Wall clock time and date at job start Mon Mar 30 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00574 * 2 1 4 4 H 1.48499 * 109.47540 * 270.00775 * 3 2 1 5 5 H 1.48504 * 109.46895 * 30.00197 * 3 2 1 6 6 H 1.48498 * 109.47121 * 150.00171 * 3 2 1 7 7 C 1.37881 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00061 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47067 * 184.85035 * 9 7 2 11 11 C 1.46898 * 110.99656 * 285.61963 * 10 9 7 12 12 C 1.53004 * 109.46893 * 169.99850 * 11 10 9 13 13 C 1.50704 * 109.47141 * 179.97438 * 12 11 10 14 14 C 1.38121 * 120.03857 * 265.00393 * 13 12 11 15 15 C 1.38270 * 120.07013 * 180.02562 * 14 13 12 16 16 C 1.38304 * 120.15304 * 359.97438 * 15 14 13 17 17 C 1.38084 * 120.07217 * 0.02562 * 16 15 14 18 18 C 1.38890 * 120.03370 * 85.02481 * 13 12 11 19 19 N 1.39682 * 120.07518 * 359.95738 * 18 13 12 20 20 C 1.46901 * 110.99845 * 161.66680 * 10 9 7 21 21 C 1.53003 * 117.49792 * 10.39648 * 20 10 9 22 22 C 1.53001 * 117.49906 * 301.77526 * 20 10 9 23 23 H 0.97008 * 119.99695 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47325 * 64.84778 * 9 7 2 25 25 H 1.08998 * 109.46983 * 304.84851 * 9 7 2 26 26 H 1.09000 * 109.47451 * 50.00218 * 11 10 9 27 27 H 1.09000 * 109.47295 * 289.99888 * 11 10 9 28 28 H 1.09009 * 109.46678 * 60.00218 * 12 11 10 29 29 H 1.08993 * 109.47388 * 300.00395 * 12 11 10 30 30 H 1.08003 * 119.96406 * 0.02562 * 14 13 12 31 31 H 1.07997 * 119.92147 * 179.72361 * 15 14 13 32 32 H 1.07993 * 119.96488 * 179.97438 * 16 15 14 33 33 H 1.08003 * 120.03508 * 179.97438 * 17 16 15 34 34 H 0.97001 * 119.99991 * 359.97438 * 19 18 13 35 35 H 0.96996 * 119.99922 * 180.02562 * 19 18 13 36 36 H 1.08996 * 115.54736 * 156.10073 * 20 10 9 37 37 H 1.08997 * 117.50162 * 0.02562 * 21 20 10 38 38 H 1.09000 * 117.49250 * 145.02060 * 21 20 10 39 39 H 1.08999 * 117.49282 * 214.98256 * 22 20 10 40 40 H 1.08996 * 117.50129 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2012 -3.6134 0.1160 11 6 2.9182 -3.8280 -1.1481 12 6 4.0636 -4.8172 -0.9231 13 6 4.7988 -5.0379 -2.2200 14 6 4.4707 -6.1097 -3.0270 15 6 5.1452 -6.3131 -4.2168 16 6 6.1497 -5.4445 -4.6031 17 6 6.4827 -4.3710 -3.8010 18 6 5.8074 -4.1639 -2.6047 19 7 6.1413 -3.0787 -1.7911 20 6 1.5221 -4.8412 0.5511 21 6 -0.0079 -4.8353 0.5648 22 6 0.7692 -4.7982 1.8823 23 1 -0.4850 0.8401 0.0004 24 1 0.6906 -2.5953 -0.9305 25 1 0.5610 -2.5204 0.8431 26 1 3.3217 -2.8795 -1.5025 27 1 2.2308 -4.2311 -1.8918 28 1 3.6600 -5.7658 -0.5686 29 1 4.7509 -4.4142 -0.1793 30 1 3.6865 -6.7896 -2.7284 31 1 4.8898 -7.1544 -4.8438 32 1 6.6749 -5.6065 -5.5328 33 1 7.2676 -3.6933 -4.1031 34 1 5.6685 -2.9346 -0.9565 35 1 6.8456 -2.4689 -2.0610 36 1 2.0197 -5.7734 0.2841 37 1 -0.5106 -3.9206 0.2507 38 1 -0.5170 -5.7639 0.3068 39 1 0.7713 -5.7024 2.4910 40 1 0.7781 -3.8591 2.4355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052918610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:19 Heat of formation + Delta-G solvation = 32.866978 kcal Electronic energy + Delta-G solvation = -19344.279030 eV Core-core repulsion = 16544.486762 eV Total energy + Delta-G solvation = -2799.792268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56419 -39.55969 -35.75120 -35.23181 -34.76411 -32.93284 -30.17582 -29.22618 -27.77618 -24.74085 -24.15003 -23.16850 -23.09749 -21.68780 -20.35540 -18.74061 -17.92287 -17.77947 -17.10924 -16.78122 -16.34373 -15.88731 -15.16068 -14.88898 -14.76570 -14.53482 -14.19277 -14.05119 -13.79529 -13.57305 -13.29476 -12.94406 -12.68779 -12.46483 -12.28861 -12.25863 -11.99288 -11.90197 -11.62088 -11.53734 -11.37660 -11.09453 -11.07881 -10.60925 -9.56708 -8.83775 -8.28537 -8.20428 -6.30256 0.59693 0.83939 1.38415 1.39695 1.50886 2.38202 2.89258 3.04661 3.11654 3.15073 3.38599 3.95573 4.00964 4.11518 4.14733 4.23315 4.27854 4.42160 4.50595 4.68252 4.73506 4.73852 4.79240 4.82196 5.00647 5.03906 5.13953 5.16364 5.24150 5.31105 5.33644 5.37181 5.55127 5.65051 5.75966 5.84614 6.07191 6.15010 6.38082 6.64534 6.70103 6.85340 7.02902 7.38768 8.90145 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.006292 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.482216 B = 4449.034217 C = 5802.092969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.210 3.790 10 N -0.511 5.511 11 C 0.081 3.919 12 C -0.052 4.052 13 C -0.175 4.175 14 C -0.079 4.079 15 C -0.190 4.190 16 C -0.081 4.081 17 C -0.212 4.212 18 C 0.209 3.791 19 N -0.874 5.874 20 C 0.014 3.986 21 C -0.228 4.228 22 C -0.165 4.165 23 H 0.263 0.737 24 H -0.045 1.045 25 H 0.015 0.985 26 H 0.056 0.944 27 H 0.011 0.989 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.400 0.600 35 H 0.404 0.596 36 H 0.138 0.862 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.213 -12.118 -5.059 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.084 3.916 10 N -0.233 5.233 11 C -0.047 4.047 12 C -0.089 4.089 13 C -0.181 4.181 14 C -0.098 4.098 15 C -0.210 4.210 16 C -0.099 4.099 17 C -0.235 4.235 18 C 0.103 3.897 19 N -0.413 5.413 20 C -0.095 4.095 21 C -0.267 4.267 22 C -0.203 4.203 23 H 0.072 0.928 24 H -0.027 1.027 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.150 0.850 34 H 0.229 0.771 35 H 0.233 0.767 36 H 0.156 0.844 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.431 -11.870 -4.708 17.138 hybrid contribution -0.768 1.385 -0.336 1.619 sum 10.662 -10.484 -5.044 15.781 Atomic orbital electron populations 1.70090 1.07726 1.27760 1.52010 1.25890 0.95705 1.03094 0.94981 0.85422 0.78743 0.78449 0.78254 1.20117 1.20863 1.18608 1.21479 0.93617 0.91088 1.49582 0.91929 1.19419 0.90438 0.88638 0.93141 1.61951 1.28002 1.03486 1.29822 1.21860 0.94759 0.98745 0.89349 1.20278 0.95415 0.99137 0.94116 1.19474 1.00328 0.98781 0.99492 1.21037 0.98491 0.96157 0.94120 1.21131 0.99570 1.02254 0.98042 1.21165 0.96363 0.93296 0.99114 1.20818 1.04732 1.02482 0.95465 1.17905 0.92934 0.87895 0.90936 1.42667 1.43790 1.29526 1.25318 1.22932 0.90710 0.94738 1.01146 1.23483 0.96821 1.02740 1.03668 1.23014 1.03567 1.02990 0.90682 0.92805 1.02730 0.96694 0.92584 0.97042 0.90260 0.91294 0.85408 0.84658 0.84033 0.84992 0.77078 0.76709 0.84424 0.91618 0.86929 0.85695 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.01 13.29 21.45 0.28 -56.73 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.52 -29.59 8.58 25.60 0.22 -29.37 16 8 H 0.06 3.46 7.57 -2.91 -0.02 3.44 16 9 C 0.21 11.27 3.38 85.56 0.29 11.56 16 10 N -0.51 -22.02 4.65 -875.51 -4.07 -26.09 16 11 C 0.08 3.13 4.77 86.31 0.41 3.54 16 12 C -0.05 -1.56 4.77 29.85 0.14 -1.41 16 13 C -0.18 -5.00 5.15 -19.73 -0.10 -5.10 16 14 C -0.08 -2.02 9.67 22.25 0.22 -1.80 16 15 C -0.19 -4.25 10.04 22.29 0.22 -4.03 16 16 C -0.08 -1.74 10.04 22.25 0.22 -1.52 16 17 C -0.21 -5.05 9.90 22.40 0.22 -4.83 16 18 C 0.21 5.73 6.74 38.21 0.26 5.98 16 19 N -0.87 -22.07 8.99 -51.37 -0.46 -22.53 16 20 C 0.01 0.51 5.83 44.92 0.26 0.77 16 21 C -0.23 -8.24 9.56 30.60 0.29 -7.94 16 22 C -0.16 -5.60 9.91 30.59 0.30 -5.30 16 23 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 24 H -0.04 -2.68 7.82 -2.39 -0.02 -2.70 16 25 H 0.02 0.87 5.63 -2.39 -0.01 0.86 16 26 H 0.06 2.43 7.21 -2.39 -0.02 2.42 16 27 H 0.01 0.46 8.12 -2.39 -0.02 0.44 16 28 H 0.08 2.14 6.31 -2.38 -0.02 2.12 16 29 H 0.07 2.09 6.82 -2.39 -0.02 2.07 16 30 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 31 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.40 11.00 6.94 -92.71 -0.64 10.36 16 35 H 0.40 8.21 8.84 -92.71 -0.82 7.39 16 36 H 0.14 4.01 6.34 -2.39 -0.02 3.99 16 37 H 0.07 2.93 6.02 -2.39 -0.01 2.91 16 38 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.12 3.24 8.14 -2.39 -0.02 3.23 16 40 H 0.07 2.75 7.48 -2.39 -0.02 2.73 16 Total: -1.00 -66.20 323.51 0.79 -65.42 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.42 Total: 32.23 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 3.42 Total: -38.92 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -4.25 Total: -105.35 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -66.20 0.79 -65.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052918610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.283 kcal (2) G-P(sol) polarization free energy of solvation -66.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds