Wall clock time and date at job start Mon Mar 30 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47199 * 2 1 4 4 C 1.53002 * 109.47449 * 185.80683 * 3 2 1 5 5 C 1.52999 * 109.46801 * 64.95755 * 4 3 2 6 6 C 1.50711 * 109.46871 * 65.80635 * 3 2 1 7 7 O 1.20760 * 119.99583 * 30.00180 * 6 3 2 8 8 C 1.50695 * 120.00237 * 210.00017 * 6 3 2 9 9 H 1.09003 * 109.46936 * 326.19340 * 8 6 3 10 10 C 1.50691 * 109.47059 * 86.19132 * 8 6 3 11 11 H 1.07999 * 119.99960 * 62.88471 * 10 8 6 12 12 C 1.37882 * 120.00470 * 242.88226 * 10 8 6 13 13 N 1.31513 * 120.00332 * 179.21274 * 12 10 8 14 14 Si 1.86798 * 119.99631 * 359.20922 * 12 10 8 15 15 H 1.48507 * 109.46989 * 84.63582 * 14 12 10 16 16 H 1.48495 * 109.47542 * 204.63289 * 14 12 10 17 17 H 1.48505 * 109.47402 * 324.63909 * 14 12 10 18 18 C 1.50701 * 109.46897 * 206.19548 * 8 6 3 19 19 C 1.38235 * 119.99846 * 292.55974 * 18 8 6 20 20 C 1.38234 * 120.00000 * 179.81683 * 19 18 8 21 21 C 1.38240 * 119.99635 * 0.39471 * 20 19 18 22 22 C 1.38232 * 120.00298 * 359.86092 * 21 20 19 23 23 C 1.38236 * 120.00079 * 359.95163 * 22 21 20 24 24 H 1.09001 * 109.46548 * 184.06210 * 1 2 3 25 25 H 1.08997 * 109.46946 * 304.05975 * 1 2 3 26 26 H 1.09000 * 109.46898 * 64.06300 * 1 2 3 27 27 H 1.09006 * 109.46955 * 240.00302 * 2 1 3 28 28 H 1.08997 * 109.47326 * 120.00720 * 2 1 3 29 29 H 1.09004 * 109.47488 * 305.81282 * 3 2 1 30 30 H 1.08997 * 109.47121 * 184.95656 * 4 3 2 31 31 H 1.09001 * 109.46721 * 304.95675 * 4 3 2 32 32 H 1.09000 * 109.46659 * 173.80638 * 5 4 3 33 33 H 1.09003 * 109.46836 * 293.79897 * 5 4 3 34 34 H 1.08992 * 109.47437 * 53.79927 * 5 4 3 35 35 H 0.97000 * 119.99511 * 180.02562 * 13 12 10 36 36 H 1.08000 * 120.00174 * 359.97438 * 19 18 8 37 37 H 1.07991 * 120.00308 * 180.23267 * 20 19 18 38 38 H 1.07999 * 119.99984 * 179.83596 * 21 20 19 39 39 H 1.07998 * 120.00011 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.00244 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5631 1.4450 -0.1459 5 6 3.9450 0.8797 -1.5154 6 6 1.6585 2.1102 1.2961 7 8 1.5540 1.4547 2.3050 8 6 1.4072 3.5956 1.3332 9 1 2.0667 4.0934 0.6222 10 6 -0.0278 3.8716 0.9655 11 1 -0.8265 3.4959 1.5878 12 6 -0.3212 4.6039 -0.1653 13 7 -1.5739 4.8317 -0.4946 14 14 1.0606 5.2727 -1.2295 15 1 1.5004 4.2249 -2.1857 16 1 0.5768 6.4578 -1.9821 17 1 2.2035 5.6667 -0.3670 18 6 1.6796 4.1166 2.7208 19 6 0.8607 3.7463 3.7711 20 6 1.1127 4.2212 5.0446 21 6 2.1788 5.0729 5.2663 22 6 2.9945 5.4474 4.2150 23 6 2.7448 4.9694 2.9421 24 1 -0.3632 -1.0251 0.0728 25 1 -0.3633 0.5755 0.8514 26 1 -0.3633 0.4495 -0.9242 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.5942 1.9855 -0.8334 30 1 3.9348 2.4658 -0.0577 31 1 4.0041 0.8287 0.6375 32 1 5.0199 0.9827 -1.6639 33 1 3.6711 -0.1743 -1.5626 34 1 3.4163 1.4277 -2.2951 35 1 -1.7802 5.3466 -1.2904 36 1 0.0256 3.0840 3.5973 37 1 0.4753 3.9290 5.8659 38 1 2.3742 5.4460 6.2607 39 1 3.8271 6.1131 4.3881 40 1 3.3823 5.2616 2.1209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055026381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:40 Heat of formation + Delta-G solvation = -55.667407 kcal Electronic energy + Delta-G solvation = -20098.303285 eV Core-core repulsion = 17262.379127 eV Total energy + Delta-G solvation = -2835.924159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.13764 -39.52062 -36.68609 -35.51002 -33.41749 -32.58621 -31.65303 -29.92214 -28.13056 -25.51348 -23.74162 -23.40201 -23.08073 -21.44942 -19.88639 -19.12883 -17.63061 -17.37744 -16.42513 -16.25497 -15.75475 -15.50849 -15.42895 -14.88003 -14.80125 -14.65597 -14.20501 -14.14236 -13.76712 -13.36669 -13.32416 -13.00591 -12.89015 -12.86079 -12.60952 -12.44667 -12.02925 -11.93085 -11.80127 -11.65355 -11.57543 -11.37126 -11.31115 -10.89454 -10.23410 -9.66663 -9.34054 -8.36896 -6.44769 0.61291 0.67704 1.28342 1.33673 1.37578 1.44028 2.28052 2.90617 3.11596 3.39925 3.79282 3.99207 4.08238 4.20740 4.24379 4.34279 4.35159 4.39840 4.50411 4.52654 4.57188 4.72878 4.79149 4.83506 4.85302 4.90203 5.02297 5.05099 5.16794 5.21154 5.23644 5.30871 5.32405 5.40996 5.41827 5.46496 5.67859 5.72183 5.92915 6.18819 6.30267 6.57614 6.88897 7.18518 8.78494 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.009398 C = 0.007624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.141219 B = 2978.611646 C = 3671.788982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.140 4.140 4 C -0.110 4.110 5 C -0.146 4.146 6 C 0.378 3.622 7 O -0.498 6.498 8 C -0.004 4.004 9 H 0.076 0.924 10 C -0.499 4.499 11 H 0.030 0.970 12 C 0.029 3.971 13 N -0.933 5.933 14 Si 0.923 3.077 15 H -0.242 1.242 16 H -0.285 1.285 17 H -0.240 1.240 18 C -0.068 4.068 19 C -0.108 4.108 20 C -0.135 4.135 21 C -0.135 4.135 22 C -0.122 4.122 23 C -0.147 4.147 24 H 0.070 0.930 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.271 0.729 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.729 -3.443 0.750 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.139 4.139 3 C -0.159 4.159 4 C -0.148 4.148 5 C -0.203 4.203 6 C 0.257 3.743 7 O -0.375 6.375 8 C -0.023 4.023 9 H 0.094 0.906 10 C -0.536 4.536 11 H 0.048 0.952 12 C -0.171 4.171 13 N -0.571 5.571 14 Si 0.745 3.255 15 H -0.166 1.166 16 H -0.211 1.211 17 H -0.164 1.164 18 C -0.068 4.068 19 C -0.127 4.127 20 C -0.153 4.153 21 C -0.152 4.152 22 C -0.140 4.140 23 C -0.165 4.165 24 H 0.089 0.911 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.169 0.831 39 H 0.169 0.831 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.538 -3.712 1.142 13.125 hybrid contribution -0.717 0.510 -0.552 1.038 sum 11.821 -3.202 0.590 12.261 Atomic orbital electron populations 1.21745 0.96784 1.01483 1.00741 1.21436 0.95137 0.94278 1.03077 1.21872 0.98933 0.98151 0.96936 1.21434 0.91193 1.02118 1.00020 1.21797 1.02144 1.01586 0.94805 1.25227 0.68142 0.91792 0.89146 1.90217 1.41227 1.67793 1.38233 1.18902 0.97601 0.92671 0.93119 0.90626 1.20483 0.88965 1.34648 1.09514 0.95158 1.25918 0.98041 0.95083 0.98066 1.70007 1.20079 1.40317 1.26722 0.86078 0.80255 0.79490 0.79629 1.16580 1.21113 1.16384 1.20173 0.94421 0.96744 0.95466 1.20882 0.98614 0.99488 0.93701 1.21358 0.99049 0.98720 0.96163 1.21370 0.95243 0.98432 1.00201 1.21391 1.00401 1.00175 0.92012 1.21289 0.97691 0.98985 0.98518 0.91097 0.95957 0.93149 0.88579 0.91922 0.89770 0.91679 0.91289 0.90700 0.91316 0.92769 0.91955 0.89651 0.85015 0.83136 0.83082 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.78 71.98 0.70 -4.67 16 2 C -0.10 -3.25 5.00 30.59 0.15 -3.09 16 3 C -0.14 -4.94 2.12 -11.54 -0.02 -4.97 16 4 C -0.11 -3.05 5.39 30.59 0.16 -2.88 16 5 C -0.15 -3.10 9.52 71.98 0.69 -2.42 16 6 C 0.38 16.52 4.37 29.10 0.13 16.65 16 7 O -0.50 -23.66 14.53 -1.45 -0.02 -23.68 16 8 C 0.00 -0.17 2.18 -13.04 -0.03 -0.19 16 9 H 0.08 3.30 4.29 -2.39 -0.01 3.29 16 10 C -0.50 -27.82 8.33 25.60 0.21 -27.60 16 11 H 0.03 1.95 7.50 -2.91 -0.02 1.93 16 12 C 0.03 1.58 5.47 84.66 0.46 2.05 16 13 N -0.93 -55.85 13.96 21.45 0.30 -55.55 16 14 Si 0.92 40.12 27.18 68.60 1.86 41.98 16 15 H -0.24 -9.51 7.11 99.48 0.71 -8.80 16 16 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.24 -9.55 6.46 99.48 0.64 -8.91 16 18 C -0.07 -3.04 4.57 -19.86 -0.09 -3.13 16 19 C -0.11 -4.91 8.03 22.27 0.18 -4.73 16 20 C -0.13 -4.93 10.05 22.27 0.22 -4.71 16 21 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 22 C -0.12 -3.79 10.05 22.27 0.22 -3.56 16 23 C -0.15 -5.51 9.67 22.27 0.22 -5.30 16 24 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.02 0.95 7.03 -2.39 -0.02 0.93 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.10 2.40 6.44 -2.38 -0.02 2.38 16 28 H 0.06 2.04 7.64 -2.39 -0.02 2.02 16 29 H 0.08 3.16 8.12 -2.38 -0.02 3.14 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.30 6.75 -2.39 -0.02 1.28 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.09 4.32 7.26 -2.91 -0.02 4.29 16 37 H 0.13 4.10 8.06 -2.92 -0.02 4.08 16 38 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.13 4.22 7.96 -2.91 -0.02 4.19 16 Total: -1.00 -67.07 325.24 6.51 -60.56 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.94 Total: 29.15 kcal Atomic # 6 Polarization: -55.90 SS G_CDS: 3.43 Total: -52.46 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.30 Total: -55.55 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.02 Total: -23.68 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.86 Total: 41.98 kcal Total: -67.07 6.51 -60.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055026381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.894 kcal (2) G-P(sol) polarization free energy of solvation -67.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds