Wall clock time and date at job start Mon Mar 30 2020 06:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99898 * 2 1 4 4 H 1.48496 * 109.47165 * 240.00199 * 3 2 1 5 5 H 1.48500 * 109.47220 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47006 * 120.00092 * 3 2 1 7 7 C 1.37869 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99968 * 174.28370 * 7 2 1 9 9 C 1.50696 * 120.00516 * 354.28000 * 7 2 1 10 10 H 1.09004 * 109.46899 * 29.72214 * 9 7 2 11 11 C 1.50700 * 109.47312 * 269.73320 * 9 7 2 12 12 C 1.38232 * 120.00577 * 105.96078 * 11 9 7 13 13 C 1.38238 * 120.00402 * 180.02562 * 12 11 9 14 14 C 1.38235 * 119.99838 * 359.97438 * 13 12 11 15 15 C 1.38236 * 119.99714 * 0.25452 * 14 13 12 16 16 C 1.38235 * 119.99663 * 285.98425 * 11 9 7 17 17 N 1.46897 * 109.47471 * 149.72890 * 9 7 2 18 18 C 1.46845 * 111.00114 * 304.47924 * 17 9 7 19 19 C 1.53029 * 109.52458 * 174.16144 * 18 17 9 20 20 C 1.53115 * 109.28266 * 59.18122 * 19 18 17 21 21 C 1.53117 * 109.15943 * 302.34710 * 20 19 18 22 22 H 1.09002 * 109.50166 * 297.71328 * 21 20 19 23 23 N 1.46897 * 109.50699 * 177.59341 * 21 20 19 24 24 C 1.46844 * 111.00215 * 180.27151 * 17 9 7 25 25 H 0.97000 * 120.00315 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99789 * 0.02562 * 12 11 9 27 27 H 1.07996 * 120.00133 * 179.97438 * 13 12 11 28 28 H 1.07994 * 119.99972 * 179.97438 * 14 13 12 29 29 H 1.08006 * 119.99770 * 179.72959 * 15 14 13 30 30 H 1.08005 * 120.00515 * 359.97438 * 16 11 9 31 31 H 1.09003 * 109.46544 * 294.18148 * 18 17 9 32 32 H 1.09007 * 109.45837 * 54.14362 * 18 17 9 33 33 H 1.09006 * 109.50127 * 299.23763 * 19 18 17 34 34 H 1.08999 * 109.53774 * 179.14455 * 19 18 17 35 35 H 1.09000 * 109.52746 * 182.44196 * 20 19 18 36 36 H 1.09001 * 109.52122 * 62.24536 * 20 19 18 37 37 H 1.00898 * 110.99718 * 60.19328 * 23 21 20 38 38 H 1.00896 * 111.00199 * 184.14985 * 23 21 20 39 39 H 1.09007 * 109.46200 * 305.85537 * 24 17 9 40 40 H 1.09005 * 109.46471 * 65.81700 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0804 -1.1963 -0.0937 9 6 1.2567 -2.4959 0.1289 10 1 0.2614 -2.3877 -0.3022 11 6 1.1358 -2.8631 1.5855 12 6 -0.0774 -2.7277 2.2341 13 6 -0.1882 -3.0641 3.5704 14 6 0.9142 -3.5363 4.2579 15 6 2.1286 -3.6671 3.6105 16 6 2.2383 -3.3348 2.2732 17 7 1.9867 -3.5530 -0.5835 18 6 2.2168 -3.1807 -1.9853 19 6 3.1016 -4.2339 -2.6556 20 6 2.4113 -5.5984 -2.5772 21 6 2.1395 -5.9405 -1.1097 22 1 3.0850 -6.0155 -0.5724 23 7 1.4256 -7.2218 -1.0288 24 6 1.2825 -4.8377 -0.4841 25 1 -0.4850 0.8400 0.0004 26 1 -0.9388 -2.3592 1.6969 27 1 -1.1359 -2.9579 4.0772 28 1 0.8278 -3.7986 5.3019 29 1 2.9909 -4.0320 4.1488 30 1 3.1862 -3.4407 1.7665 31 1 1.2616 -3.1232 -2.5073 32 1 2.7120 -2.2105 -2.0267 33 1 4.0623 -4.2821 -2.1426 34 1 3.2600 -3.9657 -3.7001 35 1 3.0575 -6.3593 -3.0150 36 1 1.4686 -5.5615 -3.1232 37 1 1.9717 -7.9663 -1.4358 38 1 1.1752 -7.4366 -0.0754 39 1 1.0991 -5.0712 0.5647 40 1 0.3316 -4.7726 -1.0131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:50 Heat of formation + Delta-G solvation = 3.811126 kcal Electronic energy + Delta-G solvation = -20193.718679 eV Core-core repulsion = 17392.666454 eV Total energy + Delta-G solvation = -2801.052225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55448 -39.21201 -36.24622 -34.41196 -33.41433 -31.55218 -31.32667 -29.47516 -28.09222 -25.60263 -23.94613 -23.21865 -22.70715 -21.40535 -20.42460 -18.45113 -17.41877 -17.12891 -16.50075 -16.22671 -16.04113 -15.85247 -15.40113 -15.31648 -14.73652 -14.36535 -14.08882 -13.91657 -13.63500 -13.52074 -13.29882 -12.94771 -12.81768 -12.68077 -12.55005 -12.08403 -11.99219 -11.72850 -11.58841 -11.49796 -11.13945 -11.02843 -10.60802 -9.58798 -9.57481 -9.27376 -8.96251 -8.15198 -6.24807 0.74669 0.79611 1.39234 1.41276 1.47944 2.38308 3.01330 3.22609 3.30446 3.74961 3.92994 4.06131 4.25560 4.27640 4.31716 4.38557 4.44694 4.52881 4.63301 4.71284 4.85693 4.91196 4.94158 4.98530 5.04794 5.11935 5.16159 5.23117 5.33831 5.42777 5.46741 5.52389 5.67849 5.80397 5.84171 6.06065 6.12551 6.24110 6.36392 6.45859 6.65379 6.77682 6.92811 7.41628 8.90138 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.014198 B = 0.009385 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.582036 B = 2982.770115 C = 4403.649575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.018 3.982 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.244 3.756 10 H -0.012 1.012 11 C -0.043 4.043 12 C -0.142 4.142 13 C -0.131 4.131 14 C -0.143 4.143 15 C -0.129 4.129 16 C -0.113 4.113 17 N -0.527 5.527 18 C 0.068 3.932 19 C -0.106 4.106 20 C -0.105 4.105 21 C 0.104 3.896 22 H 0.043 0.957 23 N -0.850 5.850 24 C 0.070 3.930 25 H 0.261 0.739 26 H 0.088 0.912 27 H 0.131 0.869 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.114 0.886 31 H -0.003 1.003 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.353 0.647 38 H 0.345 0.655 39 H 0.057 0.943 40 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.980 -11.076 1.577 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.138 3.862 10 H 0.006 0.994 11 C -0.044 4.044 12 C -0.161 4.161 13 C -0.149 4.149 14 C -0.160 4.160 15 C -0.147 4.147 16 C -0.132 4.132 17 N -0.252 5.252 18 C -0.060 4.060 19 C -0.144 4.144 20 C -0.143 4.143 21 C -0.007 4.007 22 H 0.061 0.939 23 N -0.382 5.382 24 C -0.059 4.059 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.148 0.852 28 H 0.164 0.836 29 H 0.159 0.841 30 H 0.132 0.868 31 H 0.015 0.985 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.075 0.925 40 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 4.730 -10.658 1.318 11.734 hybrid contribution -0.254 1.241 0.067 1.268 sum 4.475 -9.417 1.386 10.518 Atomic orbital electron populations 1.70054 1.07278 1.27443 1.50692 1.25698 0.95563 1.02403 0.94524 0.85686 0.78436 0.79080 0.78957 1.19178 1.21189 1.19876 1.21061 0.93377 0.90144 1.49624 0.92330 1.18156 0.92040 0.88793 0.87245 0.99373 1.20331 0.92820 0.93527 0.97744 1.21046 0.97378 1.01678 0.95955 1.21252 0.99807 1.00126 0.93665 1.21259 0.92593 1.01635 1.00561 1.21388 0.98444 1.00688 0.94164 1.20964 0.98027 0.99639 0.94559 1.61963 1.48220 1.02132 1.12881 1.21882 0.97081 0.99366 0.87690 1.21555 0.98680 0.93760 1.00428 1.21544 1.00409 0.97136 0.95186 1.21160 0.94399 0.88859 0.96298 0.93913 1.58590 1.49690 1.04120 1.25773 1.21896 0.94222 0.90562 0.99203 0.92966 0.89372 0.85159 0.83649 0.84076 0.86813 0.98489 0.91499 0.91038 0.90093 0.89834 0.93000 0.83262 0.84156 0.92471 0.98078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 12.83 21.44 0.28 -53.13 16 2 C 0.02 1.01 5.45 84.65 0.46 1.47 16 3 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.50 -27.36 6.76 25.60 0.17 -27.19 16 8 H 0.06 3.18 7.68 -2.91 -0.02 3.16 16 9 C 0.24 12.43 1.76 43.42 0.08 12.51 16 10 H -0.01 -0.69 7.17 -2.39 -0.02 -0.71 16 11 C -0.04 -2.01 3.51 -19.87 -0.07 -2.08 16 12 C -0.14 -6.47 9.67 22.27 0.22 -6.25 16 13 C -0.13 -4.82 10.05 22.27 0.22 -4.59 16 14 C -0.14 -4.58 10.05 22.27 0.22 -4.35 16 15 C -0.13 -4.35 10.05 22.27 0.22 -4.12 16 16 C -0.11 -4.65 8.80 22.27 0.20 -4.45 16 17 N -0.53 -22.72 4.01 -879.94 -3.53 -26.25 16 18 C 0.07 2.79 5.22 86.32 0.45 3.24 16 19 C -0.11 -3.20 6.09 30.64 0.19 -3.02 16 20 C -0.10 -2.88 5.58 30.67 0.17 -2.71 16 21 C 0.10 3.08 3.41 44.97 0.15 3.23 16 22 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 23 N -0.85 -20.62 9.25 -168.47 -1.56 -22.18 16 24 C 0.07 2.70 4.75 86.33 0.41 3.11 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.09 4.42 7.99 -2.91 -0.02 4.40 16 27 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 28 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 29 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 30 H 0.11 4.68 7.90 -2.91 -0.02 4.66 16 31 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.07 3.00 6.65 -2.38 -0.02 2.98 16 33 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.35 6.58 9.04 -89.70 -0.81 5.77 16 38 H 0.35 7.82 8.99 -89.70 -0.81 7.01 16 39 H 0.06 2.27 6.59 -2.38 -0.02 2.25 16 40 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 Total: -1.00 -62.52 319.62 -0.28 -62.80 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.59 Total: 28.05 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.10 Total: -35.23 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -4.81 Total: -101.55 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -62.52 -0.28 -62.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.613 kcal (2) G-P(sol) polarization free energy of solvation -62.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds