Wall clock time and date at job start Mon Mar 30 2020 06:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00091 * 2 1 4 4 H 1.48496 * 109.47231 * 269.99632 * 3 2 1 5 5 H 1.48508 * 109.47154 * 29.99825 * 3 2 1 6 6 H 1.48504 * 109.47258 * 149.99560 * 3 2 1 7 7 C 1.37875 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99967 * 192.14598 * 7 2 1 9 9 C 1.50693 * 120.00429 * 12.14410 * 7 2 1 10 10 H 1.08997 * 109.47737 * 185.63702 * 9 7 2 11 11 C 1.50704 * 109.47310 * 65.62959 * 9 7 2 12 12 C 1.38227 * 120.00493 * 276.71703 * 11 9 7 13 13 C 1.38230 * 120.00290 * 179.97438 * 12 11 9 14 14 C 1.38236 * 120.00206 * 0.06799 * 13 12 11 15 15 C 1.38232 * 119.99497 * 359.90774 * 14 13 12 16 16 C 1.38233 * 119.99368 * 96.68906 * 11 9 7 17 17 N 1.46909 * 109.46903 * 305.63543 * 9 7 2 18 18 C 1.46850 * 110.99690 * 170.78919 * 17 9 7 19 19 C 1.53044 * 109.52010 * 185.83987 * 18 17 9 20 20 C 1.53117 * 109.27723 * 300.82192 * 19 18 17 21 21 N 1.46902 * 109.52147 * 177.56260 * 20 19 18 22 22 C 1.53115 * 109.16145 * 57.65369 * 20 19 18 23 23 C 1.46841 * 110.99920 * 294.99558 * 17 9 7 24 24 H 0.97002 * 120.00000 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99639 * 359.69151 * 12 11 9 26 26 H 1.08004 * 120.00558 * 179.97438 * 13 12 11 27 27 H 1.07997 * 120.00515 * 180.02562 * 14 13 12 28 28 H 1.08005 * 120.00130 * 180.02562 * 15 14 13 29 29 H 1.07999 * 120.00616 * 0.02562 * 16 11 9 30 30 H 1.09000 * 109.46414 * 305.84888 * 18 17 9 31 31 H 1.08993 * 109.46517 * 65.82182 * 18 17 9 32 32 H 1.08997 * 109.49824 * 180.87600 * 19 18 17 33 33 H 1.09004 * 109.50390 * 60.76014 * 19 18 17 34 34 H 1.09003 * 109.52152 * 297.74930 * 20 19 18 35 35 H 1.00905 * 110.99916 * 60.31262 * 21 20 19 36 36 H 1.00902 * 110.99453 * 184.26945 * 21 20 19 37 37 H 1.09005 * 109.50169 * 182.40942 * 22 20 19 38 38 H 1.08994 * 109.50684 * 62.29203 * 22 20 19 39 39 H 1.08997 * 109.46826 * 294.17934 * 23 17 9 40 40 H 1.09002 * 109.46398 * 54.14736 * 23 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0664 -1.2045 0.1973 9 6 1.2764 -2.4847 -0.2734 10 1 1.9581 -3.3234 -0.1330 11 6 0.7674 -2.4830 -1.6919 12 6 -0.4278 -1.8590 -1.9967 13 6 -0.8944 -1.8570 -3.2979 14 6 -0.1665 -2.4803 -4.2941 15 6 1.0290 -3.1039 -3.9894 16 6 1.4961 -3.1051 -2.6883 17 7 0.1436 -2.6140 0.6531 18 6 -0.7162 -3.7439 0.2784 19 6 -1.9581 -3.7600 1.1727 20 6 -1.5257 -3.8866 2.6361 21 7 -2.7106 -3.8438 3.5035 22 6 -0.5926 -2.7244 2.9867 23 6 0.6097 -2.7384 2.0400 24 1 -0.4850 0.8401 -0.0004 25 1 -0.9993 -1.3768 -1.2173 26 1 -1.8284 -1.3698 -3.5360 27 1 -0.5308 -2.4785 -5.3108 28 1 1.5980 -3.5906 -4.7678 29 1 2.4299 -3.5926 -2.4503 30 1 -1.0201 -3.6394 -0.7631 31 1 -0.1660 -4.6764 0.4043 32 1 -2.5885 -4.6078 0.9047 33 1 -2.5163 -2.8336 1.0370 34 1 -1.0013 -4.8312 2.7805 35 1 -3.3419 -4.6017 3.2908 36 1 -2.4463 -3.8556 4.4772 37 1 -0.2473 -2.8325 4.0150 38 1 -1.1291 -1.7817 2.8797 39 1 1.1538 -3.6755 2.1576 40 1 1.2690 -1.9036 2.2779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:34 Heat of formation + Delta-G solvation = 23.248071 kcal Electronic energy + Delta-G solvation = -20519.207763 eV Core-core repulsion = 17718.998388 eV Total energy + Delta-G solvation = -2800.209375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52566 -39.06075 -36.35058 -34.19288 -32.40402 -31.73978 -31.18049 -30.00451 -28.05628 -24.87563 -23.83534 -23.15232 -22.77383 -21.43481 -20.33983 -18.27512 -17.32590 -16.82229 -16.44665 -16.35960 -15.91257 -15.71520 -15.31736 -15.12079 -14.77492 -14.16367 -13.97516 -13.88255 -13.60929 -13.35320 -13.24044 -12.76917 -12.66830 -12.58873 -12.30478 -12.10632 -11.93230 -11.72246 -11.48391 -11.25514 -11.12789 -10.85670 -10.39056 -9.53851 -9.45280 -9.07477 -8.48491 -7.80918 -6.06451 0.82099 0.94531 1.42073 1.46668 1.51396 2.49157 3.17777 3.35834 3.55220 3.69049 3.99835 4.07743 4.33531 4.36821 4.40639 4.45961 4.52135 4.61071 4.68719 4.73294 4.84945 4.97291 5.00785 5.05877 5.07849 5.20753 5.22522 5.39883 5.40615 5.48027 5.60784 5.65245 5.78701 5.87202 6.05021 6.23687 6.33075 6.36016 6.55965 6.64387 6.71773 6.97646 7.17088 7.59686 9.06278 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.009767 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.755681 B = 2866.232956 C = 4066.877856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.062 3.938 3 Si 0.923 3.077 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.550 4.550 8 H 0.040 0.960 9 C 0.249 3.751 10 H -0.023 1.023 11 C -0.054 4.054 12 C -0.093 4.093 13 C -0.154 4.154 14 C -0.145 4.145 15 C -0.136 4.136 16 C -0.154 4.154 17 N -0.490 5.490 18 C 0.052 3.948 19 C -0.093 4.093 20 C 0.102 3.898 21 N -0.847 5.847 22 C -0.094 4.094 23 C 0.080 3.920 24 H 0.253 0.747 25 H 0.144 0.856 26 H 0.121 0.879 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.003 0.997 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.030 0.970 35 H 0.348 0.652 36 H 0.347 0.653 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.003 0.997 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 -7.557 0.377 8.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.146 4.146 3 Si 0.751 3.249 4 H -0.212 1.212 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.588 4.588 8 H 0.058 0.942 9 C 0.142 3.858 10 H -0.005 1.005 11 C -0.055 4.055 12 C -0.112 4.112 13 C -0.172 4.172 14 C -0.163 4.163 15 C -0.154 4.154 16 C -0.172 4.172 17 N -0.214 5.214 18 C -0.077 4.077 19 C -0.131 4.131 20 C -0.009 4.009 21 N -0.379 5.379 22 C -0.133 4.133 23 C -0.049 4.049 24 H 0.062 0.938 25 H 0.161 0.839 26 H 0.139 0.861 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.021 0.979 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.021 0.979 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.683 -6.306 0.039 7.855 hybrid contribution 1.673 -0.463 0.379 1.777 sum -3.010 -6.769 0.418 7.420 Atomic orbital electron populations 1.70164 1.05816 1.25292 1.44417 1.25257 0.95224 1.00001 0.94098 0.86140 0.79302 0.81926 0.77561 1.21240 1.20894 1.20256 1.20888 0.93631 0.91862 1.52414 0.94181 1.18145 0.87299 0.93464 0.86846 1.00486 1.20342 0.93876 0.94658 0.96620 1.21787 0.96523 0.95836 0.97018 1.21452 1.00710 1.01311 0.93749 1.21220 0.95793 0.99883 0.99415 1.21160 0.97166 1.01252 0.95814 1.21127 1.00003 1.02092 0.94015 1.61966 1.19973 1.38680 1.00780 1.22133 0.94796 0.91227 0.99509 1.21431 0.96568 1.01553 0.93581 1.21204 0.90609 0.95995 0.93142 1.58628 1.17040 1.53939 1.08279 1.21450 0.95473 0.98654 0.97674 1.21656 0.95909 0.97658 0.89657 0.93765 0.83875 0.86079 0.84510 0.84584 0.87381 0.91843 0.97856 0.91139 0.92513 0.95210 0.83875 0.83937 0.91393 0.92789 0.97916 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.55 9.08 21.45 0.19 -43.36 16 2 C 0.06 3.25 5.13 84.65 0.43 3.69 16 3 Si 0.92 42.90 29.55 68.60 2.03 44.93 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.55 -29.60 7.49 25.60 0.19 -29.40 16 8 H 0.04 2.21 7.84 -2.91 -0.02 2.19 16 9 C 0.25 12.30 1.98 43.42 0.09 12.39 16 10 H -0.02 -1.14 8.03 -2.39 -0.02 -1.16 16 11 C -0.05 -2.51 3.70 -19.87 -0.07 -2.59 16 12 C -0.09 -4.26 6.37 22.27 0.14 -4.11 16 13 C -0.15 -6.02 10.05 22.27 0.22 -5.79 16 14 C -0.15 -5.00 10.05 22.27 0.22 -4.78 16 15 C -0.14 -4.81 10.05 22.27 0.22 -4.58 16 16 C -0.15 -6.40 9.68 22.27 0.22 -6.18 16 17 N -0.49 -22.21 2.54 -879.92 -2.24 -24.45 16 18 C 0.05 2.08 4.92 86.33 0.42 2.51 16 19 C -0.09 -3.17 5.68 30.65 0.17 -2.99 16 20 C 0.10 3.12 3.31 44.99 0.15 3.27 16 21 N -0.85 -21.16 9.25 -168.35 -1.56 -22.72 16 22 C -0.09 -3.36 5.64 30.65 0.17 -3.19 16 23 C 0.08 3.40 5.31 86.33 0.46 3.86 16 24 H 0.25 13.03 8.31 -92.71 -0.77 12.26 16 25 H 0.14 7.24 5.39 -2.91 -0.02 7.22 16 26 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 27 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 28 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 29 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.06 2.67 5.35 -2.39 -0.01 2.66 16 31 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.35 7.14 9.04 -89.69 -0.81 6.33 16 36 H 0.35 7.33 8.99 -89.69 -0.81 6.52 16 37 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.06 2.68 7.07 -2.39 -0.02 2.67 16 Total: -1.00 -57.35 310.35 0.89 -56.46 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.58 Total: 27.05 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 3.05 Total: -37.91 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -3.60 Total: -90.53 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -57.35 0.89 -56.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.711 kcal (2) G-P(sol) polarization free energy of solvation -57.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds