Wall clock time and date at job start Mon Mar 30 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00574 * 2 1 4 4 H 1.48499 * 109.47540 * 270.00775 * 3 2 1 5 5 H 1.48504 * 109.46895 * 30.00197 * 3 2 1 6 6 H 1.48498 * 109.47121 * 150.00171 * 3 2 1 7 7 C 1.37881 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00061 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47067 * 184.85035 * 9 7 2 11 11 C 1.46898 * 110.99656 * 285.61963 * 10 9 7 12 12 C 1.53004 * 109.46893 * 169.99850 * 11 10 9 13 13 C 1.50704 * 109.47141 * 179.97438 * 12 11 10 14 14 C 1.38121 * 120.03857 * 265.00393 * 13 12 11 15 15 C 1.38270 * 120.07013 * 180.02562 * 14 13 12 16 16 C 1.38304 * 120.15304 * 359.97438 * 15 14 13 17 17 C 1.38084 * 120.07217 * 0.02562 * 16 15 14 18 18 C 1.38890 * 120.03370 * 85.02481 * 13 12 11 19 19 N 1.39682 * 120.07518 * 359.95738 * 18 13 12 20 20 C 1.46901 * 110.99845 * 161.66680 * 10 9 7 21 21 C 1.53003 * 117.49792 * 10.39648 * 20 10 9 22 22 C 1.53001 * 117.49906 * 301.77526 * 20 10 9 23 23 H 0.97008 * 119.99695 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47325 * 64.84778 * 9 7 2 25 25 H 1.08998 * 109.46983 * 304.84851 * 9 7 2 26 26 H 1.09000 * 109.47451 * 50.00218 * 11 10 9 27 27 H 1.09000 * 109.47295 * 289.99888 * 11 10 9 28 28 H 1.09009 * 109.46678 * 60.00218 * 12 11 10 29 29 H 1.08993 * 109.47388 * 300.00395 * 12 11 10 30 30 H 1.08003 * 119.96406 * 0.02562 * 14 13 12 31 31 H 1.07997 * 119.92147 * 179.72361 * 15 14 13 32 32 H 1.07993 * 119.96488 * 179.97438 * 16 15 14 33 33 H 1.08003 * 120.03508 * 179.97438 * 17 16 15 34 34 H 0.97001 * 119.99991 * 359.97438 * 19 18 13 35 35 H 0.96996 * 119.99922 * 180.02562 * 19 18 13 36 36 H 1.08996 * 115.54736 * 156.10073 * 20 10 9 37 37 H 1.08997 * 117.50162 * 0.02562 * 21 20 10 38 38 H 1.09000 * 117.49250 * 145.02060 * 21 20 10 39 39 H 1.08999 * 117.49282 * 214.98256 * 22 20 10 40 40 H 1.08996 * 117.50129 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2012 -3.6134 0.1160 11 6 2.9182 -3.8280 -1.1481 12 6 4.0636 -4.8172 -0.9231 13 6 4.7988 -5.0379 -2.2200 14 6 4.4707 -6.1097 -3.0270 15 6 5.1452 -6.3131 -4.2168 16 6 6.1497 -5.4445 -4.6031 17 6 6.4827 -4.3710 -3.8010 18 6 5.8074 -4.1639 -2.6047 19 7 6.1413 -3.0787 -1.7911 20 6 1.5221 -4.8412 0.5511 21 6 -0.0079 -4.8353 0.5648 22 6 0.7692 -4.7982 1.8823 23 1 -0.4850 0.8401 0.0004 24 1 0.6906 -2.5953 -0.9305 25 1 0.5610 -2.5204 0.8431 26 1 3.3217 -2.8795 -1.5025 27 1 2.2308 -4.2311 -1.8918 28 1 3.6600 -5.7658 -0.5686 29 1 4.7509 -4.4142 -0.1793 30 1 3.6865 -6.7896 -2.7284 31 1 4.8898 -7.1544 -4.8438 32 1 6.6749 -5.6065 -5.5328 33 1 7.2676 -3.6933 -4.1031 34 1 5.6685 -2.9346 -0.9565 35 1 6.8456 -2.4689 -2.0610 36 1 2.0197 -5.7734 0.2841 37 1 -0.5106 -3.9206 0.2507 38 1 -0.5170 -5.7639 0.3068 39 1 0.7713 -5.7024 2.4910 40 1 0.7781 -3.8591 2.4355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052918610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:19 Heat of formation + Delta-G solvation = 51.029480 kcal Electronic energy + Delta-G solvation = -19343.491445 eV Core-core repulsion = 16544.486762 eV Total energy + Delta-G solvation = -2799.004683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.47136 -38.04183 -34.53821 -33.88083 -32.91839 -31.44261 -28.90750 -27.86010 -26.09983 -23.02694 -22.60208 -22.09933 -21.66258 -20.53955 -18.74219 -16.98168 -16.80221 -16.61499 -15.58682 -15.19229 -14.75751 -14.32246 -13.90210 -13.72774 -13.47261 -13.34638 -12.77433 -12.44635 -12.40930 -11.98790 -11.77226 -11.17426 -11.08219 -10.88772 -10.78681 -10.70058 -10.57668 -10.49083 -10.40645 -10.02554 -9.80336 -9.59582 -9.12948 -8.54763 -8.42390 -7.27149 -7.10590 -6.03788 -4.04836 1.60531 1.83377 3.29590 3.36023 3.39025 4.04284 4.13684 4.36961 4.46362 4.86661 5.04502 5.13737 5.30126 5.32259 5.45349 5.55100 5.56038 5.67783 5.71222 5.79523 5.91587 5.95934 6.13978 6.20007 6.22071 6.33314 6.39496 6.56651 6.63669 6.74107 6.76496 6.80869 6.87459 7.10710 7.27779 7.32916 7.71680 7.79324 7.99249 8.10687 8.20802 8.53328 9.01643 9.58791 11.06889 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.006292 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.482216 B = 4449.034217 C = 5802.092969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.189 3.811 10 N -0.505 5.505 11 C 0.071 3.929 12 C -0.070 4.070 13 C -0.151 4.151 14 C -0.071 4.071 15 C -0.184 4.184 16 C -0.081 4.081 17 C -0.203 4.203 18 C 0.226 3.774 19 N -0.874 5.874 20 C 0.024 3.976 21 C -0.226 4.226 22 C -0.175 4.175 23 H 0.261 0.739 24 H -0.009 1.009 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.405 0.595 35 H 0.394 0.606 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.495 -10.899 -4.556 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.064 3.936 10 N -0.227 5.227 11 C -0.057 4.057 12 C -0.108 4.108 13 C -0.156 4.156 14 C -0.089 4.089 15 C -0.204 4.204 16 C -0.099 4.099 17 C -0.226 4.226 18 C 0.120 3.880 19 N -0.413 5.413 20 C -0.086 4.086 21 C -0.265 4.265 22 C -0.213 4.213 23 H 0.071 0.929 24 H 0.009 0.991 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.236 0.764 35 H 0.222 0.778 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.688 -10.636 -4.200 14.988 hybrid contribution -0.219 1.062 -0.439 1.170 sum 9.470 -9.574 -4.639 14.243 Atomic orbital electron populations 1.69952 1.06021 1.26739 1.51074 1.24971 0.94853 0.99217 0.95539 0.86527 0.79804 0.83276 0.77967 1.20817 1.21268 1.19844 1.21132 0.93386 0.89918 1.49845 0.92089 1.19850 0.90549 0.87078 0.96101 1.62029 1.28862 1.03048 1.28719 1.21945 0.94116 0.98940 0.90685 1.20500 0.97004 0.99981 0.93291 1.19453 0.99369 0.97484 0.99336 1.20798 0.98087 0.96291 0.93764 1.20801 0.99849 1.01545 0.98253 1.20770 0.96709 0.94068 0.98398 1.20519 1.04440 1.01808 0.95880 1.17647 0.92541 0.87635 0.90170 1.42675 1.43578 1.29409 1.25649 1.22670 0.90536 0.94976 1.00452 1.23567 0.97014 1.03101 1.02860 1.22972 1.04770 1.02613 0.90977 0.92936 0.99140 0.94225 0.90011 0.95872 0.91613 0.91118 0.86535 0.86910 0.86756 0.86696 0.76376 0.77822 0.87742 0.87572 0.90190 0.89704 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.50 -13.92 8.58 -34.44 -0.30 -14.22 16 8 H 0.06 1.65 7.57 -52.49 -0.40 1.25 16 9 C 0.19 4.83 3.38 -4.97 -0.02 4.82 16 10 N -0.50 -10.65 4.65 -228.08 -1.06 -11.71 16 11 C 0.07 1.36 4.77 -3.82 -0.02 1.34 16 12 C -0.07 -1.08 4.77 -27.88 -0.13 -1.21 16 13 C -0.15 -2.23 5.15 -104.42 -0.54 -2.76 16 14 C -0.07 -0.96 9.67 -39.61 -0.38 -1.34 16 15 C -0.18 -2.29 10.04 -39.55 -0.40 -2.69 16 16 C -0.08 -0.98 10.04 -39.61 -0.40 -1.37 16 17 C -0.20 -2.61 9.90 -39.38 -0.39 -3.00 16 18 C 0.23 3.20 6.74 -83.78 -0.56 2.63 16 19 N -0.87 -11.24 8.99 32.41 0.29 -10.95 16 20 C 0.02 0.43 5.83 -67.71 -0.39 0.04 16 21 C -0.23 -4.09 9.56 -26.73 -0.26 -4.35 16 22 C -0.18 -3.06 9.91 -26.73 -0.26 -3.32 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H -0.01 -0.25 7.82 -51.93 -0.41 -0.66 16 25 H 0.04 1.08 5.63 -51.93 -0.29 0.79 16 26 H 0.08 1.71 7.21 -51.93 -0.37 1.34 16 27 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.07 0.95 6.31 -51.92 -0.33 0.62 16 29 H 0.07 1.09 6.82 -51.93 -0.35 0.74 16 30 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 31 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.41 5.57 6.94 -40.82 -0.28 5.28 16 35 H 0.39 4.16 8.84 -40.82 -0.36 3.79 16 36 H 0.10 1.67 6.34 -51.93 -0.33 1.34 16 37 H 0.11 2.24 6.02 -51.93 -0.31 1.93 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.10 1.91 7.48 -51.93 -0.39 1.53 16 LS Contribution 323.51 15.07 4.88 4.88 Total: -1.00 -29.77 323.51 -10.24 -40.01 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.92 Total: 11.07 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -4.15 Total: -23.98 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.03 Total: -48.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.77 -10.24 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052918610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.039 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds