Wall clock time and date at job start Mon Mar 30 2020 06:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 H 1.08997 * 109.47302 * 305.63885 * 3 2 1 5 5 C 1.50704 * 109.47152 * 65.63312 * 3 2 1 6 6 H 1.08002 * 120.00094 * 25.85791 * 5 3 2 7 7 C 1.37873 * 120.00081 * 205.85420 * 5 3 2 8 8 N 1.31522 * 120.00138 * 185.19827 * 7 5 3 9 9 Si 1.86794 * 120.00087 * 5.20137 * 7 5 3 10 10 H 1.48498 * 109.47423 * 84.63724 * 9 7 5 11 11 H 1.48501 * 109.47456 * 204.63796 * 9 7 5 12 12 H 1.48498 * 109.47349 * 324.63939 * 9 7 5 13 13 C 1.50700 * 109.47197 * 185.63460 * 3 2 1 14 14 O 1.21251 * 120.00045 * 270.00029 * 13 3 2 15 15 C 1.47164 * 119.99612 * 90.27528 * 13 3 2 16 16 C 1.39850 * 120.17530 * 359.44881 * 15 13 3 17 17 C 1.37890 * 119.82522 * 179.74352 * 16 15 13 18 18 C 1.38404 * 120.16754 * 0.53288 * 17 16 15 19 19 C 1.50701 * 119.82117 * 179.69852 * 18 17 16 20 20 C 1.52999 * 109.47194 * 300.02322 * 19 18 17 21 21 C 1.53003 * 109.47195 * 60.02230 * 19 18 17 22 22 C 1.38402 * 120.35522 * 359.72302 * 18 17 16 23 23 C 1.37888 * 120.17020 * 0.02562 * 22 18 17 24 24 H 1.09001 * 109.47528 * 304.76327 * 1 2 3 25 25 H 1.09001 * 109.46974 * 64.76792 * 1 2 3 26 26 H 1.09007 * 109.46985 * 184.76581 * 1 2 3 27 27 H 1.08993 * 109.47301 * 239.99363 * 2 1 3 28 28 H 1.09004 * 109.46853 * 120.00028 * 2 1 3 29 29 H 0.96993 * 119.99947 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.08554 * 0.02562 * 16 15 13 31 31 H 1.08000 * 119.91497 * 180.23771 * 17 16 15 32 32 H 1.09004 * 109.47316 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.47144 * 60.00146 * 20 19 18 34 34 H 1.09003 * 109.47051 * 179.97438 * 20 19 18 35 35 H 1.08995 * 109.47305 * 300.00021 * 20 19 18 36 36 H 1.08997 * 109.47269 * 299.99931 * 21 19 18 37 37 H 1.09003 * 109.47119 * 60.00211 * 21 19 18 38 38 H 1.08998 * 109.47244 * 179.97438 * 21 19 18 39 39 H 1.07991 * 119.91728 * 180.02562 * 22 18 17 40 40 H 1.08001 * 120.08990 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 1.6547 2.1115 1.2943 6 1 1.4934 1.5178 2.1819 7 6 1.5083 3.4815 1.3453 8 7 1.2730 4.0754 2.4949 9 14 1.6442 4.4941 -0.2185 10 1 0.3306 4.5146 -0.9107 11 1 2.0448 5.8825 0.1240 12 1 2.6651 3.8905 -1.1121 13 6 3.5405 1.4448 -0.1395 14 8 4.2414 1.4114 0.8494 15 6 4.1551 1.4938 -1.4758 16 6 3.3502 1.5266 -2.6189 17 6 3.9337 1.5778 -3.8673 18 6 5.3122 1.5855 -3.9909 19 6 5.9416 1.6347 -5.3593 20 6 5.5020 0.4120 -6.1671 21 6 5.4966 2.9090 -6.0799 22 6 6.1156 1.5478 -2.8646 23 6 5.5473 1.5017 -1.6092 24 1 -0.3634 0.5860 0.8442 25 1 -0.3633 0.4381 -0.9296 26 1 -0.3633 -1.0242 0.0854 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.1703 5.0392 2.5308 30 1 2.2744 1.5165 -2.5241 31 1 3.3134 1.6071 -4.7509 32 1 7.0271 1.6335 -5.2602 33 1 4.4165 0.4132 -6.2663 34 1 5.9569 0.4478 -7.1571 35 1 5.8189 -0.4958 -5.6539 36 1 4.4111 2.9101 -6.1790 37 1 5.8098 3.7801 -5.5044 38 1 5.9522 2.9448 -7.0694 39 1 7.1905 1.5546 -2.9693 40 1 6.1756 1.4719 -0.7312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043368455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:43 Heat of formation + Delta-G solvation = -40.573220 kcal Electronic energy + Delta-G solvation = -19507.740780 eV Core-core repulsion = 16672.471155 eV Total energy + Delta-G solvation = -2835.269625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.72483 -38.07236 -35.13623 -34.44626 -31.98661 -30.86876 -29.89763 -27.89379 -27.30055 -24.66151 -23.29142 -22.43789 -21.06467 -19.93626 -18.70809 -17.16106 -16.39654 -15.59792 -15.03425 -14.52545 -14.23914 -14.07164 -13.80517 -13.59265 -13.46684 -13.20283 -13.11073 -12.69648 -12.56494 -12.43940 -11.91097 -11.77818 -11.30884 -11.24315 -11.20020 -11.06168 -10.87760 -10.83813 -10.58393 -10.49115 -9.84257 -9.61737 -9.29226 -8.75043 -8.71229 -8.42921 -8.35515 -6.11001 -4.09564 1.12707 1.61613 3.18153 3.23336 3.32223 3.34982 4.20122 4.36984 4.55976 4.68687 4.82541 5.04837 5.13819 5.17056 5.31748 5.35622 5.45156 5.55288 5.62400 5.66136 5.78547 5.81172 5.87912 5.93087 6.07263 6.07481 6.09243 6.16311 6.21215 6.38087 6.52467 6.56566 6.66553 6.70761 6.77189 6.95499 7.08348 7.14133 7.18714 7.64405 8.40851 8.70331 8.96339 9.49512 11.01991 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.006134 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.013984 B = 4563.413806 C = 4830.027029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 C -0.023 4.023 4 H 0.051 0.949 5 C -0.493 4.493 6 H 0.080 0.920 7 C 0.075 3.925 8 N -0.891 5.891 9 Si 0.858 3.142 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.259 1.259 13 C 0.383 3.617 14 O -0.446 6.446 15 C -0.155 4.155 16 C -0.072 4.072 17 C -0.131 4.131 18 C -0.065 4.065 19 C -0.058 4.058 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.134 4.134 23 C -0.072 4.072 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.265 0.735 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.121 0.879 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.256 -5.476 -17.647 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.134 4.134 3 C -0.042 4.042 4 H 0.069 0.931 5 C -0.530 4.530 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.528 5.528 9 Si 0.684 3.316 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.184 1.184 13 C 0.259 3.741 14 O -0.319 6.319 15 C -0.156 4.156 16 C -0.090 4.090 17 C -0.149 4.149 18 C -0.065 4.065 19 C -0.076 4.076 20 C -0.201 4.201 21 C -0.202 4.202 22 C -0.152 4.152 23 C -0.090 4.090 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.588 -5.304 -17.010 18.997 hybrid contribution 0.118 0.877 -0.817 1.204 sum 6.706 -4.428 -17.827 19.554 Atomic orbital electron populations 1.21671 0.95693 0.99899 1.02432 1.21263 0.96231 0.95908 0.99994 1.19665 0.89107 0.95611 0.99848 0.93122 1.20679 1.45966 0.91984 0.94399 0.90216 1.25033 0.94367 0.97682 0.95671 1.69884 1.48472 1.10037 1.24363 0.87132 0.79337 0.80344 0.84770 1.19655 1.21245 1.18353 1.23840 0.94081 0.70483 0.85719 1.90370 1.65663 1.35264 1.40639 1.21271 0.94170 1.03243 0.96954 1.21559 1.00339 0.95545 0.91598 1.20893 0.94221 1.02588 0.97240 1.19990 0.93703 0.98184 0.94627 1.20150 0.99854 0.95883 0.91708 1.21853 1.01709 0.97259 0.99247 1.21864 1.01711 0.96894 0.99726 1.20958 0.99385 1.02886 0.91946 1.21470 0.94499 0.95487 0.97566 0.90796 0.93864 0.94367 0.94216 0.92330 0.92542 0.85041 0.86015 0.90553 0.92322 0.92529 0.92483 0.92314 0.92484 0.92497 0.86130 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.81 37.16 0.36 -2.13 16 2 C -0.10 -1.89 5.37 -26.73 -0.14 -2.04 16 3 C -0.02 -0.53 1.11 -92.92 -0.10 -0.63 16 4 H 0.05 1.12 4.19 -51.93 -0.22 0.91 16 5 C -0.49 -13.77 7.24 -34.44 -0.25 -14.02 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 7 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 8 N -0.89 -27.41 13.96 55.43 0.77 -26.64 16 9 Si 0.86 21.21 26.70 -169.99 -4.54 16.67 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.26 -6.12 6.28 56.52 0.36 -5.76 16 13 C 0.38 8.90 5.38 -30.69 -0.17 8.74 16 14 O -0.45 -11.73 16.35 5.58 0.09 -11.64 16 15 C -0.16 -3.03 5.64 -105.06 -0.59 -3.62 16 16 C -0.07 -1.22 9.30 -39.11 -0.36 -1.58 16 17 C -0.13 -1.83 8.68 -39.65 -0.34 -2.18 16 18 C -0.06 -0.85 4.79 -104.50 -0.50 -1.35 16 19 C -0.06 -0.57 3.09 -91.77 -0.28 -0.85 16 20 C -0.14 -1.24 9.00 37.16 0.33 -0.90 16 21 C -0.14 -1.33 9.00 37.16 0.33 -0.99 16 22 C -0.13 -1.90 9.65 -39.65 -0.38 -2.28 16 23 C -0.07 -1.25 9.60 -39.10 -0.38 -1.63 16 24 H 0.07 1.49 7.26 -51.93 -0.38 1.12 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.13 2.11 6.37 -52.49 -0.33 1.78 16 31 H 0.12 1.39 7.07 -52.49 -0.37 1.02 16 32 H 0.08 0.69 7.86 -51.93 -0.41 0.28 16 33 H 0.06 0.50 7.37 -51.93 -0.38 0.12 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.54 7.37 -51.93 -0.38 0.16 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.12 1.39 7.93 -52.49 -0.42 0.97 16 40 H 0.13 2.25 7.65 -52.49 -0.40 1.84 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -31.80 325.23 -7.62 -39.42 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.28 Total: 0.67 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -2.57 Total: -23.40 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.77 Total: -26.64 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.54 Total: 16.67 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.80 -7.62 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.149 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds