Wall clock time and date at job start Mon Mar 30 2020 06:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99608 * 2 1 4 4 H 1.48504 * 109.47119 * 269.99515 * 3 2 1 5 5 H 1.48493 * 109.47482 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47100 * 149.99737 * 3 2 1 7 7 C 1.37870 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99752 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00229 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47264 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47025 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47226 * 174.86886 * 11 10 9 13 13 C 1.46418 * 110.99964 * 67.43746 * 12 11 10 14 14 C 1.53384 * 108.64592 * 181.11625 * 13 12 11 15 15 C 1.53036 * 107.91959 * 68.31785 * 14 13 12 16 16 C 1.50832 * 109.65928 * 312.67419 * 15 14 13 17 17 C 1.38692 * 118.04875 * 195.44798 * 16 15 14 18 18 C 1.37905 * 120.59618 * 180.23176 * 17 16 15 19 19 C 1.38995 * 119.80669 * 0.04730 * 18 17 16 20 20 N 1.39674 * 120.09921 * 179.84916 * 19 18 17 21 21 C 1.38469 * 119.79706 * 359.87107 * 19 18 17 22 22 C 1.38460 * 121.98195 * 15.50407 * 16 15 14 23 23 H 0.96999 * 120.00654 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46775 * 60.00196 * 9 7 2 25 25 H 1.08996 * 109.47142 * 300.00031 * 9 7 2 26 26 H 1.08994 * 109.47070 * 59.99358 * 10 9 7 27 27 H 1.09006 * 109.46801 * 299.99798 * 10 9 7 28 28 H 1.08997 * 109.47304 * 294.86788 * 11 10 9 29 29 H 1.08995 * 109.47608 * 54.86764 * 11 10 9 30 30 H 1.09004 * 109.61297 * 300.86166 * 13 12 11 31 31 H 1.09005 * 109.60800 * 61.20025 * 13 12 11 32 32 H 1.09005 * 109.76885 * 187.92076 * 14 13 12 33 33 H 1.08999 * 109.77495 * 308.65427 * 14 13 12 34 34 H 1.08993 * 109.44001 * 72.73442 * 15 14 13 35 35 H 1.09000 * 109.44104 * 192.62050 * 15 14 13 36 36 H 1.08001 * 119.69874 * 0.25553 * 17 16 15 37 37 H 1.07995 * 120.09364 * 180.02562 * 18 17 16 38 38 H 0.97008 * 119.99786 * 180.02562 * 20 19 18 39 39 H 0.96996 * 120.00581 * 0.02562 * 20 19 18 40 40 H 1.07996 * 119.81444 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5516 -2.6363 0.0022 12 7 6.0413 -4.0157 0.1260 13 6 5.7228 -4.7950 -1.0719 14 6 6.2316 -6.2284 -0.8741 15 6 5.3817 -6.8834 0.2170 16 6 5.2620 -5.9500 1.3958 17 6 4.8165 -6.4742 2.6001 18 6 4.6829 -5.6671 3.7103 19 6 4.9961 -4.3157 3.6237 20 7 4.8601 -3.4920 4.7435 21 6 5.4429 -3.7883 2.4239 22 6 5.5806 -4.6058 1.3021 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6799 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 3.6586 -3.1501 -0.8891 27 1 3.6580 -3.1504 0.8908 28 1 5.9157 -2.2038 -0.9297 29 1 5.9143 -2.0452 0.8431 30 1 4.6434 -4.8078 -1.2238 31 1 6.2089 -4.3480 -1.9391 32 1 6.1312 -6.7870 -1.8048 33 1 7.2771 -6.2095 -0.5666 34 1 4.3887 -7.0992 -0.1772 35 1 5.8543 -7.8123 0.5364 36 1 4.5723 -7.5240 2.6691 37 1 4.3357 -6.0839 4.6441 38 1 5.0787 -2.5489 4.6814 39 1 4.5470 -3.8629 5.5833 40 1 5.6867 -2.7384 2.3564 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051296882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:30 Heat of formation + Delta-G solvation = 16.309300 kcal Electronic energy + Delta-G solvation = -19725.784328 eV Core-core repulsion = 16925.274065 eV Total energy + Delta-G solvation = -2800.510263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45724 -37.35174 -35.23882 -33.45147 -32.95535 -31.26296 -29.56084 -28.30861 -26.99157 -24.48207 -23.17507 -22.58673 -21.16128 -20.25991 -19.12674 -17.05727 -16.86933 -16.50096 -15.79506 -14.94940 -14.83487 -14.55427 -14.02478 -13.80779 -13.56685 -13.28535 -13.00464 -12.71773 -12.60310 -12.58666 -12.10041 -11.52609 -11.42692 -11.30195 -11.13447 -10.80044 -10.65981 -10.42723 -10.19397 -9.94249 -9.80077 -9.66782 -9.24318 -9.08303 -8.53284 -7.56013 -7.05029 -6.03381 -4.01149 1.77439 1.91800 3.29690 3.37072 3.40304 3.85458 4.12086 4.32077 4.45003 4.87016 5.00854 5.10926 5.21172 5.30226 5.41863 5.49573 5.61452 5.64718 5.69702 5.77259 5.89271 5.94446 5.95904 6.05971 6.10581 6.19193 6.24921 6.44427 6.49623 6.59870 6.68128 6.82010 6.88991 6.91603 7.29799 7.37742 7.41500 7.59396 7.77797 7.79968 7.96350 8.55864 9.02027 9.58974 11.10285 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.006054 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.500286 B = 4623.894812 C = 5336.685223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.070 0.930 9 C -0.008 4.008 10 C -0.135 4.135 11 C 0.051 3.949 12 N -0.496 5.496 13 C 0.054 3.946 14 C -0.120 4.120 15 C -0.067 4.067 16 C -0.187 4.187 17 C -0.049 4.049 18 C -0.228 4.228 19 C 0.237 3.763 20 N -0.879 5.879 21 C -0.232 4.232 22 C 0.188 3.812 23 H 0.262 0.738 24 H 0.014 0.986 25 H 0.010 0.990 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.397 0.603 39 H 0.395 0.605 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.379 -11.476 4.201 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.088 0.912 9 C -0.046 4.046 10 C -0.173 4.173 11 C -0.074 4.074 12 N -0.208 5.208 13 C -0.073 4.073 14 C -0.158 4.158 15 C -0.104 4.104 16 C -0.192 4.192 17 C -0.069 4.069 18 C -0.252 4.252 19 C 0.132 3.868 20 N -0.417 5.417 21 C -0.258 4.258 22 C 0.087 3.913 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.225 0.775 39 H 0.222 0.778 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.759 -11.327 4.090 18.285 hybrid contribution -0.530 1.225 0.313 1.371 sum 13.229 -10.102 4.403 17.217 Atomic orbital electron populations 1.69919 1.06303 1.26801 1.51351 1.25037 0.94721 0.99124 0.94659 0.86777 0.80330 0.83667 0.78488 1.20312 1.21431 1.19050 1.21137 0.89540 0.94376 1.50494 0.91223 1.19472 0.97183 0.91886 0.96019 1.22084 0.92834 1.00615 1.01795 1.22523 0.95888 0.86458 1.02569 1.58343 1.56557 1.04303 1.01587 1.22157 1.00223 0.93403 0.91492 1.21691 1.00297 0.95015 0.98801 1.20352 0.99873 0.96911 0.93298 1.19198 1.10421 0.93314 0.96274 1.20563 0.96144 0.98638 0.91533 1.20324 1.12850 0.92431 0.99575 1.17468 0.92184 0.90077 0.87049 1.42431 1.77112 1.11252 1.10913 1.20471 1.13289 1.00045 0.91968 1.18201 0.91031 0.91853 0.90195 0.92797 0.96738 0.97187 0.92823 0.91737 0.90582 0.90296 0.92753 0.90191 0.91047 0.91036 0.91542 0.91472 0.86670 0.86895 0.77487 0.77773 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.18 4.04 -27.88 -0.11 -0.30 16 10 C -0.13 -2.74 4.49 -26.73 -0.12 -2.86 16 11 C 0.05 0.84 4.84 -3.83 -0.02 0.83 16 12 N -0.50 -7.72 4.72 -171.30 -0.81 -8.53 16 13 C 0.05 0.73 5.25 -3.89 -0.02 0.71 16 14 C -0.12 -1.39 6.19 -26.51 -0.16 -1.55 16 15 C -0.07 -0.82 5.81 -27.80 -0.16 -0.98 16 16 C -0.19 -2.78 5.75 -104.31 -0.60 -3.38 16 17 C -0.05 -0.68 9.62 -39.54 -0.38 -1.06 16 18 C -0.23 -3.19 9.90 -39.42 -0.39 -3.58 16 19 C 0.24 3.53 6.74 -83.92 -0.57 2.96 16 20 N -0.88 -10.48 9.09 32.34 0.29 -10.19 16 21 C -0.23 -3.78 7.66 -39.03 -0.30 -4.08 16 22 C 0.19 3.04 4.79 -83.86 -0.40 2.64 16 23 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 25 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 26 H 0.05 1.11 6.82 -51.93 -0.35 0.76 16 27 H 0.06 1.41 6.17 -51.93 -0.32 1.09 16 28 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 29 H 0.08 1.29 6.11 -51.93 -0.32 0.98 16 30 H 0.05 0.82 6.56 -51.93 -0.34 0.48 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.40 4.39 8.84 -40.82 -0.36 4.03 16 39 H 0.39 3.78 8.84 -40.82 -0.36 3.42 16 40 H 0.12 2.01 5.90 -52.49 -0.31 1.70 16 LS Contribution 311.44 15.07 4.69 4.69 Total: -1.00 -32.28 311.44 -9.48 -41.76 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.10 Total: 6.80 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -3.66 Total: -24.21 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.26 Total: -46.27 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.28 -9.48 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051296882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.068 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds