Wall clock time and date at job start Mon Mar 30 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00376 * 2 1 4 4 H 1.48494 * 109.47579 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46832 * 300.00227 * 3 2 1 6 6 H 1.48503 * 109.46835 * 59.99472 * 3 2 1 7 7 C 1.37879 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00435 * 173.36089 * 7 2 1 9 9 C 1.50703 * 119.99859 * 353.63293 * 7 2 1 10 10 H 1.08996 * 109.47380 * 0.89215 * 9 7 2 11 11 C 1.50701 * 109.46960 * 120.89731 * 9 7 2 12 12 C 1.38232 * 120.00293 * 72.88544 * 11 9 7 13 13 C 1.38240 * 119.99539 * 179.76626 * 12 11 9 14 14 C 1.38236 * 120.00290 * 0.51021 * 13 12 11 15 15 C 1.38233 * 119.99589 * 359.74594 * 14 13 12 16 16 C 1.38234 * 119.99449 * 253.16588 * 11 9 7 17 17 N 1.46902 * 109.47262 * 240.89019 * 9 7 2 18 18 C 1.46846 * 111.00153 * 176.91269 * 17 9 7 19 19 C 1.53036 * 109.52239 * 174.16620 * 18 17 9 20 20 C 1.53112 * 109.28296 * 59.17880 * 19 18 17 21 21 C 1.53119 * 109.15882 * 302.34411 * 20 19 18 22 22 H 1.08998 * 109.50748 * 297.71219 * 21 20 19 23 23 N 1.46905 * 109.50536 * 177.59405 * 21 20 19 24 24 C 1.46850 * 110.99796 * 52.70119 * 17 9 7 25 25 H 0.97004 * 120.00062 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99933 * 0.02562 * 12 11 9 27 27 H 1.08004 * 119.99582 * 180.22968 * 13 12 11 28 28 H 1.07997 * 119.99664 * 179.72307 * 14 13 12 29 29 H 1.08011 * 119.99506 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.00371 * 359.97438 * 16 11 9 31 31 H 1.09003 * 109.45921 * 294.17821 * 18 17 9 32 32 H 1.09002 * 109.46056 * 54.15540 * 18 17 9 33 33 H 1.09001 * 109.49874 * 179.12139 * 19 18 17 34 34 H 1.08997 * 109.49906 * 299.19116 * 19 18 17 35 35 H 1.09004 * 109.52612 * 62.24744 * 20 19 18 36 36 H 1.09003 * 109.52596 * 182.44154 * 20 19 18 37 37 H 1.00901 * 110.99665 * 59.99586 * 23 21 20 38 38 H 1.00893 * 111.00103 * 183.95717 * 23 21 20 39 39 H 1.08994 * 109.46294 * 305.85866 * 24 17 9 40 40 H 1.09001 * 109.45928 * 65.82041 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0790 -1.1973 -0.1076 9 6 1.2579 -2.4951 0.1459 10 1 0.1893 -2.2943 0.2217 11 6 1.5219 -3.3628 -1.0577 12 6 2.7538 -3.9695 -1.2155 13 6 2.9942 -4.7694 -2.3171 14 6 2.0062 -4.9540 -3.2661 15 6 0.7760 -4.3429 -3.1109 16 6 0.5338 -3.5473 -2.0067 17 7 1.7132 -3.1882 1.3584 18 6 0.9548 -4.4272 1.5726 19 6 1.5501 -5.1932 2.7562 20 6 1.4915 -4.3140 4.0084 21 6 2.2478 -3.0095 3.7423 22 1 3.2959 -3.2309 3.5411 23 7 2.1475 -2.1356 4.9190 24 6 1.6322 -2.3067 2.5302 25 1 -0.4850 0.8401 -0.0004 26 1 3.5271 -3.8220 -0.4762 27 1 3.9555 -5.2464 -2.4386 28 1 2.1956 -5.5753 -4.1289 29 1 0.0041 -4.4868 -3.8526 30 1 -0.4274 -3.0700 -1.8854 31 1 -0.0864 -4.1837 1.7843 32 1 1.0082 -5.0452 0.6763 33 1 0.9773 -6.1051 2.9246 34 1 2.5870 -5.4497 2.5391 35 1 0.4519 -4.0900 4.2479 36 1 1.9539 -4.8391 4.8442 37 1 2.5446 -2.5792 5.7336 38 1 2.5837 -1.2428 4.7445 39 1 2.1774 -1.3846 2.3293 40 1 0.5879 -2.0731 2.7373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055019658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:54 Heat of formation + Delta-G solvation = 20.491700 kcal Electronic energy + Delta-G solvation = -20172.143156 eV Core-core repulsion = 17371.814255 eV Total energy + Delta-G solvation = -2800.328901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.92151 -37.75158 -34.59765 -32.86846 -31.51101 -30.17389 -29.99485 -27.56650 -26.53785 -23.95334 -22.07801 -21.62096 -21.59063 -19.67193 -18.88418 -16.48341 -15.97707 -15.40706 -15.13586 -14.61036 -14.56100 -14.20132 -13.96748 -13.75587 -13.15150 -12.77238 -12.56404 -12.43449 -11.98950 -11.83747 -11.64766 -11.55612 -11.03239 -10.97226 -10.90336 -10.46680 -10.42006 -10.24245 -10.00511 -9.60457 -9.52083 -9.35491 -8.65947 -8.32166 -8.08667 -7.71457 -7.10594 -6.16019 -4.19098 2.24368 2.28473 3.22265 3.31386 3.35579 4.30869 4.57274 4.77824 5.08925 5.28332 5.37451 5.46996 5.62674 5.63936 5.72883 5.82051 5.86026 6.07019 6.12076 6.19447 6.25784 6.36233 6.42798 6.44715 6.50415 6.58212 6.69607 6.83062 6.87358 6.95044 7.09023 7.27403 7.31167 7.41224 7.50731 7.72346 7.76504 7.77707 7.82894 8.04337 8.30550 8.59546 8.94846 9.43484 10.89326 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.010402 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.315542 B = 2691.189720 C = 4378.454202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.495 4.495 8 H 0.062 0.938 9 C 0.225 3.775 10 H 0.052 0.948 11 C -0.023 4.023 12 C -0.101 4.101 13 C -0.134 4.134 14 C -0.152 4.152 15 C -0.128 4.128 16 C -0.125 4.125 17 N -0.534 5.534 18 C 0.052 3.948 19 C -0.112 4.112 20 C -0.109 4.109 21 C 0.090 3.910 22 H 0.036 0.964 23 N -0.849 5.849 24 C 0.084 3.916 25 H 0.264 0.736 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.332 0.668 38 H 0.341 0.659 39 H 0.085 0.915 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 -7.760 2.894 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.120 3.880 10 H 0.070 0.930 11 C -0.024 4.024 12 C -0.120 4.120 13 C -0.152 4.152 14 C -0.171 4.171 15 C -0.147 4.147 16 C -0.144 4.144 17 N -0.259 5.259 18 C -0.077 4.077 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.021 4.021 22 H 0.054 0.946 23 N -0.378 5.378 24 C -0.044 4.044 25 H 0.074 0.926 26 H 0.138 0.862 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.104 0.896 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.693 -7.807 2.712 8.692 hybrid contribution 0.595 1.154 -0.022 1.298 sum 3.288 -6.653 2.690 7.894 Atomic orbital electron populations 1.69905 1.06044 1.27034 1.49145 1.25028 0.94867 0.99483 0.94139 0.86519 0.80350 0.83393 0.77755 1.19471 1.20932 1.20737 1.20920 0.93786 0.88902 1.49708 0.92008 1.18563 0.97485 0.89582 0.82380 0.92970 1.20451 0.92390 0.92347 0.97227 1.20984 0.97428 0.96616 0.96940 1.21034 0.98371 1.00290 0.95479 1.20821 0.94430 1.02374 0.99428 1.20945 0.96844 0.98903 0.97961 1.21076 0.99649 0.98805 0.94838 1.62151 1.55243 1.04810 1.03741 1.22017 0.94897 0.93577 0.97179 1.21534 1.01305 0.97292 0.94883 1.21560 1.00791 0.95324 0.97016 1.21441 0.97609 0.92468 0.90595 0.94585 1.58661 1.65944 1.07297 1.05908 1.21626 0.99066 0.96232 0.87478 0.92605 0.86199 0.87591 0.87722 0.87528 0.86791 0.96165 0.91651 0.92547 0.91780 0.91897 0.93267 0.85620 0.84643 0.89643 0.95385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.42 12.62 55.43 0.70 -23.72 16 2 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 3 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.49 -12.85 6.53 -34.44 -0.22 -13.08 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.22 5.38 2.00 -70.01 -0.14 5.24 16 10 H 0.05 1.42 6.72 -51.93 -0.35 1.07 16 11 C -0.02 -0.51 3.53 -104.62 -0.37 -0.88 16 12 C -0.10 -2.05 9.08 -39.58 -0.36 -2.41 16 13 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 14 C -0.15 -2.59 10.05 -39.58 -0.40 -2.99 16 15 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 16 C -0.13 -2.62 9.67 -39.58 -0.38 -3.00 16 17 N -0.53 -11.26 4.04 -229.47 -0.93 -12.19 16 18 C 0.05 0.98 5.28 -3.83 -0.02 0.96 16 19 C -0.11 -1.74 6.09 -26.65 -0.16 -1.91 16 20 C -0.11 -1.68 5.58 -26.61 -0.15 -1.83 16 21 C 0.09 1.52 3.41 -67.63 -0.23 1.29 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 N -0.85 -12.59 9.25 -4.60 -0.04 -12.64 16 24 C 0.08 1.76 4.73 -3.83 -0.02 1.75 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.12 2.45 7.94 -52.49 -0.42 2.03 16 27 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 28 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.11 2.44 7.99 -52.49 -0.42 2.02 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.25 6.87 -51.93 -0.36 0.89 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.33 4.05 9.04 -39.29 -0.36 3.70 16 38 H 0.34 4.88 9.00 -39.30 -0.35 4.53 16 39 H 0.09 1.96 6.66 -51.93 -0.35 1.62 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -27.21 319.77 -10.19 -37.40 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -6.37 Total: 11.33 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -3.35 Total: -20.62 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.27 Total: -48.54 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.21 -10.19 -37.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.894 kcal (2) G-P(sol) polarization free energy of solvation -27.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds