Wall clock time and date at job start Mon Mar 30 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47199 * 2 1 4 4 C 1.53002 * 109.47449 * 185.80683 * 3 2 1 5 5 C 1.52999 * 109.46801 * 64.95755 * 4 3 2 6 6 C 1.50711 * 109.46871 * 65.80635 * 3 2 1 7 7 O 1.20760 * 119.99583 * 30.00180 * 6 3 2 8 8 C 1.50695 * 120.00237 * 210.00017 * 6 3 2 9 9 H 1.09003 * 109.46936 * 326.19340 * 8 6 3 10 10 C 1.50691 * 109.47059 * 86.19132 * 8 6 3 11 11 H 1.07999 * 119.99960 * 62.88471 * 10 8 6 12 12 C 1.37882 * 120.00470 * 242.88226 * 10 8 6 13 13 N 1.31513 * 120.00332 * 179.21274 * 12 10 8 14 14 Si 1.86798 * 119.99631 * 359.20922 * 12 10 8 15 15 H 1.48507 * 109.46989 * 84.63582 * 14 12 10 16 16 H 1.48495 * 109.47542 * 204.63289 * 14 12 10 17 17 H 1.48505 * 109.47402 * 324.63909 * 14 12 10 18 18 C 1.50701 * 109.46897 * 206.19548 * 8 6 3 19 19 C 1.38235 * 119.99846 * 292.55974 * 18 8 6 20 20 C 1.38234 * 120.00000 * 179.81683 * 19 18 8 21 21 C 1.38240 * 119.99635 * 0.39471 * 20 19 18 22 22 C 1.38232 * 120.00298 * 359.86092 * 21 20 19 23 23 C 1.38236 * 120.00079 * 359.95163 * 22 21 20 24 24 H 1.09001 * 109.46548 * 184.06210 * 1 2 3 25 25 H 1.08997 * 109.46946 * 304.05975 * 1 2 3 26 26 H 1.09000 * 109.46898 * 64.06300 * 1 2 3 27 27 H 1.09006 * 109.46955 * 240.00302 * 2 1 3 28 28 H 1.08997 * 109.47326 * 120.00720 * 2 1 3 29 29 H 1.09004 * 109.47488 * 305.81282 * 3 2 1 30 30 H 1.08997 * 109.47121 * 184.95656 * 4 3 2 31 31 H 1.09001 * 109.46721 * 304.95675 * 4 3 2 32 32 H 1.09000 * 109.46659 * 173.80638 * 5 4 3 33 33 H 1.09003 * 109.46836 * 293.79897 * 5 4 3 34 34 H 1.08992 * 109.47437 * 53.79927 * 5 4 3 35 35 H 0.97000 * 119.99511 * 180.02562 * 13 12 10 36 36 H 1.08000 * 120.00174 * 359.97438 * 19 18 8 37 37 H 1.07991 * 120.00308 * 180.23267 * 20 19 18 38 38 H 1.07999 * 119.99984 * 179.83596 * 21 20 19 39 39 H 1.07998 * 120.00011 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.00244 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5631 1.4450 -0.1459 5 6 3.9450 0.8797 -1.5154 6 6 1.6585 2.1102 1.2961 7 8 1.5540 1.4547 2.3050 8 6 1.4072 3.5956 1.3332 9 1 2.0667 4.0934 0.6222 10 6 -0.0278 3.8716 0.9655 11 1 -0.8265 3.4959 1.5878 12 6 -0.3212 4.6039 -0.1653 13 7 -1.5739 4.8317 -0.4946 14 14 1.0606 5.2727 -1.2295 15 1 1.5004 4.2249 -2.1857 16 1 0.5768 6.4578 -1.9821 17 1 2.2035 5.6667 -0.3670 18 6 1.6796 4.1166 2.7208 19 6 0.8607 3.7463 3.7711 20 6 1.1127 4.2212 5.0446 21 6 2.1788 5.0729 5.2663 22 6 2.9945 5.4474 4.2150 23 6 2.7448 4.9694 2.9421 24 1 -0.3632 -1.0251 0.0728 25 1 -0.3633 0.5755 0.8514 26 1 -0.3633 0.4495 -0.9242 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.5942 1.9855 -0.8334 30 1 3.9348 2.4658 -0.0577 31 1 4.0041 0.8287 0.6375 32 1 5.0199 0.9827 -1.6639 33 1 3.6711 -0.1743 -1.5626 34 1 3.4163 1.4277 -2.2951 35 1 -1.7802 5.3466 -1.2904 36 1 0.0256 3.0840 3.5973 37 1 0.4753 3.9290 5.8659 38 1 2.3742 5.4460 6.2607 39 1 3.8271 6.1131 4.3881 40 1 3.3823 5.2616 2.1209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055026381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:40 Heat of formation + Delta-G solvation = -41.597481 kcal Electronic energy + Delta-G solvation = -20097.693168 eV Core-core repulsion = 17262.379127 eV Total energy + Delta-G solvation = -2835.314041 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.51128 -38.01957 -35.27574 -33.62824 -31.62046 -31.29510 -30.16925 -28.32742 -26.66854 -23.66841 -22.40099 -21.90559 -21.72049 -19.95432 -18.27074 -17.14402 -16.12399 -15.76754 -14.81932 -14.60875 -14.34084 -14.07968 -14.00527 -13.40226 -13.24873 -12.93796 -12.64766 -12.57764 -12.17305 -11.99513 -11.84788 -11.71434 -11.60827 -11.14438 -11.10600 -11.08777 -10.50355 -10.47567 -10.24966 -10.14277 -10.07066 -9.90936 -9.43266 -8.96943 -8.52469 -8.16496 -7.78558 -6.31360 -4.33569 2.10964 2.17501 2.99457 3.12753 3.19368 3.22164 4.18980 4.50172 4.89559 5.04275 5.10827 5.24722 5.47697 5.52262 5.56635 5.64959 5.67254 5.74281 5.80921 5.97587 6.04478 6.10681 6.13484 6.18754 6.22868 6.29990 6.36316 6.38974 6.44758 6.49975 6.59065 6.72490 6.79210 6.84453 6.88083 7.13740 7.22919 7.30013 7.57228 7.76847 8.24300 8.53298 8.75114 9.26072 10.79908 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.009398 C = 0.007624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.141219 B = 2978.611646 C = 3671.788982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.140 4.140 4 C -0.112 4.112 5 C -0.150 4.150 6 C 0.380 3.620 7 O -0.477 6.477 8 C -0.002 4.002 9 H 0.066 0.934 10 C -0.500 4.500 11 H 0.084 0.916 12 C 0.082 3.918 13 N -0.881 5.881 14 Si 0.865 3.135 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.261 1.261 18 C -0.035 4.035 19 C -0.077 4.077 20 C -0.130 4.130 21 C -0.143 4.143 22 C -0.130 4.130 23 C -0.135 4.135 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.269 0.731 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.092 -3.828 0.984 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.159 4.159 4 C -0.150 4.150 5 C -0.207 4.207 6 C 0.257 3.743 7 O -0.352 6.352 8 C -0.021 4.021 9 H 0.084 0.916 10 C -0.537 4.537 11 H 0.102 0.898 12 C -0.123 4.123 13 N -0.517 5.517 14 Si 0.692 3.308 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.186 1.186 18 C -0.035 4.035 19 C -0.095 4.095 20 C -0.148 4.148 21 C -0.161 4.161 22 C -0.148 4.148 23 C -0.153 4.153 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.886 -4.081 1.365 9.873 hybrid contribution 0.487 0.650 -0.800 1.140 sum 9.372 -3.430 0.565 9.996 Atomic orbital electron populations 1.21763 0.95405 1.00775 1.02945 1.21423 0.96455 0.95011 1.01592 1.21832 0.96421 0.97803 0.99867 1.21389 0.94056 1.01544 0.97962 1.21807 1.00723 1.01198 0.97000 1.25012 0.68932 0.92414 0.87933 1.90237 1.40283 1.67702 1.36969 1.18928 1.00032 0.91186 0.91998 0.91588 1.20535 0.87994 1.34908 1.10220 0.89844 1.25068 0.95478 0.94947 0.96765 1.69851 1.17492 1.38665 1.25677 0.87013 0.83068 0.79715 0.80990 1.19235 1.20950 1.18553 1.20117 0.92551 0.94886 0.95988 1.20963 0.98657 0.98187 0.91676 1.21067 0.97990 0.98724 0.97041 1.20883 0.96858 1.00181 0.98197 1.20902 0.99780 1.00901 0.93214 1.21020 0.98220 0.99490 0.96557 0.93563 0.91768 0.92674 0.92106 0.91620 0.88689 0.91779 0.91710 0.92895 0.92446 0.92509 0.92053 0.86171 0.87098 0.87319 0.87228 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.78 37.16 0.36 -2.28 16 2 C -0.11 -1.76 5.00 -26.73 -0.13 -1.89 16 3 C -0.14 -2.52 2.12 -91.77 -0.19 -2.71 16 4 C -0.11 -1.69 5.39 -26.73 -0.14 -1.83 16 5 C -0.15 -1.87 9.52 37.16 0.35 -1.52 16 6 C 0.38 8.06 4.37 -29.03 -0.13 7.93 16 7 O -0.48 -10.81 14.53 6.00 0.09 -10.72 16 8 C 0.00 -0.04 2.18 -94.08 -0.20 -0.25 16 9 H 0.07 1.46 4.29 -51.93 -0.22 1.24 16 10 C -0.50 -13.07 8.33 -34.44 -0.29 -13.36 16 11 H 0.08 2.42 7.50 -52.49 -0.39 2.03 16 12 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 13 N -0.88 -25.04 13.96 55.43 0.77 -24.27 16 14 Si 0.87 19.59 27.18 -169.99 -4.62 14.97 16 15 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.26 -5.63 6.46 56.52 0.37 -5.27 16 18 C -0.03 -0.77 4.57 -104.62 -0.48 -1.25 16 19 C -0.08 -1.65 8.03 -39.58 -0.32 -1.97 16 20 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 21 C -0.14 -2.43 10.05 -39.58 -0.40 -2.82 16 22 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 23 C -0.13 -2.65 9.67 -39.58 -0.38 -3.03 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.30 7.03 -51.93 -0.36 0.94 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 28 H 0.07 1.10 7.64 -51.93 -0.40 0.70 16 29 H 0.09 1.81 8.12 -51.93 -0.42 1.39 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.66 6.75 -51.93 -0.35 0.31 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.12 2.72 7.26 -52.49 -0.38 2.34 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.11 1.99 7.96 -52.49 -0.42 1.57 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -28.44 325.24 -7.96 -36.40 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.26 Total: 7.08 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -2.84 Total: -28.36 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.77 Total: -24.27 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.62 Total: 14.97 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.44 -7.96 -36.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055026381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.197 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds