Wall clock time and date at job start Mon Mar 30 2020 06:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48503 * 109.47021 * 269.99708 * 3 2 1 5 5 H 1.48499 * 109.47382 * 29.99598 * 3 2 1 6 6 H 1.48499 * 109.47184 * 149.99824 * 3 2 1 7 7 C 1.37881 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47015 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47207 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47037 * 174.86594 * 11 10 9 13 13 C 1.46425 * 111.00298 * 67.38819 * 12 11 10 14 14 C 1.53374 * 108.64942 * 181.18373 * 13 12 11 15 15 C 1.53039 * 107.93030 * 68.33518 * 14 13 12 16 16 C 1.50814 * 109.67653 * 312.61274 * 15 14 13 17 17 C 1.38612 * 118.05415 * 195.51520 * 16 15 14 18 18 C 1.38619 * 120.43860 * 180.27351 * 17 16 15 19 19 N 1.40002 * 120.13571 * 180.02562 * 18 17 16 20 20 C 1.38886 * 119.72697 * 0.02562 * 18 17 16 21 21 C 1.37778 * 119.87646 * 359.86458 * 20 18 17 22 22 C 1.38349 * 122.02242 * 15.56381 * 16 15 14 23 23 H 0.97000 * 119.99777 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47379 * 59.99675 * 9 7 2 25 25 H 1.08999 * 109.47352 * 299.99633 * 9 7 2 26 26 H 1.09007 * 109.46955 * 299.99370 * 10 9 7 27 27 H 1.08999 * 109.47423 * 59.99567 * 10 9 7 28 28 H 1.09007 * 109.46669 * 294.86285 * 11 10 9 29 29 H 1.08993 * 109.47522 * 54.85883 * 11 10 9 30 30 H 1.08997 * 109.60635 * 300.93820 * 13 12 11 31 31 H 1.09005 * 109.60712 * 61.26614 * 13 12 11 32 32 H 1.09000 * 109.77115 * 187.94078 * 14 13 12 33 33 H 1.08996 * 109.77214 * 308.67677 * 14 13 12 34 34 H 1.08999 * 109.43559 * 72.67228 * 15 14 13 35 35 H 1.08992 * 109.43852 * 192.54903 * 15 14 13 36 36 H 1.08000 * 119.78246 * 0.24797 * 17 16 15 37 37 H 0.96994 * 120.00242 * 359.97438 * 19 18 17 38 38 H 0.96998 * 119.99586 * 179.97438 * 19 18 17 39 39 H 1.08006 * 120.06456 * 179.87657 * 20 18 17 40 40 H 1.07992 * 119.74097 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 7 2.4302 -6.1009 -0.1215 13 6 3.2648 -6.2131 1.0763 14 6 4.2530 -7.3694 0.8789 15 6 5.2449 -6.9603 -0.2124 16 6 4.4964 -6.3927 -1.3921 17 6 5.1727 -6.2705 -2.5959 18 6 4.5341 -5.7498 -3.7105 19 7 5.2231 -5.6298 -4.9233 20 6 3.2079 -5.3475 -3.6192 21 6 2.5341 -5.4707 -2.4238 22 6 3.1737 -5.9974 -1.3005 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8726 -3.6048 -0.8878 27 1 2.8713 -3.6039 0.8922 28 1 0.9234 -5.0855 0.9331 29 1 0.7873 -5.0062 -0.8399 30 1 3.8143 -5.2841 1.2276 31 1 2.6351 -6.4109 1.9437 32 1 4.7871 -7.5609 1.8096 33 1 3.7148 -8.2660 0.5716 34 1 5.9268 -6.2066 0.1813 35 1 5.8147 -7.8333 -0.5303 36 1 6.2042 -6.5828 -2.6657 37 1 6.1494 -5.9109 -4.9848 38 1 4.7742 -5.2654 -5.7021 39 1 2.7056 -4.9392 -4.4838 40 1 1.5028 -5.1576 -2.3554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:06 Heat of formation + Delta-G solvation = -5.863912 kcal Electronic energy + Delta-G solvation = -19577.201803 eV Core-core repulsion = 16775.730037 eV Total energy + Delta-G solvation = -2801.471766 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.54170 -38.53717 -36.36321 -35.04571 -34.39776 -32.76346 -30.89476 -29.08024 -28.39728 -25.96245 -24.52952 -23.82232 -22.81149 -21.81485 -20.15638 -18.56877 -17.95726 -17.76572 -17.06574 -16.60202 -16.03344 -15.88731 -15.66735 -14.89930 -14.66597 -14.54857 -14.30764 -14.02508 -13.81762 -13.68977 -13.38699 -13.08554 -12.84846 -12.64819 -12.53976 -12.52523 -12.23414 -11.80937 -11.62493 -11.49192 -11.34734 -11.17206 -11.10869 -10.56817 -9.73152 -9.52725 -8.22587 -7.77481 -6.33015 0.55030 0.78666 1.36427 1.37786 1.48957 2.38422 2.80100 3.10551 3.14060 3.20063 3.80459 3.97502 3.98727 4.15141 4.23815 4.34642 4.41760 4.52657 4.54412 4.59878 4.70634 4.80545 4.89045 4.94905 5.04352 5.06266 5.12516 5.18537 5.27406 5.31812 5.37307 5.42977 5.49484 5.60417 5.70623 5.82555 5.90005 6.21442 6.28682 6.49903 6.76374 6.82356 7.14157 7.35788 8.89561 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.005634 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.680261 B = 4968.662830 C = 5730.075891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.119 4.119 11 C 0.062 3.938 12 N -0.492 5.492 13 C 0.047 3.953 14 C -0.112 4.112 15 C -0.076 4.076 16 C -0.089 4.089 17 C -0.183 4.183 18 C 0.183 3.817 19 N -0.874 5.874 20 C -0.187 4.187 21 C -0.122 4.122 22 C 0.060 3.940 23 H 0.264 0.736 24 H -0.008 1.008 25 H -0.005 1.005 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.140 0.860 37 H 0.405 0.595 38 H 0.402 0.598 39 H 0.126 0.874 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.773 -15.583 -4.341 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.069 0.931 9 C -0.005 4.005 10 C -0.158 4.158 11 C -0.064 4.064 12 N -0.206 5.206 13 C -0.080 4.080 14 C -0.149 4.149 15 C -0.113 4.113 16 C -0.093 4.093 17 C -0.206 4.206 18 C 0.078 3.922 19 N -0.415 5.415 20 C -0.210 4.210 21 C -0.143 4.143 22 C -0.039 4.039 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.013 0.987 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.158 0.842 37 H 0.234 0.766 38 H 0.231 0.769 39 H 0.144 0.856 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.305 -15.919 -4.247 19.982 hybrid contribution 0.277 1.921 -0.413 1.984 sum 11.582 -13.998 -4.660 18.757 Atomic orbital electron populations 1.70083 1.07637 1.27777 1.51541 1.25929 0.95775 1.03133 0.94671 0.85508 0.78701 0.78697 0.78538 1.19786 1.20287 1.19018 1.21627 0.93131 0.92632 1.50718 0.93084 1.18880 0.94123 0.92668 0.94867 1.21938 0.98658 0.95185 0.99997 1.22285 0.94542 0.86952 1.02643 1.58769 1.18851 1.41059 1.01897 1.22278 0.95419 0.98672 0.91613 1.21675 0.96203 0.97272 0.99772 1.20581 0.97248 1.01037 0.92460 1.19601 0.91644 1.01491 0.96542 1.20554 1.00742 1.07778 0.91560 1.17698 0.91298 0.95396 0.87777 1.42323 1.15677 1.74325 1.09217 1.20553 0.94448 1.07501 0.98453 1.21036 1.00054 1.00392 0.92779 1.18543 0.92220 1.02017 0.91136 0.92682 0.98952 0.98688 0.93681 0.93684 0.90061 0.90873 0.94863 0.89269 0.88299 0.90968 0.90554 0.88648 0.84241 0.76560 0.76870 0.85632 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.96 45.35 29.54 68.60 2.03 47.37 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -32.16 9.11 25.60 0.23 -31.93 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.77 4.97 29.85 0.15 1.91 16 10 C -0.12 -5.24 4.49 30.60 0.14 -5.10 16 11 C 0.06 2.28 4.84 86.30 0.42 2.69 16 12 N -0.49 -15.99 4.73 -695.53 -3.29 -19.28 16 13 C 0.05 1.28 5.25 86.52 0.45 1.73 16 14 C -0.11 -2.34 6.19 30.73 0.19 -2.15 16 15 C -0.08 -1.65 5.80 29.90 0.17 -1.47 16 16 C -0.09 -2.53 5.74 -19.71 -0.11 -2.65 16 17 C -0.18 -4.69 9.48 22.45 0.21 -4.48 16 18 C 0.18 4.81 6.76 38.08 0.26 5.07 16 19 N -0.87 -16.06 9.11 -51.36 -0.47 -16.53 16 20 C -0.19 -5.68 9.89 22.32 0.22 -5.46 16 21 C -0.12 -4.19 7.82 22.49 0.18 -4.01 16 22 C 0.06 1.98 4.80 38.23 0.18 2.16 16 23 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 24 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.04 2.07 6.18 -2.38 -0.01 2.06 16 27 H 0.04 1.97 6.82 -2.39 -0.02 1.95 16 28 H 0.08 2.84 8.11 -2.38 -0.02 2.82 16 29 H 0.07 2.74 6.12 -2.39 -0.01 2.73 16 30 H 0.03 1.02 6.55 -2.39 -0.02 1.00 16 31 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.40 5.52 8.85 -92.71 -0.82 4.70 16 38 H 0.40 6.25 8.85 -92.71 -0.82 5.43 16 39 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.11 4.08 5.90 -2.91 -0.02 4.06 16 Total: -1.00 -68.89 315.11 1.11 -67.78 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.59 Total: 20.93 kcal Atomic # 6 Polarization: -46.21 SS G_CDS: 3.15 Total: -43.06 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -3.47 Total: -93.03 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -68.89 1.11 -67.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.916 kcal (2) G-P(sol) polarization free energy of solvation -68.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds