Wall clock time and date at job start Mon Mar 30 2020 06:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48503 * 109.47021 * 269.99708 * 3 2 1 5 5 H 1.48499 * 109.47382 * 29.99598 * 3 2 1 6 6 H 1.48499 * 109.47184 * 149.99824 * 3 2 1 7 7 C 1.37881 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47015 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47207 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47037 * 174.86594 * 11 10 9 13 13 C 1.46425 * 111.00298 * 67.38819 * 12 11 10 14 14 C 1.53374 * 108.64942 * 181.18373 * 13 12 11 15 15 C 1.53039 * 107.93030 * 68.33518 * 14 13 12 16 16 C 1.50814 * 109.67653 * 312.61274 * 15 14 13 17 17 C 1.38612 * 118.05415 * 195.51520 * 16 15 14 18 18 C 1.38619 * 120.43860 * 180.27351 * 17 16 15 19 19 N 1.40002 * 120.13571 * 180.02562 * 18 17 16 20 20 C 1.38886 * 119.72697 * 0.02562 * 18 17 16 21 21 C 1.37778 * 119.87646 * 359.86458 * 20 18 17 22 22 C 1.38349 * 122.02242 * 15.56381 * 16 15 14 23 23 H 0.97000 * 119.99777 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47379 * 59.99675 * 9 7 2 25 25 H 1.08999 * 109.47352 * 299.99633 * 9 7 2 26 26 H 1.09007 * 109.46955 * 299.99370 * 10 9 7 27 27 H 1.08999 * 109.47423 * 59.99567 * 10 9 7 28 28 H 1.09007 * 109.46669 * 294.86285 * 11 10 9 29 29 H 1.08993 * 109.47522 * 54.85883 * 11 10 9 30 30 H 1.08997 * 109.60635 * 300.93820 * 13 12 11 31 31 H 1.09005 * 109.60712 * 61.26614 * 13 12 11 32 32 H 1.09000 * 109.77115 * 187.94078 * 14 13 12 33 33 H 1.08996 * 109.77214 * 308.67677 * 14 13 12 34 34 H 1.08999 * 109.43559 * 72.67228 * 15 14 13 35 35 H 1.08992 * 109.43852 * 192.54903 * 15 14 13 36 36 H 1.08000 * 119.78246 * 0.24797 * 17 16 15 37 37 H 0.96994 * 120.00242 * 359.97438 * 19 18 17 38 38 H 0.96998 * 119.99586 * 179.97438 * 19 18 17 39 39 H 1.08006 * 120.06456 * 179.87657 * 20 18 17 40 40 H 1.07992 * 119.74097 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 7 2.4302 -6.1009 -0.1215 13 6 3.2648 -6.2131 1.0763 14 6 4.2530 -7.3694 0.8789 15 6 5.2449 -6.9603 -0.2124 16 6 4.4964 -6.3927 -1.3921 17 6 5.1727 -6.2705 -2.5959 18 6 4.5341 -5.7498 -3.7105 19 7 5.2231 -5.6298 -4.9233 20 6 3.2079 -5.3475 -3.6192 21 6 2.5341 -5.4707 -2.4238 22 6 3.1737 -5.9974 -1.3005 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8726 -3.6048 -0.8878 27 1 2.8713 -3.6039 0.8922 28 1 0.9234 -5.0855 0.9331 29 1 0.7873 -5.0062 -0.8399 30 1 3.8143 -5.2841 1.2276 31 1 2.6351 -6.4109 1.9437 32 1 4.7871 -7.5609 1.8096 33 1 3.7148 -8.2660 0.5716 34 1 5.9268 -6.2066 0.1813 35 1 5.8147 -7.8333 -0.5303 36 1 6.2042 -6.5828 -2.6657 37 1 6.1494 -5.9109 -4.9848 38 1 4.7742 -5.2654 -5.7021 39 1 2.7056 -4.9392 -4.4838 40 1 1.5028 -5.1576 -2.3554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:07 Heat of formation + Delta-G solvation = 13.977032 kcal Electronic energy + Delta-G solvation = -19576.341435 eV Core-core repulsion = 16775.730037 eV Total energy + Delta-G solvation = -2800.611398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37305 -37.38091 -34.93205 -33.41752 -33.12664 -30.94470 -29.75050 -27.96256 -26.67993 -24.45568 -23.16209 -22.64823 -21.27928 -20.26647 -19.04351 -16.87522 -16.82838 -16.22396 -15.93413 -14.95332 -14.67185 -14.48446 -14.36601 -13.50725 -13.45085 -13.24615 -12.93982 -12.71771 -12.51138 -12.14047 -12.04551 -11.61979 -11.28695 -11.20967 -10.87217 -10.75264 -10.72501 -10.53639 -10.32093 -10.17233 -9.57274 -9.40142 -9.15204 -8.48906 -8.41111 -8.31538 -6.65479 -5.97417 -3.99441 1.69860 1.95093 3.32862 3.38871 3.42685 3.96179 4.06956 4.37367 4.48028 4.84664 4.98037 5.12896 5.21411 5.38029 5.44905 5.50466 5.60504 5.71621 5.75664 5.82262 5.94912 5.98460 6.01779 6.10121 6.22763 6.29805 6.38819 6.42620 6.46735 6.66411 6.76364 6.88145 7.01828 7.13346 7.51704 7.58654 7.69516 7.81695 7.86722 7.91854 8.02293 8.46370 9.07223 9.64341 11.13578 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.005634 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.680261 B = 4968.662830 C = 5730.075891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.027 3.973 10 C -0.142 4.142 11 C 0.051 3.949 12 N -0.494 5.494 13 C 0.054 3.946 14 C -0.120 4.120 15 C -0.076 4.076 16 C -0.085 4.085 17 C -0.176 4.176 18 C 0.180 3.820 19 N -0.887 5.887 20 C -0.168 4.168 21 C -0.101 4.101 22 C 0.089 3.911 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.392 0.608 38 H 0.394 0.606 39 H 0.117 0.883 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.388 -15.020 -4.232 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.180 4.180 11 C -0.074 4.074 12 N -0.208 5.208 13 C -0.073 4.073 14 C -0.158 4.158 15 C -0.113 4.113 16 C -0.088 4.088 17 C -0.200 4.200 18 C 0.078 3.922 19 N -0.428 5.428 20 C -0.190 4.190 21 C -0.122 4.122 22 C -0.010 4.010 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.219 0.781 38 H 0.221 0.779 39 H 0.135 0.865 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.888 -15.338 -4.107 18.197 hybrid contribution 0.999 1.761 -0.372 2.058 sum 9.887 -13.577 -4.479 17.383 Atomic orbital electron populations 1.69960 1.05996 1.26507 1.51077 1.25007 0.94825 0.99143 0.95416 0.86633 0.79883 0.83636 0.78101 1.20687 1.21199 1.19947 1.21242 0.92941 0.91132 1.50255 0.92932 1.19004 0.93795 0.91218 0.97091 1.22235 0.99914 0.95089 1.00800 1.22508 0.94428 0.87924 1.02561 1.58689 1.18414 1.42604 1.01058 1.22118 0.94925 0.98214 0.92053 1.21685 0.96841 0.98717 0.98508 1.20484 0.97287 1.00101 0.93434 1.19179 0.92175 1.02454 0.95013 1.20211 0.99554 1.08185 0.92019 1.17563 0.91670 0.96494 0.86514 1.42356 1.15144 1.75208 1.10108 1.20388 0.93444 1.06643 0.98548 1.20987 1.00338 0.99237 0.91606 1.18358 0.91103 1.00282 0.91302 0.93054 0.96598 0.96687 0.92538 0.93494 0.90694 0.90330 0.93173 0.90287 0.91079 0.90932 0.91046 0.91093 0.86920 0.78081 0.77862 0.86454 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.56 16 10 C -0.14 -3.01 4.49 -26.73 -0.12 -3.13 16 11 C 0.05 0.91 4.84 -3.82 -0.02 0.89 16 12 N -0.49 -8.00 4.73 -171.19 -0.81 -8.81 16 13 C 0.05 0.76 5.25 -3.89 -0.02 0.74 16 14 C -0.12 -1.40 6.19 -26.52 -0.16 -1.57 16 15 C -0.08 -0.92 5.80 -27.81 -0.16 -1.08 16 16 C -0.08 -1.26 5.74 -104.39 -0.60 -1.86 16 17 C -0.18 -2.45 9.48 -39.30 -0.37 -2.82 16 18 C 0.18 2.50 6.76 -83.75 -0.57 1.94 16 19 N -0.89 -9.17 9.11 32.42 0.30 -8.87 16 20 C -0.17 -2.54 9.89 -39.51 -0.39 -2.93 16 21 C -0.10 -1.68 7.82 -39.25 -0.31 -1.99 16 22 C 0.09 1.47 4.80 -83.70 -0.40 1.07 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 1.26 6.18 -51.93 -0.32 0.94 16 27 H 0.05 1.00 6.82 -51.93 -0.35 0.65 16 28 H 0.07 1.28 8.11 -51.92 -0.42 0.86 16 29 H 0.08 1.39 6.12 -51.93 -0.32 1.07 16 30 H 0.05 0.78 6.55 -51.93 -0.34 0.44 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.39 3.25 8.85 -40.82 -0.36 2.89 16 38 H 0.39 3.46 8.85 -40.82 -0.36 3.10 16 39 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.13 2.15 5.90 -52.49 -0.31 1.84 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -31.72 315.11 -9.85 -41.57 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.13 Total: 4.71 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -3.67 Total: -23.93 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.22 Total: -44.15 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.72 -9.85 -41.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.549 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds