Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52990 * 109.47158 * 2 1 4 4 H 1.09000 * 109.47550 * 271.64959 * 3 2 1 5 5 C 1.50699 * 109.47324 * 151.64849 * 3 2 1 6 6 H 1.08001 * 120.00252 * 240.00601 * 5 3 2 7 7 C 1.37879 * 119.99661 * 59.99838 * 5 3 2 8 8 N 1.31512 * 120.00168 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99780 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47272 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47075 * 120.00452 * 9 7 5 12 12 H 1.48504 * 109.47270 * 240.00094 * 9 7 5 13 13 C 1.50703 * 109.47383 * 31.65086 * 3 2 1 14 14 O 1.21253 * 119.99934 * 97.20534 * 13 3 2 15 15 C 1.47170 * 120.00210 * 277.21007 * 13 3 2 16 16 C 1.39856 * 120.16910 * 352.60154 * 15 13 3 17 17 C 1.50707 * 120.08715 * 359.97438 * 16 15 13 18 18 C 1.37879 * 119.82743 * 180.02562 * 16 15 13 19 19 C 1.38407 * 120.16859 * 0.02562 * 18 16 15 20 20 C 1.50704 * 119.82594 * 179.97438 * 19 18 16 21 21 C 1.38409 * 120.35024 * 0.23643 * 19 18 16 22 22 C 1.37885 * 120.16993 * 359.48326 * 21 19 18 23 23 C 1.50700 * 120.08444 * 180.27960 * 22 21 19 24 24 H 1.08995 * 109.46540 * 297.27515 * 1 2 3 25 25 H 1.08997 * 109.47166 * 57.27048 * 1 2 3 26 26 H 1.08998 * 109.46923 * 177.27560 * 1 2 3 27 27 H 1.09007 * 109.46526 * 240.00273 * 2 1 3 28 28 H 1.08999 * 109.47012 * 120.00497 * 2 1 3 29 29 H 0.96998 * 119.99686 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47090 * 282.99005 * 17 16 15 31 31 H 1.09001 * 109.46942 * 42.98914 * 17 16 15 32 32 H 1.09000 * 109.47247 * 162.98545 * 17 16 15 33 33 H 1.08001 * 119.91999 * 179.97438 * 18 16 15 34 34 H 1.09000 * 109.46947 * 89.99982 * 20 19 18 35 35 H 1.08997 * 109.47131 * 210.00428 * 20 19 18 36 36 H 1.09004 * 109.47092 * 330.00370 * 20 19 18 37 37 H 1.07996 * 119.91132 * 179.72517 * 21 19 18 38 38 H 1.09007 * 109.47007 * 263.51050 * 23 22 21 39 39 H 1.08989 * 109.47588 * 23.51548 * 23 22 21 40 40 H 1.08996 * 109.46911 * 143.52101 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 2.1333 1.7949 -1.0272 5 6 3.3864 1.4993 0.6747 6 1 3.5238 2.1092 1.5553 7 6 4.4427 0.7724 0.1678 8 7 4.2755 0.0300 -0.9048 9 14 6.1114 0.8423 1.0045 10 1 6.0372 1.7437 2.1823 11 1 6.5006 -0.5207 1.4473 12 1 7.1232 1.3599 0.0486 13 6 1.0672 2.3192 0.7456 14 8 1.2679 2.5944 1.9093 15 6 -0.1264 2.8415 0.0613 16 6 -0.2840 2.6572 -1.3161 17 6 0.7690 1.9229 -2.1055 18 6 -1.4049 3.1499 -1.9502 19 6 -2.3723 3.8259 -1.2272 20 6 -3.5941 4.3617 -1.9281 21 6 -2.2211 4.0172 0.1353 22 6 -1.1086 3.5254 0.7848 23 6 -0.9489 3.7292 2.2693 24 1 -0.3632 0.4709 0.9134 25 1 -0.3633 0.5556 -0.8645 26 1 -0.3633 -1.0265 -0.0488 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.0188 -0.4810 -1.2616 30 1 1.6219 2.5806 -2.2731 31 1 1.0925 1.0431 -1.5492 32 1 0.3544 1.6139 -3.0650 33 1 -1.5279 3.0087 -3.0138 34 1 -4.3777 3.6041 -1.9225 35 1 -3.9475 5.2540 -1.4113 36 1 -3.3407 4.6146 -2.9577 37 1 -2.9782 4.5495 0.6917 38 1 -0.3194 4.6005 2.4508 39 1 -1.9277 3.8877 2.7217 40 1 -0.4838 2.8471 2.7092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043368488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = -2.033991 kcal Electronic energy + Delta-G solvation = -20344.601867 eV Core-core repulsion = 17511.003428 eV Total energy + Delta-G solvation = -2833.598439 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.80329 -39.23480 -37.31697 -34.65487 -34.19030 -33.05379 -29.67089 -28.94128 -28.43857 -27.62161 -25.49009 -23.53267 -21.85172 -21.51581 -20.24854 -18.49514 -17.30087 -16.88999 -16.52371 -16.19011 -15.97129 -15.38298 -14.95882 -14.74538 -14.56841 -14.40440 -13.99979 -13.78171 -13.56341 -13.36177 -13.20681 -12.98744 -12.94458 -12.73692 -12.58932 -12.47479 -12.21078 -12.08426 -12.01819 -11.80969 -11.71200 -11.49018 -10.60882 -10.23754 -9.86445 -9.49813 -9.41436 -8.14249 -6.19623 -0.12036 0.46603 1.36500 1.39234 1.51221 1.73509 2.42546 2.84194 3.16621 3.49231 3.83864 3.89264 3.95878 4.36581 4.37458 4.43065 4.46333 4.56665 4.59816 4.68080 4.73059 4.76220 4.84653 4.86983 4.92770 5.00692 5.06522 5.09830 5.16273 5.22248 5.31052 5.35139 5.44880 5.58005 5.63504 5.68357 5.72297 5.84045 5.89084 6.10102 6.29764 6.82132 7.03150 7.44615 8.93655 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.029046 B = 0.006397 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.750688 B = 4376.225767 C = 4815.166671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.079 4.079 3 C -0.041 4.041 4 H 0.101 0.899 5 C -0.534 4.534 6 H 0.037 0.963 7 C 0.025 3.975 8 N -0.906 5.906 9 Si 0.946 3.054 10 H -0.283 1.283 11 H -0.277 1.277 12 H -0.273 1.273 13 C 0.398 3.602 14 O -0.499 6.499 15 C -0.196 4.196 16 C -0.026 4.026 17 C -0.169 4.169 18 C -0.147 4.147 19 C -0.051 4.051 20 C -0.112 4.112 21 C -0.148 4.148 22 C -0.044 4.044 23 C -0.114 4.114 24 H 0.029 0.971 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.023 0.977 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.149 0.851 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.560 5.720 -4.967 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.117 4.117 3 C -0.059 4.059 4 H 0.118 0.882 5 C -0.572 4.572 6 H 0.056 0.944 7 C -0.174 4.174 8 N -0.545 5.545 9 Si 0.772 3.228 10 H -0.208 1.208 11 H -0.202 1.202 12 H -0.198 1.198 13 C 0.281 3.719 14 O -0.379 6.379 15 C -0.197 4.197 16 C -0.026 4.026 17 C -0.224 4.224 18 C -0.165 4.165 19 C -0.051 4.051 20 C -0.168 4.168 21 C -0.166 4.166 22 C -0.044 4.044 23 C -0.170 4.170 24 H 0.048 0.952 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.169 0.831 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.167 0.833 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.356 5.739 -4.489 16.997 hybrid contribution 1.563 -0.187 0.795 1.764 sum -13.793 5.552 -3.694 15.320 Atomic orbital electron populations 1.22452 0.96267 1.01918 1.01470 1.21109 0.93369 0.96435 1.00804 1.20454 0.92204 0.93053 1.00211 0.88171 1.21378 0.95584 1.28033 1.12179 0.94437 1.25473 1.01445 0.94896 0.95616 1.69984 1.32513 1.29600 1.22422 0.85689 0.80652 0.77799 0.78611 1.20789 1.20241 1.19796 1.23293 0.84487 0.76926 0.87217 1.90284 1.74110 1.53648 1.19843 1.20512 0.98046 1.05816 0.95310 1.20199 0.95852 0.94573 0.91961 1.22230 0.96651 1.02525 1.00986 1.21179 0.93476 1.00735 1.01100 1.20504 0.96527 0.94564 0.93479 1.20903 0.93618 1.01625 1.00678 1.21112 0.97853 1.02831 0.94756 1.20376 0.93562 0.93886 0.96597 1.20947 1.02291 1.02551 0.91254 0.95161 0.89974 0.92032 0.91065 0.95832 0.92674 0.91512 0.86574 0.89613 0.83085 0.89526 0.90161 0.90082 0.83290 0.91803 0.89661 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.31 8.21 71.99 0.59 -5.72 16 2 C -0.08 -3.73 4.18 30.59 0.13 -3.60 16 3 C -0.04 -2.09 1.68 -12.29 -0.02 -2.11 16 4 H 0.10 4.97 3.46 -11.39 -0.04 4.93 16 5 C -0.53 -31.18 8.17 25.60 0.21 -30.97 16 6 H 0.04 2.35 6.98 -2.91 -0.02 2.33 16 7 C 0.03 1.42 5.30 84.66 0.45 1.87 16 8 N -0.91 -50.43 11.86 21.45 0.25 -50.18 16 9 Si 0.95 45.28 29.54 68.60 2.03 47.31 16 10 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 13 C 0.40 19.05 4.76 28.03 0.13 19.19 16 14 O -0.50 -26.36 12.79 -2.94 -0.04 -26.40 16 15 C -0.20 -7.60 4.42 -20.15 -0.09 -7.69 16 16 C -0.03 -0.85 4.36 -19.56 -0.09 -0.93 16 17 C -0.17 -5.77 7.11 71.24 0.51 -5.26 16 18 C -0.15 -3.77 9.30 22.22 0.21 -3.56 16 19 C -0.05 -1.15 5.89 -19.78 -0.12 -1.26 16 20 C -0.11 -1.54 10.01 71.24 0.71 -0.82 16 21 C -0.15 -3.79 9.31 22.23 0.21 -3.58 16 22 C -0.04 -1.48 5.92 -19.56 -0.12 -1.60 16 23 C -0.11 -3.77 8.71 71.24 0.62 -3.15 16 24 H 0.03 1.21 6.60 -2.39 -0.02 1.19 16 25 H 0.08 2.87 3.91 -2.39 -0.01 2.86 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 3.44 6.92 -2.38 -0.02 3.42 16 28 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 29 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 30 H 0.07 2.47 7.17 -2.39 -0.02 2.45 16 31 H 0.12 4.57 1.89 -2.39 0.00 4.57 16 32 H 0.09 2.30 7.97 -2.39 -0.02 2.29 16 33 H 0.15 2.94 8.01 -2.91 -0.02 2.91 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 36 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 37 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.08 2.14 8.04 -2.39 -0.02 2.12 16 40 H 0.06 2.42 5.92 -2.39 -0.01 2.41 16 Total: -1.00 -66.49 304.52 6.59 -59.89 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.01 Total: 18.58 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 3.34 Total: -49.21 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.25 Total: -50.18 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.04 Total: -26.40 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -66.49 6.59 -59.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.861 kcal (2) G-P(sol) polarization free energy of solvation -66.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds