Wall clock time and date at job start Mon Mar 30 2020 06:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46925 * 2 1 4 4 H 1.09001 * 109.47086 * 305.00308 * 3 2 1 5 5 C 1.50698 * 109.47325 * 184.99910 * 3 2 1 6 6 H 1.08003 * 119.99865 * 240.00452 * 5 3 2 7 7 C 1.37871 * 119.99849 * 59.99846 * 5 3 2 8 8 N 1.31514 * 120.00355 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00129 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46952 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47365 * 119.99928 * 9 7 5 12 12 H 1.48501 * 109.47267 * 240.00142 * 9 7 5 13 13 C 1.50699 * 109.47225 * 64.99580 * 3 2 1 14 14 O 1.21261 * 120.00010 * 94.99925 * 13 3 2 15 15 C 1.47163 * 120.00311 * 275.00310 * 13 3 2 16 16 C 1.39853 * 120.17249 * 179.97438 * 15 13 3 17 17 C 1.37893 * 119.82687 * 180.02562 * 16 15 13 18 18 C 1.38401 * 120.16996 * 0.02661 * 17 16 15 19 19 C 1.50699 * 119.82564 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.47083 * 239.99731 * 19 18 17 21 21 C 1.52997 * 109.47078 * 119.99857 * 19 18 17 22 22 C 1.38408 * 120.34971 * 0.22948 * 18 17 16 23 23 C 1.37886 * 120.17218 * 359.49172 * 22 18 17 24 24 H 1.08993 * 109.47544 * 299.99610 * 1 2 3 25 25 H 1.09001 * 109.47151 * 60.00117 * 1 2 3 26 26 H 1.09005 * 109.46681 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47341 * 239.99875 * 2 1 3 28 28 H 1.09001 * 109.47151 * 119.99883 * 2 1 3 29 29 H 0.96999 * 120.00562 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.09274 * 0.04819 * 16 15 13 31 31 H 1.07994 * 119.91313 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46959 * 359.97438 * 19 18 17 33 33 H 1.08992 * 109.47399 * 299.99938 * 20 19 18 34 34 H 1.09004 * 109.46724 * 60.00424 * 20 19 18 35 35 H 1.09001 * 109.47194 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.47153 * 60.00207 * 21 19 18 37 37 H 1.08998 * 109.47533 * 179.97438 * 21 19 18 38 38 H 1.08996 * 109.47853 * 300.00179 * 21 19 18 39 39 H 1.08003 * 119.91352 * 179.71948 * 22 18 17 40 40 H 1.07999 * 120.08925 * 180.23068 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8786 -1.2279 8 7 3.4062 0.3376 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5987 1.5455 -0.1936 11 1 6.4962 -0.5188 -1.4626 12 1 6.3999 1.6159 -2.6091 13 6 1.6412 2.1163 1.2876 14 8 2.4156 2.1485 2.2202 15 6 0.3120 2.7353 1.4134 16 6 -0.0620 3.3610 2.6069 17 6 -1.3094 3.9382 2.7170 18 6 -2.1907 3.8989 1.6506 19 6 -3.5523 4.5317 1.7797 20 6 -4.6312 3.4676 1.5692 21 6 -3.7064 5.6297 0.7254 22 6 -1.8300 3.2769 0.4679 23 6 -0.5841 2.7002 0.3401 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0609 -2.9499 30 1 0.6245 3.3925 3.4400 31 1 -1.5995 4.4222 3.6379 32 1 -3.6587 4.9649 2.7742 33 1 -4.5249 3.0340 0.5749 34 1 -4.5214 2.6854 2.3204 35 1 -5.6161 3.9252 1.6630 36 1 -3.6001 5.1961 -0.2690 37 1 -4.6913 6.0872 0.8184 38 1 -2.9377 6.3879 0.8752 39 1 -2.5249 3.2464 -0.3583 40 1 -0.3027 2.2184 -0.5846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043368456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:45 Heat of formation + Delta-G solvation = -50.999735 kcal Electronic energy + Delta-G solvation = -19473.246870 eV Core-core repulsion = 16637.525117 eV Total energy + Delta-G solvation = -2835.721753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.19601 -39.54552 -36.50292 -36.03399 -33.80088 -31.81143 -30.91446 -29.65400 -27.90683 -26.27482 -24.69917 -23.74463 -22.66512 -21.11335 -20.15179 -18.62222 -17.72738 -17.06082 -16.35518 -16.20752 -15.89471 -15.41263 -15.23069 -14.73051 -14.55600 -14.34386 -14.14788 -14.02635 -13.77554 -13.31094 -13.26432 -13.18313 -12.83839 -12.81257 -12.59018 -12.27489 -12.12707 -12.00059 -11.79827 -11.68051 -11.61150 -11.38678 -10.97257 -10.54476 -10.13579 -9.85339 -9.58986 -8.16333 -6.28640 -0.19814 0.48549 1.36759 1.38828 1.51402 1.65149 2.40210 2.90471 3.11022 3.40246 3.73539 3.86360 4.06174 4.20604 4.37593 4.40272 4.47460 4.53188 4.56155 4.57525 4.66041 4.81614 4.89226 4.96141 5.01540 5.03645 5.06850 5.12145 5.21541 5.25323 5.32614 5.37065 5.46402 5.47679 5.54121 5.59366 5.70108 5.73073 5.96753 6.01964 6.24358 6.75178 6.89751 7.38471 8.88372 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.032790 B = 0.004831 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.712260 B = 5795.080128 C = 6022.583750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C 0.007 3.993 4 H 0.045 0.955 5 C -0.537 4.537 6 H 0.041 0.959 7 C 0.024 3.976 8 N -0.906 5.906 9 Si 0.953 3.047 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.271 1.271 13 C 0.397 3.603 14 O -0.507 6.507 15 C -0.189 4.189 16 C -0.079 4.079 17 C -0.134 4.134 18 C -0.045 4.045 19 C -0.056 4.056 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.130 4.130 23 C -0.068 4.068 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.018 0.982 29 H 0.266 0.734 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.150 0.850 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.962 7.162 4.310 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C -0.012 4.012 4 H 0.063 0.937 5 C -0.575 4.575 6 H 0.060 0.940 7 C -0.176 4.176 8 N -0.545 5.545 9 Si 0.778 3.222 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.196 1.196 13 C 0.279 3.721 14 O -0.386 6.386 15 C -0.190 4.190 16 C -0.097 4.097 17 C -0.151 4.151 18 C -0.045 4.045 19 C -0.075 4.075 20 C -0.201 4.201 21 C -0.202 4.202 22 C -0.148 4.148 23 C -0.086 4.086 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.136 0.864 31 H 0.168 0.832 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.168 0.832 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.549 7.086 4.611 19.480 hybrid contribution 1.670 -0.290 -0.135 1.700 sum -15.880 6.796 4.476 17.843 Atomic orbital electron populations 1.22132 0.95327 1.01541 1.01306 1.21314 0.95008 0.96562 1.01174 1.19133 0.96075 0.94532 0.91419 0.93745 1.21329 0.92116 1.38635 1.05458 0.94041 1.25566 1.02420 0.94530 0.95080 1.69934 1.36248 1.38604 1.09670 0.85589 0.80611 0.78100 0.77879 1.20526 1.19939 1.19641 1.23477 0.85157 0.74196 0.89279 1.90314 1.54063 1.52053 1.42140 1.20707 0.96329 1.04883 0.97113 1.21472 0.97092 0.94921 0.96205 1.21239 0.92667 1.01092 1.00121 1.20460 0.96382 0.94888 0.92763 1.20254 0.89738 0.96094 1.01370 1.21866 0.98039 0.98044 1.02149 1.21869 1.02401 0.97556 0.98339 1.21191 0.95896 0.98861 0.98810 1.21852 0.93388 0.95487 0.97883 0.93057 0.91708 0.92433 0.90054 0.96328 0.92483 0.86365 0.83177 0.89145 0.92266 0.93017 0.90655 0.92326 0.90606 0.93154 0.83239 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 8.23 71.98 0.59 -4.83 16 2 C -0.10 -4.93 5.23 30.60 0.16 -4.77 16 3 C 0.01 0.38 1.76 -12.29 -0.02 0.35 16 4 H 0.04 2.34 6.74 -2.39 -0.02 2.33 16 5 C -0.54 -31.79 8.33 25.60 0.21 -31.58 16 6 H 0.04 2.61 7.03 -2.91 -0.02 2.58 16 7 C 0.02 1.34 5.29 84.65 0.45 1.79 16 8 N -0.91 -51.10 11.29 21.44 0.24 -50.85 16 9 Si 0.95 45.24 29.54 68.60 2.03 47.27 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 C 0.40 19.32 5.88 28.03 0.16 19.48 16 14 O -0.51 -27.61 15.81 -2.97 -0.05 -27.66 16 15 C -0.19 -7.29 4.92 -20.15 -0.10 -7.39 16 16 C -0.08 -2.62 9.60 22.58 0.22 -2.40 16 17 C -0.13 -3.33 9.65 22.23 0.21 -3.11 16 18 C -0.04 -0.99 4.79 -19.79 -0.09 -1.09 16 19 C -0.06 -0.85 3.09 -11.54 -0.04 -0.89 16 20 C -0.14 -1.91 9.00 71.98 0.65 -1.26 16 21 C -0.14 -1.98 9.01 71.98 0.65 -1.33 16 22 C -0.13 -3.21 8.68 22.23 0.19 -3.02 16 23 C -0.07 -2.21 7.06 22.58 0.16 -2.05 16 24 H 0.05 1.84 5.31 -2.39 -0.01 1.82 16 25 H 0.06 2.22 6.47 -2.39 -0.02 2.21 16 26 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.08 4.30 5.95 -2.39 -0.01 4.28 16 28 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.12 4.07 7.65 -2.91 -0.02 4.04 16 31 H 0.15 2.79 7.93 -2.91 -0.02 2.77 16 32 H 0.09 1.17 7.86 -2.39 -0.02 1.15 16 33 H 0.06 0.80 7.36 -2.39 -0.02 0.78 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.82 7.39 -2.39 -0.02 0.80 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.15 2.87 7.07 -2.91 -0.02 2.85 16 40 H 0.14 4.56 4.25 -2.91 -0.01 4.54 16 Total: -1.00 -67.04 316.67 6.65 -60.39 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.02 Total: 12.94 kcal Atomic # 6 Polarization: -45.50 SS G_CDS: 3.41 Total: -42.09 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.24 Total: -50.85 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.05 Total: -27.66 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.04 6.65 -60.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.390 kcal (2) G-P(sol) polarization free energy of solvation -67.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds