Wall clock time and date at job start Mon Mar 30 2020 06:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99608 * 2 1 4 4 H 1.48504 * 109.47119 * 269.99515 * 3 2 1 5 5 H 1.48493 * 109.47482 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47100 * 149.99737 * 3 2 1 7 7 C 1.37870 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99752 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00229 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47264 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47025 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47226 * 174.86886 * 11 10 9 13 13 C 1.46418 * 110.99964 * 67.43746 * 12 11 10 14 14 C 1.53384 * 108.64592 * 181.11625 * 13 12 11 15 15 C 1.53036 * 107.91959 * 68.31785 * 14 13 12 16 16 C 1.50832 * 109.65928 * 312.67419 * 15 14 13 17 17 C 1.38692 * 118.04875 * 195.44798 * 16 15 14 18 18 C 1.37905 * 120.59618 * 180.23176 * 17 16 15 19 19 C 1.38995 * 119.80669 * 0.04730 * 18 17 16 20 20 N 1.39674 * 120.09921 * 179.84916 * 19 18 17 21 21 C 1.38469 * 119.79706 * 359.87107 * 19 18 17 22 22 C 1.38460 * 121.98195 * 15.50407 * 16 15 14 23 23 H 0.96999 * 120.00654 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46775 * 60.00196 * 9 7 2 25 25 H 1.08996 * 109.47142 * 300.00031 * 9 7 2 26 26 H 1.08994 * 109.47070 * 59.99358 * 10 9 7 27 27 H 1.09006 * 109.46801 * 299.99798 * 10 9 7 28 28 H 1.08997 * 109.47304 * 294.86788 * 11 10 9 29 29 H 1.08995 * 109.47608 * 54.86764 * 11 10 9 30 30 H 1.09004 * 109.61297 * 300.86166 * 13 12 11 31 31 H 1.09005 * 109.60800 * 61.20025 * 13 12 11 32 32 H 1.09005 * 109.76885 * 187.92076 * 14 13 12 33 33 H 1.08999 * 109.77495 * 308.65427 * 14 13 12 34 34 H 1.08993 * 109.44001 * 72.73442 * 15 14 13 35 35 H 1.09000 * 109.44104 * 192.62050 * 15 14 13 36 36 H 1.08001 * 119.69874 * 0.25553 * 17 16 15 37 37 H 1.07995 * 120.09364 * 180.02562 * 18 17 16 38 38 H 0.97008 * 119.99786 * 180.02562 * 20 19 18 39 39 H 0.96996 * 120.00581 * 0.02562 * 20 19 18 40 40 H 1.07996 * 119.81444 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5516 -2.6363 0.0022 12 7 6.0413 -4.0157 0.1260 13 6 5.7228 -4.7950 -1.0719 14 6 6.2316 -6.2284 -0.8741 15 6 5.3817 -6.8834 0.2170 16 6 5.2620 -5.9500 1.3958 17 6 4.8165 -6.4742 2.6001 18 6 4.6829 -5.6671 3.7103 19 6 4.9961 -4.3157 3.6237 20 7 4.8601 -3.4920 4.7435 21 6 5.4429 -3.7883 2.4239 22 6 5.5806 -4.6058 1.3021 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6799 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 3.6586 -3.1501 -0.8891 27 1 3.6580 -3.1504 0.8908 28 1 5.9157 -2.2038 -0.9297 29 1 5.9143 -2.0452 0.8431 30 1 4.6434 -4.8078 -1.2238 31 1 6.2089 -4.3480 -1.9391 32 1 6.1312 -6.7870 -1.8048 33 1 7.2771 -6.2095 -0.5666 34 1 4.3887 -7.0992 -0.1772 35 1 5.8543 -7.8123 0.5364 36 1 4.5723 -7.5240 2.6691 37 1 4.3357 -6.0839 4.6441 38 1 5.0787 -2.5489 4.6814 39 1 4.5470 -3.8629 5.5833 40 1 5.6867 -2.7384 2.3564 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051296882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:30 Heat of formation + Delta-G solvation = -4.868680 kcal Electronic energy + Delta-G solvation = -19726.702674 eV Core-core repulsion = 16925.274065 eV Total energy + Delta-G solvation = -2801.428609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59102 -38.48516 -36.55524 -35.17904 -34.17405 -33.08741 -30.71733 -29.42980 -28.63022 -25.83827 -24.55355 -23.63765 -22.69496 -21.81079 -20.21762 -18.97276 -18.05766 -17.80382 -16.91326 -16.38712 -16.17991 -15.86256 -15.51976 -15.23701 -14.93571 -14.50222 -14.37127 -14.22330 -13.77477 -13.76405 -13.51074 -13.18777 -12.93647 -12.53640 -12.47249 -12.30139 -11.93824 -11.81643 -11.63907 -11.49419 -11.43072 -11.26700 -11.07463 -10.78544 -10.34378 -8.74415 -8.31521 -8.13869 -6.36326 0.63505 0.79809 1.34086 1.36240 1.48492 2.34368 2.73181 3.03661 3.09658 3.20895 3.85457 3.94360 4.05980 4.12825 4.23332 4.30903 4.41840 4.50419 4.57365 4.58470 4.65872 4.81134 4.87516 4.94091 4.98755 5.00422 5.04151 5.09589 5.19603 5.28245 5.41485 5.47041 5.53312 5.55353 5.63343 5.72861 5.85370 6.18872 6.27572 6.46303 6.70529 6.71121 7.06576 7.28128 8.85826 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.006054 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.500286 B = 4623.894812 C = 5336.685223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.533 4.533 8 H 0.021 0.979 9 C -0.003 4.003 10 C -0.119 4.119 11 C 0.061 3.939 12 N -0.493 5.493 13 C 0.047 3.953 14 C -0.113 4.113 15 C -0.068 4.068 16 C -0.203 4.203 17 C -0.055 4.055 18 C -0.236 4.236 19 C 0.225 3.775 20 N -0.871 5.871 21 C -0.256 4.256 22 C 0.165 3.835 23 H 0.266 0.734 24 H 0.020 0.980 25 H 0.023 0.977 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.033 0.967 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.401 0.599 39 H 0.406 0.594 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.466 -11.510 4.222 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.571 4.571 8 H 0.040 0.960 9 C -0.041 4.041 10 C -0.158 4.158 11 C -0.065 4.065 12 N -0.205 5.205 13 C -0.079 4.079 14 C -0.150 4.150 15 C -0.105 4.105 16 C -0.208 4.208 17 C -0.074 4.074 18 C -0.259 4.259 19 C 0.118 3.882 20 N -0.411 5.411 21 C -0.282 4.282 22 C 0.065 3.935 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.159 0.841 37 H 0.152 0.848 38 H 0.229 0.771 39 H 0.236 0.764 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.859 -11.383 4.132 19.954 hybrid contribution -1.289 1.128 0.358 1.750 sum 14.570 -10.255 4.490 18.374 Atomic orbital electron populations 1.70084 1.08457 1.28214 1.52670 1.26079 0.95654 1.03716 0.93952 0.85593 0.79515 0.77754 0.79397 1.18890 1.20968 1.16687 1.21468 0.92334 0.92762 1.50553 0.96035 1.19404 0.93674 0.94426 0.96579 1.21862 0.95812 0.97875 1.00213 1.22361 0.92661 0.87864 1.03565 1.58433 1.56241 1.03781 1.02087 1.22304 0.99218 0.94977 0.91371 1.21683 0.99945 0.93627 0.99792 1.20423 1.00210 0.97248 0.92611 1.19611 1.10118 0.93350 0.97713 1.20952 0.95278 1.00007 0.91130 1.20670 1.12406 0.92181 1.00687 1.17690 0.92095 0.90952 0.87424 1.42414 1.76581 1.11302 1.10763 1.20585 1.14689 0.99963 0.92953 1.18457 0.91976 0.92704 0.90348 0.92487 0.96145 0.95895 0.93906 0.93914 0.88917 0.89951 0.94844 0.88627 0.88528 0.90895 0.91703 0.89321 0.84070 0.84772 0.77061 0.76421 0.86519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.24 13.96 21.44 0.30 -60.94 16 2 C 0.00 0.14 5.47 84.65 0.46 0.60 16 3 Si 0.95 44.66 27.47 68.60 1.88 46.54 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 7 C -0.53 -31.93 9.66 25.60 0.25 -31.68 16 8 H 0.02 1.44 7.99 -2.91 -0.02 1.41 16 9 C 0.00 -0.14 4.04 29.85 0.12 -0.02 16 10 C -0.12 -4.89 4.49 30.59 0.14 -4.76 16 11 C 0.06 1.98 4.84 86.30 0.42 2.40 16 12 N -0.49 -14.95 4.72 -695.89 -3.29 -18.23 16 13 C 0.05 1.24 5.25 86.52 0.45 1.70 16 14 C -0.11 -2.37 6.19 30.74 0.19 -2.18 16 15 C -0.07 -1.53 5.81 29.90 0.17 -1.36 16 16 C -0.20 -5.84 5.75 -19.66 -0.11 -5.96 16 17 C -0.05 -1.43 9.62 22.30 0.21 -1.22 16 18 C -0.24 -6.33 9.90 22.37 0.22 -6.11 16 19 C 0.22 6.59 6.74 38.13 0.26 6.85 16 20 N -0.87 -20.19 9.09 -51.59 -0.47 -20.66 16 21 C -0.26 -8.37 7.66 22.63 0.17 -8.20 16 22 C 0.17 5.31 4.79 38.29 0.18 5.49 16 23 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 24 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 25 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 26 H 0.04 1.82 6.82 -2.39 -0.02 1.80 16 27 H 0.04 1.93 6.17 -2.38 -0.01 1.91 16 28 H 0.09 2.69 8.11 -2.39 -0.02 2.67 16 29 H 0.08 2.62 6.11 -2.39 -0.01 2.60 16 30 H 0.03 1.01 6.56 -2.38 -0.02 1.00 16 31 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.40 8.66 8.84 -92.70 -0.82 7.84 16 39 H 0.41 7.32 8.84 -92.71 -0.82 6.50 16 40 H 0.12 3.83 5.90 -2.91 -0.02 3.81 16 Total: -1.00 -71.27 311.44 0.92 -70.35 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.65 Total: 27.38 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 3.14 Total: -44.43 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -3.46 Total: -99.84 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Total: -71.27 0.92 -70.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051296882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.478 kcal (2) G-P(sol) polarization free energy of solvation -71.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds