Wall clock time and date at job start Mon Mar 30 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00376 * 2 1 4 4 H 1.48494 * 109.47579 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46832 * 300.00227 * 3 2 1 6 6 H 1.48503 * 109.46835 * 59.99472 * 3 2 1 7 7 C 1.37879 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00435 * 173.36089 * 7 2 1 9 9 C 1.50703 * 119.99859 * 353.63293 * 7 2 1 10 10 H 1.08996 * 109.47380 * 0.89215 * 9 7 2 11 11 C 1.50701 * 109.46960 * 120.89731 * 9 7 2 12 12 C 1.38232 * 120.00293 * 72.88544 * 11 9 7 13 13 C 1.38240 * 119.99539 * 179.76626 * 12 11 9 14 14 C 1.38236 * 120.00290 * 0.51021 * 13 12 11 15 15 C 1.38233 * 119.99589 * 359.74594 * 14 13 12 16 16 C 1.38234 * 119.99449 * 253.16588 * 11 9 7 17 17 N 1.46902 * 109.47262 * 240.89019 * 9 7 2 18 18 C 1.46846 * 111.00153 * 176.91269 * 17 9 7 19 19 C 1.53036 * 109.52239 * 174.16620 * 18 17 9 20 20 C 1.53112 * 109.28296 * 59.17880 * 19 18 17 21 21 C 1.53119 * 109.15882 * 302.34411 * 20 19 18 22 22 H 1.08998 * 109.50748 * 297.71219 * 21 20 19 23 23 N 1.46905 * 109.50536 * 177.59405 * 21 20 19 24 24 C 1.46850 * 110.99796 * 52.70119 * 17 9 7 25 25 H 0.97004 * 120.00062 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99933 * 0.02562 * 12 11 9 27 27 H 1.08004 * 119.99582 * 180.22968 * 13 12 11 28 28 H 1.07997 * 119.99664 * 179.72307 * 14 13 12 29 29 H 1.08011 * 119.99506 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.00371 * 359.97438 * 16 11 9 31 31 H 1.09003 * 109.45921 * 294.17821 * 18 17 9 32 32 H 1.09002 * 109.46056 * 54.15540 * 18 17 9 33 33 H 1.09001 * 109.49874 * 179.12139 * 19 18 17 34 34 H 1.08997 * 109.49906 * 299.19116 * 19 18 17 35 35 H 1.09004 * 109.52612 * 62.24744 * 20 19 18 36 36 H 1.09003 * 109.52596 * 182.44154 * 20 19 18 37 37 H 1.00901 * 110.99665 * 59.99586 * 23 21 20 38 38 H 1.00893 * 111.00103 * 183.95717 * 23 21 20 39 39 H 1.08994 * 109.46294 * 305.85866 * 24 17 9 40 40 H 1.09001 * 109.45928 * 65.82041 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0790 -1.1973 -0.1076 9 6 1.2579 -2.4951 0.1459 10 1 0.1893 -2.2943 0.2217 11 6 1.5219 -3.3628 -1.0577 12 6 2.7538 -3.9695 -1.2155 13 6 2.9942 -4.7694 -2.3171 14 6 2.0062 -4.9540 -3.2661 15 6 0.7760 -4.3429 -3.1109 16 6 0.5338 -3.5473 -2.0067 17 7 1.7132 -3.1882 1.3584 18 6 0.9548 -4.4272 1.5726 19 6 1.5501 -5.1932 2.7562 20 6 1.4915 -4.3140 4.0084 21 6 2.2478 -3.0095 3.7423 22 1 3.2959 -3.2309 3.5411 23 7 2.1475 -2.1356 4.9190 24 6 1.6322 -2.3067 2.5302 25 1 -0.4850 0.8401 -0.0004 26 1 3.5271 -3.8220 -0.4762 27 1 3.9555 -5.2464 -2.4386 28 1 2.1956 -5.5753 -4.1289 29 1 0.0041 -4.4868 -3.8526 30 1 -0.4274 -3.0700 -1.8854 31 1 -0.0864 -4.1837 1.7843 32 1 1.0082 -5.0452 0.6763 33 1 0.9773 -6.1051 2.9246 34 1 2.5870 -5.4497 2.5391 35 1 0.4519 -4.0900 4.2479 36 1 1.9539 -4.8391 4.8442 37 1 2.5446 -2.5792 5.7336 38 1 2.5837 -1.2428 4.7445 39 1 2.1774 -1.3846 2.3293 40 1 0.5879 -2.0731 2.7373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:53 Heat of formation + Delta-G solvation = 3.212511 kcal Electronic energy + Delta-G solvation = -20172.892438 eV Core-core repulsion = 17371.814255 eV Total energy + Delta-G solvation = -2801.078183 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.51571 -39.23439 -36.20639 -34.56371 -33.15111 -31.70566 -31.50572 -29.03523 -28.37508 -25.69757 -23.64462 -23.12287 -23.09053 -21.29041 -20.39463 -18.47387 -17.49917 -17.09119 -16.48897 -16.27706 -15.97275 -15.80149 -15.52798 -15.22318 -14.80829 -14.38815 -14.05031 -13.91199 -13.64674 -13.46355 -13.29857 -13.07495 -12.84158 -12.64006 -12.50771 -12.16826 -11.87980 -11.74161 -11.53276 -11.42673 -11.23705 -10.97355 -10.66595 -9.59611 -9.57215 -9.31220 -8.91435 -8.18206 -6.27987 0.71961 0.77410 1.35351 1.38173 1.49453 2.36416 2.93850 3.24071 3.33736 3.78957 4.00385 4.08977 4.22303 4.26049 4.31827 4.40735 4.43686 4.55233 4.59456 4.72774 4.85678 4.91779 4.93187 4.99275 5.10081 5.14403 5.16189 5.26289 5.30406 5.40556 5.48066 5.50951 5.66601 5.79100 5.83753 6.03816 6.11567 6.24953 6.39611 6.46832 6.68983 6.80879 6.92619 7.37600 8.86455 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.010402 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.315542 B = 2691.189720 C = 4378.454202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.022 3.978 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.498 4.498 8 H 0.052 0.948 9 C 0.232 3.768 10 H 0.005 0.995 11 C -0.049 4.049 12 C -0.113 4.113 13 C -0.125 4.125 14 C -0.141 4.141 15 C -0.124 4.124 16 C -0.150 4.150 17 N -0.527 5.527 18 C 0.053 3.947 19 C -0.103 4.103 20 C -0.104 4.104 21 C 0.100 3.900 22 H 0.041 0.959 23 N -0.852 5.852 24 C 0.093 3.907 25 H 0.263 0.737 26 H 0.113 0.887 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.135 0.865 30 H 0.091 0.909 31 H -0.002 1.002 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.352 0.648 38 H 0.344 0.656 39 H 0.058 0.942 40 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -9.861 2.597 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.126 3.874 10 H 0.023 0.977 11 C -0.050 4.050 12 C -0.131 4.131 13 C -0.143 4.143 14 C -0.159 4.159 15 C -0.142 4.142 16 C -0.169 4.169 17 N -0.252 5.252 18 C -0.075 4.075 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.011 4.011 22 H 0.059 0.941 23 N -0.384 5.384 24 C -0.036 4.036 25 H 0.072 0.928 26 H 0.131 0.869 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.153 0.847 30 H 0.109 0.891 31 H 0.016 0.984 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.166 0.834 38 H 0.156 0.844 39 H 0.076 0.924 40 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges 4.721 -9.925 2.436 11.257 hybrid contribution -0.046 1.718 0.014 1.719 sum 4.674 -8.207 2.450 9.758 Atomic orbital electron populations 1.70048 1.07433 1.27471 1.50952 1.25718 0.95487 1.02487 0.94122 0.85613 0.79385 0.79720 0.77687 1.18766 1.20830 1.20297 1.21065 0.93262 0.90262 1.49122 0.92991 1.18301 0.94363 0.90100 0.84682 0.97732 1.20309 0.93964 0.93874 0.96839 1.20966 0.96275 0.97603 0.98249 1.21409 1.00065 0.98775 0.94064 1.21297 0.93140 1.01331 1.00105 1.21255 0.98406 0.97498 0.97078 1.21075 0.98818 1.00553 0.96481 1.62148 1.54961 1.05189 1.02938 1.22075 0.93777 0.92741 0.98922 1.21510 1.01907 0.97666 0.93038 1.21538 1.00030 0.94578 0.98063 1.21265 0.97490 0.92992 0.89403 0.94075 1.58585 1.66511 1.07360 1.05901 1.21533 0.96616 0.96011 0.89458 0.92819 0.86917 0.84030 0.83482 0.84721 0.89105 0.98356 0.91923 0.89794 0.90842 0.93245 0.89830 0.83372 0.84360 0.92394 0.99205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 12.62 21.45 0.27 -53.75 16 2 C 0.02 1.22 5.45 84.66 0.46 1.68 16 3 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.50 -27.25 6.53 25.60 0.17 -27.08 16 8 H 0.05 2.88 7.82 -2.91 -0.02 2.85 16 9 C 0.23 11.80 2.00 43.42 0.09 11.88 16 10 H 0.00 0.28 6.72 -2.39 -0.02 0.27 16 11 C -0.05 -2.23 3.53 -19.87 -0.07 -2.30 16 12 C -0.11 -4.49 9.08 22.27 0.20 -4.29 16 13 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 14 C -0.14 -4.25 10.05 22.27 0.22 -4.02 16 15 C -0.12 -4.28 10.05 22.27 0.22 -4.06 16 16 C -0.15 -6.51 9.67 22.27 0.22 -6.29 16 17 N -0.53 -23.26 4.04 -879.92 -3.56 -26.81 16 18 C 0.05 2.06 5.28 86.33 0.46 2.52 16 19 C -0.10 -3.03 6.09 30.64 0.19 -2.84 16 20 C -0.10 -3.02 5.58 30.67 0.17 -2.85 16 21 C 0.10 3.32 3.41 44.97 0.15 3.47 16 22 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 23 N -0.85 -24.53 9.25 -168.45 -1.56 -26.09 16 24 C 0.09 4.07 4.73 86.33 0.41 4.48 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.11 4.58 7.94 -2.91 -0.02 4.55 16 27 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 28 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 29 H 0.13 3.81 8.06 -2.90 -0.02 3.78 16 30 H 0.09 4.22 7.99 -2.91 -0.02 4.20 16 31 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.06 2.44 6.87 -2.39 -0.02 2.42 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.35 7.80 9.04 -89.69 -0.81 6.99 16 38 H 0.34 9.71 9.00 -89.70 -0.81 8.91 16 39 H 0.06 2.82 6.66 -2.39 -0.02 2.80 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 Total: -1.00 -63.32 319.77 -0.30 -63.62 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.59 Total: 30.73 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 3.11 Total: -33.51 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -4.84 Total: -106.65 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -63.32 -0.30 -63.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.832 kcal (2) G-P(sol) polarization free energy of solvation -63.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds