 11 10 29 29 H 1.00902 * 111.00104 * 56.04156 * 14 13 11 30 30 H 1.00897 * 111.00131 * 180.02562 * 14 13 11 31 31 H 1.07995 * 120.00629 * 0.02562 * 16 15 11 32 32 H 1.07997 * 120.00130 * 180.23247 * 17 16 15 33 33 H 1.07999 * 119.99829 * 179.83974 * 18 17 16 34 34 H 1.07996 * 120.00279 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.00050 * 359.97438 * 20 15 11 36 36 H 1.09000 * 115.54558 * 263.22506 * 21 10 9 37 37 H 1.09000 * 117.50315 * 359.97438 * 22 21 10 38 38 H 1.09000 * 117.49951 * 145.02016 * 22 21 10 39 39 H 1.08998 * 117.50276 * 214.97679 * 23 21 10 40 40 H 1.09006 * 117.49794 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5791 -0.0188 11 6 3.4106 -3.3620 1.0750 12 1 2.3266 -3.2495 1.0583 13 6 3.9550 -2.8593 2.4136 14 7 3.5544 -1.4597 2.6106 15 6 3.7676 -4.8158 0.9017 16 6 5.0336 -5.1705 0.4747 17 6 5.3622 -6.5043 0.3195 18 6 4.4223 -7.4830 0.5834 19 6 3.1546 -7.1280 1.0053 20 6 2.8272 -5.7944 1.1643 21 6 3.7401 -3.2110 -1.3191 22 6 4.9494 -3.6621 -2.1406 23 6 4.1430 -2.4356 -2.5750 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6934 0.8986 26 1 3.8752 -0.6676 -0.8812 27 1 5.0427 -2.9292 2.4128 28 1 3.5522 -3.4696 3.2218 29 1 2.5523 -1.3586 2.5508 30 1 3.9024 -1.1041 3.4883 31 1 5.7670 -4.4058 0.2657 32 1 6.3524 -6.7816 -0.0104 33 1 4.6782 -8.5249 0.4597 34 1 2.4202 -7.8925 1.2111 35 1 1.8369 -5.5171 1.4940 36 1 2.8392 -3.8223 -1.3723 37 1 5.9386 -3.4896 -1.7166 38 1 4.8440 -4.5698 -2.7347 39 1 3.5074 -2.5370 -3.4546 40 1 4.6021 -1.4567 -2.4364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042899489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:07 Heat of formation + Delta-G solvation = 75.377255 kcal Electronic energy + Delta-G solvation = -20358.356235 eV Core-core repulsion = 17560.407350 eV Total energy + Delta-G solvation = -2797.948884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48915 -37.46843 -35.19455 -32.66912 -31.87595 -30.81185 -30.55941 -27.33705 -25.54014 -22.76202 -22.43700 -21.69117 -21.33844 -20.37445 -18.74657 -17.00999 -16.43394 -15.69239 -15.32178 -14.79246 -14.47196 -14.17322 -13.94348 -13.69432 -13.44283 -13.01692 -12.55752 -12.40686 -12.26897 -11.80387 -11.73556 -11.28864 -11.16426 -10.88796 -10.73178 -10.53473 -10.32170 -10.18983 -10.04186 -9.63339 -9.46458 -9.05265 -8.57901 -8.51523 -8.32757 -7.61758 -7.00106 -5.97951 -3.92235 1.67505 1.74464 3.37301 3.45096 3.54185 4.10989 4.53247 4.60692 4.78474 5.02678 5.22823 5.24805 5.39542 5.41234 5.59496 5.69397 5.73165 5.80167 5.85881 5.89883 5.93405 6.09000 6.21956 6.25789 6.31973 6.38794 6.43351 6.62552 6.73383 6.76769 6.79841 6.81646 7.09320 7.20826 7.33931 7.65620 7.80450 7.83712 8.16369 8.25994 8.37356 8.60159 9.05759 9.67929 11.15087 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024140 B = 0.007095 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.625166 B = 3945.435391 C = 4319.685708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.256 1.256 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.131 3.869 10 N -0.490 5.490 11 C 0.123 3.877 12 H 0.071 0.929 13 C 0.086 3.914 14 N -0.829 5.829 15 C -0.067 4.067 16 C -0.084 4.084 17 C -0.131 4.131 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.117 4.117 21 C 0.044 3.956 22 C -0.181 4.181 23 C -0.176 4.176 24 H 0.259 0.741 25 H 0.095 0.905 26 H 0.011 0.989 27 H 0.067 0.933 28 H 0.017 0.983 29 H 0.357 0.643 30 H 0.322 0.678 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.154 -10.441 2.648 14.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.180 1.180 7 C -0.566 4.566 8 H 0.084 0.916 9 C 0.005 3.995 10 N -0.212 5.212 11 C 0.014 3.986 12 H 0.089 0.911 13 C -0.045 4.045 14 N -0.360 5.360 15 C -0.068 4.068 16 C -0.102 4.102 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.136 4.136 21 C -0.065 4.065 22 C -0.219 4.219 23 C -0.213 4.213 24 H 0.069 0.931 25 H 0.113 0.887 26 H 0.029 0.971 27 H 0.086 0.914 28 H 0.035 0.965 29 H 0.173 0.827 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.934 -10.141 2.090 14.349 hybrid contribution -1.302 0.477 0.434 1.452 sum 8.633 -9.664 2.523 13.202 Atomic orbital electron populations 1.69950 1.06379 1.26584 1.52029 1.24876 0.94468 0.98963 0.94760 0.86844 0.80948 0.83684 0.78234 1.20961 1.22021 1.18025 1.21647 0.91084 0.93796 1.50028 0.91620 1.20949 0.94369 0.84917 0.99293 1.62312 1.56383 1.03692 0.98858 1.20571 0.99011 0.87064 0.91924 0.91133 1.21606 0.99923 0.88725 0.94237 1.58939 1.20397 1.18410 1.38296 1.20042 0.93753 0.95360 0.97600 1.21126 0.96545 0.95583 0.96924 1.21113 0.99093 0.93312 1.01344 1.21019 0.94004 0.98826 1.01088 1.21000 0.96599 0.95914 1.01100 1.21095 0.99238 0.92739 1.00514 1.22065 0.95293 1.00575 0.88596 1.23095 0.97075 0.97562 1.04204 1.22953 1.03595 0.96358 0.98417 0.93115 0.88742 0.97133 0.91440 0.96536 0.82660 0.86677 0.85248 0.86788 0.86978 0.86790 0.86517 0.90558 0.89221 0.90304 0.89892 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.42 27.45 -169.99 -4.67 16.75 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.04 6.57 56.52 0.37 -5.67 16 7 C -0.53 -13.89 7.26 -34.44 -0.25 -14.14 16 8 H 0.07 1.92 6.46 -52.49 -0.34 1.58 16 9 C 0.13 3.02 3.46 -4.97 -0.02 3.00 16 10 N -0.49 -9.75 4.16 -221.52 -0.92 -10.68 16 11 C 0.12 2.29 1.79 -68.86 -0.12 2.16 16 12 H 0.07 1.54 5.67 -51.93 -0.29 1.24 16 13 C 0.09 1.45 6.38 -3.82 -0.02 1.42 16 14 N -0.83 -14.62 6.10 -10.37 -0.06 -14.69 16 15 C -0.07 -1.09 3.81 -104.62 -0.40 -1.49 16 16 C -0.08 -1.26 7.44 -39.58 -0.29 -1.55 16 17 C -0.13 -1.72 10.05 -39.58 -0.40 -2.11 16 18 C -0.13 -1.66 10.05 -39.58 -0.40 -2.05 16 19 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 20 C -0.12 -1.80 9.67 -39.58 -0.38 -2.19 16 21 C 0.04 0.86 3.38 -67.72 -0.23 0.63 16 22 C -0.18 -2.95 8.78 -26.69 -0.23 -3.18 16 23 C -0.18 -3.24 9.64 -26.69 -0.26 -3.50 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.10 2.21 4.43 -51.93 -0.23 1.98 16 26 H 0.01 0.26 5.55 -51.93 -0.29 -0.03 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.36 7.00 7.93 -39.29 -0.31 6.69 16 30 H 0.32 4.74 9.08 -39.29 -0.36 4.39 16 31 H 0.13 2.00 6.71 -52.49 -0.35 1.64 16 32 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.76 8.04 -52.49 -0.42 1.34 16 36 H 0.08 1.62 7.79 -51.93 -0.40 1.22 16 37 H 0.09 1.41 7.62 -51.93 -0.40 1.01 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.09 1.81 6.80 -51.93 -0.35 1.46 16 LS Contribution 310.78 15.07 4.68 4.68 Total: -1.00 -28.85 310.78 -9.57 -38.41 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -5.87 Total: 15.17 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -3.50 Total: -23.26 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.21 Total: -51.76 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.85 -9.57 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042899489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.790 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds