Wall clock time and date at job start Mon Mar 30 2020 06:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46925 * 2 1 4 4 H 1.09001 * 109.47086 * 305.00308 * 3 2 1 5 5 C 1.50698 * 109.47325 * 184.99910 * 3 2 1 6 6 H 1.08003 * 119.99865 * 240.00452 * 5 3 2 7 7 C 1.37871 * 119.99849 * 59.99846 * 5 3 2 8 8 N 1.31514 * 120.00355 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00129 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46952 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47365 * 119.99928 * 9 7 5 12 12 H 1.48501 * 109.47267 * 240.00142 * 9 7 5 13 13 C 1.50699 * 109.47225 * 64.99580 * 3 2 1 14 14 O 1.21261 * 120.00010 * 94.99925 * 13 3 2 15 15 C 1.47163 * 120.00311 * 275.00310 * 13 3 2 16 16 C 1.39853 * 120.17249 * 179.97438 * 15 13 3 17 17 C 1.37893 * 119.82687 * 180.02562 * 16 15 13 18 18 C 1.38401 * 120.16996 * 0.02661 * 17 16 15 19 19 C 1.50699 * 119.82564 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.47083 * 239.99731 * 19 18 17 21 21 C 1.52997 * 109.47078 * 119.99857 * 19 18 17 22 22 C 1.38408 * 120.34971 * 0.22948 * 18 17 16 23 23 C 1.37886 * 120.17218 * 359.49172 * 22 18 17 24 24 H 1.08993 * 109.47544 * 299.99610 * 1 2 3 25 25 H 1.09001 * 109.47151 * 60.00117 * 1 2 3 26 26 H 1.09005 * 109.46681 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47341 * 239.99875 * 2 1 3 28 28 H 1.09001 * 109.47151 * 119.99883 * 2 1 3 29 29 H 0.96999 * 120.00562 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.09274 * 0.04819 * 16 15 13 31 31 H 1.07994 * 119.91313 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46959 * 359.97438 * 19 18 17 33 33 H 1.08992 * 109.47399 * 299.99938 * 20 19 18 34 34 H 1.09004 * 109.46724 * 60.00424 * 20 19 18 35 35 H 1.09001 * 109.47194 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.47153 * 60.00207 * 21 19 18 37 37 H 1.08998 * 109.47533 * 179.97438 * 21 19 18 38 38 H 1.08996 * 109.47853 * 300.00179 * 21 19 18 39 39 H 1.08003 * 119.91352 * 179.71948 * 22 18 17 40 40 H 1.07999 * 120.08925 * 180.23068 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8786 -1.2279 8 7 3.4062 0.3376 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5987 1.5455 -0.1936 11 1 6.4962 -0.5188 -1.4626 12 1 6.3999 1.6159 -2.6091 13 6 1.6412 2.1163 1.2876 14 8 2.4156 2.1485 2.2202 15 6 0.3120 2.7353 1.4134 16 6 -0.0620 3.3610 2.6069 17 6 -1.3094 3.9382 2.7170 18 6 -2.1907 3.8989 1.6506 19 6 -3.5523 4.5317 1.7797 20 6 -4.6312 3.4676 1.5692 21 6 -3.7064 5.6297 0.7254 22 6 -1.8300 3.2769 0.4679 23 6 -0.5841 2.7002 0.3401 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0609 -2.9499 30 1 0.6245 3.3925 3.4400 31 1 -1.5995 4.4222 3.6379 32 1 -3.6587 4.9649 2.7742 33 1 -4.5249 3.0340 0.5749 34 1 -4.5214 2.6854 2.3204 35 1 -5.6161 3.9252 1.6630 36 1 -3.6001 5.1961 -0.2690 37 1 -4.6913 6.0872 0.8184 38 1 -2.9377 6.3879 0.8752 39 1 -2.5249 3.2464 -0.3583 40 1 -0.3027 2.2184 -0.5846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043368456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:46 Heat of formation + Delta-G solvation = -36.320979 kcal Electronic energy + Delta-G solvation = -19472.610352 eV Core-core repulsion = 16637.525117 eV Total energy + Delta-G solvation = -2835.085234 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77821 -38.05332 -35.16239 -34.43359 -31.89087 -30.52911 -29.68251 -27.77926 -27.26107 -24.61021 -23.11683 -22.47687 -21.16260 -20.00428 -18.54313 -16.81054 -16.00763 -15.57757 -15.00359 -14.66122 -14.24723 -14.04626 -13.95822 -13.53942 -13.30779 -13.17206 -12.66183 -12.59756 -12.42084 -12.21581 -11.87996 -11.65690 -11.31887 -11.22264 -11.19185 -10.90082 -10.76687 -10.65122 -10.57456 -10.16100 -9.93317 -9.73989 -8.94129 -8.65812 -8.50738 -8.36960 -8.22001 -6.04054 -4.08702 1.15670 1.67985 3.20549 3.30963 3.38693 3.46368 4.23878 4.42875 4.60431 4.73605 5.01129 5.08782 5.21207 5.23162 5.27832 5.35632 5.49159 5.60383 5.66202 5.70433 5.83114 5.85236 6.07812 6.11266 6.12211 6.14246 6.22419 6.27109 6.32841 6.48574 6.70304 6.76495 6.81485 6.89036 6.95918 7.15743 7.19916 7.56159 7.78357 8.00580 8.26263 8.68556 8.96972 9.55977 11.02316 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.032790 B = 0.004831 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.712260 B = 5795.080128 C = 6022.583750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C 0.011 3.989 4 H 0.052 0.948 5 C -0.506 4.506 6 H 0.067 0.933 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.397 3.603 14 O -0.465 6.465 15 C -0.158 4.158 16 C -0.071 4.071 17 C -0.139 4.139 18 C -0.061 4.061 19 C -0.058 4.058 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.135 4.135 23 C -0.065 4.065 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.105 0.895 28 H 0.037 0.963 29 H 0.261 0.739 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.122 0.878 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.166 6.196 4.468 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.008 4.008 4 H 0.070 0.930 5 C -0.544 4.544 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.276 3.724 14 O -0.340 6.340 15 C -0.159 4.159 16 C -0.089 4.089 17 C -0.157 4.157 18 C -0.061 4.061 19 C -0.076 4.076 20 C -0.201 4.201 21 C -0.201 4.201 22 C -0.153 4.153 23 C -0.083 4.083 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.123 0.877 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.732 6.124 4.789 16.658 hybrid contribution 0.900 -0.049 -0.184 0.920 sum -13.832 6.076 4.605 15.793 Atomic orbital electron populations 1.22273 0.99099 0.99951 1.00319 1.21488 0.91664 0.98132 1.03427 1.19167 0.97796 0.93382 0.90422 0.93025 1.21156 0.90124 1.37615 1.05475 0.91433 1.24926 0.98445 0.95080 0.95508 1.69858 1.34868 1.38876 1.09558 0.86455 0.85410 0.77739 0.78015 1.19621 1.20952 1.21003 1.23386 0.83473 0.74904 0.90682 1.90350 1.52325 1.50062 1.41300 1.21104 0.97939 1.02040 0.94857 1.21430 0.95719 0.94495 0.97245 1.20919 0.94115 1.02125 0.98499 1.19995 0.95212 0.97045 0.93898 1.20150 0.91718 0.95694 1.00063 1.21858 0.97499 0.98447 1.02321 1.21857 1.01408 0.98056 0.98821 1.20910 0.96890 1.00051 0.97483 1.21909 0.92506 0.94874 0.98990 0.93743 0.93019 0.94385 0.87683 0.94420 0.92945 0.85463 0.86293 0.90650 0.92239 0.92519 0.92576 0.92244 0.92575 0.92487 0.86035 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.23 37.16 0.31 -2.68 16 2 C -0.11 -2.53 5.23 -26.73 -0.14 -2.67 16 3 C 0.01 0.28 1.76 -92.92 -0.16 0.11 16 4 H 0.05 1.30 6.74 -51.93 -0.35 0.95 16 5 C -0.51 -14.24 8.33 -34.44 -0.29 -14.53 16 6 H 0.07 1.99 7.03 -52.48 -0.37 1.63 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.75 11.29 55.43 0.63 -24.12 16 9 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.40 9.19 5.88 -30.69 -0.18 9.01 16 14 O -0.46 -11.89 15.81 5.57 0.09 -11.81 16 15 C -0.16 -3.00 4.92 -105.06 -0.52 -3.52 16 16 C -0.07 -1.19 9.60 -39.10 -0.38 -1.56 16 17 C -0.14 -1.91 9.65 -39.65 -0.38 -2.29 16 18 C -0.06 -0.78 4.79 -104.50 -0.50 -1.29 16 19 C -0.06 -0.57 3.09 -91.77 -0.28 -0.85 16 20 C -0.14 -1.27 9.00 37.16 0.33 -0.94 16 21 C -0.14 -1.29 9.01 37.16 0.33 -0.95 16 22 C -0.14 -1.86 8.68 -39.65 -0.34 -2.21 16 23 C -0.06 -1.08 7.06 -39.11 -0.28 -1.36 16 24 H 0.04 0.80 5.31 -51.93 -0.28 0.53 16 25 H 0.05 0.91 6.47 -51.93 -0.34 0.57 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.11 2.69 5.95 -51.93 -0.31 2.38 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.13 2.13 7.65 -52.49 -0.40 1.73 16 31 H 0.12 1.33 7.93 -52.49 -0.42 0.92 16 32 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 33 H 0.06 0.53 7.36 -51.93 -0.38 0.15 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.53 7.39 -51.93 -0.38 0.15 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.12 1.40 7.07 -52.48 -0.37 1.03 16 40 H 0.14 2.44 4.25 -52.49 -0.22 2.22 16 LS Contribution 316.67 15.07 4.77 4.77 Total: -1.00 -29.65 316.67 -8.00 -37.65 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.90 Total: 1.05 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -2.57 Total: -24.12 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.63 Total: -24.12 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.65 -8.00 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.328 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds