Wall clock time and date at job start Mon Mar 30 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00253 * 2 1 4 4 H 1.48504 * 109.46910 * 269.99571 * 3 2 1 5 5 H 1.48498 * 109.47337 * 29.99783 * 3 2 1 6 6 H 1.48501 * 109.47128 * 149.99777 * 3 2 1 7 7 C 1.37879 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99947 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99970 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47046 * 180.84620 * 9 7 2 11 11 C 1.46895 * 110.99818 * 306.29731 * 10 9 7 12 12 H 1.09002 * 109.47676 * 51.49746 * 11 10 9 13 13 C 1.53005 * 109.47294 * 291.49467 * 11 10 9 14 14 N 1.46902 * 109.46978 * 62.57537 * 13 11 10 15 15 C 1.50705 * 109.47070 * 171.49692 * 11 10 9 16 16 C 1.38232 * 119.99473 * 39.72651 * 15 11 10 17 17 C 1.38244 * 119.99529 * 179.81239 * 16 15 11 18 18 C 1.38237 * 119.99875 * 0.39475 * 17 16 15 19 19 C 1.38233 * 120.00046 * 359.85960 * 18 17 16 20 20 C 1.38233 * 119.99964 * 219.99872 * 15 11 10 21 21 C 1.46903 * 110.99839 * 70.25327 * 10 9 7 22 22 C 1.52996 * 117.49571 * 117.56458 * 21 10 9 23 23 C 1.52996 * 117.50163 * 48.90017 * 21 10 9 24 24 H 0.97007 * 119.99588 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46997 * 60.84331 * 9 7 2 26 26 H 1.09001 * 109.47013 * 300.84183 * 9 7 2 27 27 H 1.08998 * 109.47060 * 302.57644 * 13 11 10 28 28 H 1.08995 * 109.46769 * 182.57123 * 13 11 10 29 29 H 1.00902 * 111.00104 * 56.04156 * 14 13 11 30 30 H 1.00897 * 111.00131 * 180.02562 * 14 13 11 31 31 H 1.07995 * 120.00629 * 0.02562 * 16 15 11 32 32 H 1.07997 * 120.00130 * 180.23247 * 17 16 15 33 33 H 1.07999 * 119.99829 * 179.83974 * 18 17 16 34 34 H 1.07996 * 120.00279 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.00050 * 359.97438 * 20 15 11 36 36 H 1.09000 * 115.54558 * 263.22506 * 21 10 9 37 37 H 1.09000 * 117.50315 * 359.97438 * 22 21 10 38 38 H 1.09000 * 117.49951 * 145.02016 * 22 21 10 39 39 H 1.08998 * 117.50276 * 214.97679 * 23 21 10 40 40 H 1.09006 * 117.49794 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5791 -0.0188 11 6 3.4106 -3.3620 1.0750 12 1 2.3266 -3.2495 1.0583 13 6 3.9550 -2.8593 2.4136 14 7 3.5544 -1.4597 2.6106 15 6 3.7676 -4.8158 0.9017 16 6 5.0336 -5.1705 0.4747 17 6 5.3622 -6.5043 0.3195 18 6 4.4223 -7.4830 0.5834 19 6 3.1546 -7.1280 1.0053 20 6 2.8272 -5.7944 1.1643 21 6 3.7401 -3.2110 -1.3191 22 6 4.9494 -3.6621 -2.1406 23 6 4.1430 -2.4356 -2.5750 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6934 0.8986 26 1 3.8752 -0.6676 -0.8812 27 1 5.0427 -2.9292 2.4128 28 1 3.5522 -3.4696 3.2218 29 1 2.5523 -1.3586 2.5508 30 1 3.9024 -1.1041 3.4883 31 1 5.7670 -4.4058 0.2657 32 1 6.3524 -6.7816 -0.0104 33 1 4.6782 -8.5249 0.4597 34 1 2.4202 -7.8925 1.2111 35 1 1.8369 -5.5171 1.4940 36 1 2.8392 -3.8223 -1.3723 37 1 5.9386 -3.4896 -1.7166 38 1 4.8440 -4.5698 -2.7347 39 1 3.5074 -2.5370 -3.4546 40 1 4.6021 -1.4567 -2.4364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042899489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:06 Heat of formation + Delta-G solvation = 56.837986 kcal Electronic energy + Delta-G solvation = -20359.160158 eV Core-core repulsion = 17560.407350 eV Total energy + Delta-G solvation = -2798.752807 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79659 -38.83094 -36.64104 -34.67957 -33.32843 -32.33757 -31.65846 -29.01035 -27.13319 -24.42326 -23.64315 -22.95583 -22.83112 -21.78410 -20.42395 -18.77697 -17.92286 -17.11082 -16.63314 -16.24599 -16.19259 -15.48949 -15.36527 -15.20575 -14.94031 -14.38538 -14.07379 -13.83790 -13.69693 -13.26833 -13.22483 -13.00119 -12.71115 -12.48591 -12.24567 -12.01586 -11.86187 -11.71229 -11.65626 -11.48391 -11.07212 -10.68934 -10.65635 -9.67652 -9.47589 -9.13791 -8.70078 -8.16042 -6.12479 0.56322 0.64906 1.40951 1.43893 1.58684 2.46452 2.96817 3.13459 3.23519 3.29514 3.72785 4.13343 4.19050 4.20827 4.27865 4.28345 4.40901 4.42795 4.47657 4.65714 4.73533 4.77594 4.84885 4.88336 4.94298 5.15090 5.20661 5.22897 5.26975 5.34534 5.43909 5.62950 5.70879 5.74525 5.83434 5.93543 6.24249 6.31722 6.39970 6.55020 6.70307 6.80253 6.93184 7.50730 9.00312 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024140 B = 0.007095 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.625166 B = 3945.435391 C = 4319.685708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.237 1.237 7 C -0.505 4.505 8 H 0.024 0.976 9 C 0.140 3.860 10 N -0.478 5.478 11 C 0.128 3.872 12 H 0.025 0.975 13 C 0.092 3.908 14 N -0.839 5.839 15 C -0.083 4.083 16 C -0.090 4.090 17 C -0.125 4.125 18 C -0.125 4.125 19 C -0.128 4.128 20 C -0.138 4.138 21 C 0.019 3.981 22 C -0.137 4.137 23 C -0.188 4.188 24 H 0.258 0.742 25 H 0.100 0.900 26 H 0.003 0.997 27 H 0.079 0.921 28 H 0.028 0.972 29 H 0.344 0.656 30 H 0.339 0.661 31 H 0.127 0.873 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.178 -11.844 2.541 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.182 4.182 3 Si 0.764 3.236 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.160 1.160 7 C -0.544 4.544 8 H 0.042 0.958 9 C 0.013 3.987 10 N -0.200 5.200 11 C 0.019 3.981 12 H 0.043 0.957 13 C -0.039 4.039 14 N -0.370 5.370 15 C -0.084 4.084 16 C -0.108 4.108 17 C -0.143 4.143 18 C -0.143 4.143 19 C -0.146 4.146 20 C -0.157 4.157 21 C -0.091 4.091 22 C -0.175 4.175 23 C -0.225 4.225 24 H 0.067 0.933 25 H 0.117 0.883 26 H 0.021 0.979 27 H 0.097 0.903 28 H 0.046 0.954 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.153 0.847 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.997 -11.564 1.995 17.511 hybrid contribution -2.280 0.749 0.463 2.444 sum 10.717 -10.815 2.458 15.423 Atomic orbital electron populations 1.70101 1.08216 1.27299 1.54445 1.25647 0.95059 1.02528 0.94956 0.85833 0.80293 0.79307 0.78141 1.21050 1.22102 1.16020 1.21764 0.92819 0.91922 1.47872 0.95779 1.20807 0.91656 0.87280 0.98947 1.62357 1.55542 1.02428 0.99661 1.20474 0.96235 0.89029 0.92345 0.95697 1.21584 1.00335 0.88396 0.93596 1.58853 1.19290 1.19183 1.39712 1.19855 0.95048 0.93821 0.99706 1.21107 0.95571 0.96730 0.97409 1.21444 1.00507 0.92286 1.00047 1.21424 0.93122 1.00501 0.99282 1.21277 0.97828 0.95203 1.00310 1.21143 0.98752 0.93990 1.01816 1.22042 0.96431 1.01742 0.88837 1.23093 0.96055 0.96958 1.01418 1.23009 1.04541 0.97075 0.97911 0.93296 0.88274 0.97889 0.90308 0.95396 0.84258 0.84703 0.85533 0.83791 0.83658 0.84659 0.87873 0.93407 0.87739 0.88241 0.89615 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.58 13.96 21.45 0.30 -59.28 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.94 44.77 27.45 68.60 1.88 46.66 16 4 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.24 -10.49 6.57 99.48 0.65 -9.84 16 7 C -0.50 -27.73 7.26 25.60 0.19 -27.54 16 8 H 0.02 1.51 6.46 -2.91 -0.02 1.49 16 9 C 0.14 6.52 3.46 85.56 0.30 6.82 16 10 N -0.48 -19.16 4.16 -854.77 -3.55 -22.71 16 11 C 0.13 4.90 1.79 44.17 0.08 4.98 16 12 H 0.03 1.18 5.67 -2.39 -0.01 1.17 16 13 C 0.09 3.07 6.38 86.30 0.55 3.62 16 14 N -0.84 -29.57 6.10 -186.71 -1.14 -30.70 16 15 C -0.08 -2.73 3.81 -19.87 -0.08 -2.80 16 16 C -0.09 -2.51 7.44 22.27 0.17 -2.35 16 17 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 18 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 19 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 20 C -0.14 -4.29 9.67 22.27 0.22 -4.08 16 21 C 0.02 0.74 3.38 44.91 0.15 0.89 16 22 C -0.14 -4.15 8.78 30.62 0.27 -3.88 16 23 C -0.19 -6.80 9.64 30.62 0.30 -6.51 16 24 H 0.26 15.29 8.31 -92.70 -0.77 14.51 16 25 H 0.10 4.59 4.43 -2.39 -0.01 4.58 16 26 H 0.00 0.15 5.55 -2.39 -0.01 0.14 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.34 13.91 7.93 -89.69 -0.71 13.20 16 30 H 0.34 9.70 9.08 -89.70 -0.81 8.89 16 31 H 0.13 3.58 6.71 -2.91 -0.02 3.56 16 32 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.10 3.35 8.04 -2.91 -0.02 3.33 16 36 H 0.05 2.14 7.79 -2.39 -0.02 2.12 16 37 H 0.10 2.90 7.62 -2.39 -0.02 2.88 16 38 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.09 3.28 6.80 -2.38 -0.02 3.26 16 Total: -1.00 -64.60 310.78 0.23 -64.37 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -0.53 Total: 39.24 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 3.27 Total: -37.57 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.39 Total: -112.69 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -64.60 0.23 -64.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042899489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.210 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds