Wall clock time and date at job start Mon Mar 30 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47329 * 2 1 4 4 C 1.52999 * 109.47074 * 303.12045 * 3 2 1 5 5 C 1.53001 * 109.47092 * 295.20077 * 4 3 2 6 6 C 1.50700 * 109.46566 * 63.11850 * 3 2 1 7 7 O 1.20764 * 120.00223 * 269.99396 * 6 3 2 8 8 C 1.50699 * 119.99747 * 90.00161 * 6 3 2 9 9 H 1.09001 * 109.47723 * 34.99655 * 8 6 3 10 10 C 1.50702 * 109.47314 * 274.99139 * 8 6 3 11 11 H 1.08004 * 119.99720 * 119.60309 * 10 8 6 12 12 C 1.37876 * 120.00336 * 299.61157 * 10 8 6 13 13 N 1.31517 * 119.99772 * 1.55806 * 12 10 8 14 14 Si 1.86798 * 120.00217 * 181.55558 * 12 10 8 15 15 H 1.48501 * 109.47073 * 89.99690 * 14 12 10 16 16 H 1.48501 * 109.47081 * 210.00185 * 14 12 10 17 17 H 1.48498 * 109.47006 * 329.99809 * 14 12 10 18 18 C 1.50698 * 109.47113 * 154.99820 * 8 6 3 19 19 C 1.38237 * 120.00461 * 142.58145 * 18 8 6 20 20 C 1.38237 * 120.00127 * 179.97438 * 19 18 8 21 21 C 1.38232 * 120.00048 * 359.95564 * 20 19 18 22 22 C 1.38229 * 119.99979 * 0.02562 * 21 20 19 23 23 C 1.38233 * 120.00375 * 0.05817 * 22 21 20 24 24 H 1.08997 * 109.47108 * 66.00031 * 1 2 3 25 25 H 1.09002 * 109.47222 * 186.00223 * 1 2 3 26 26 H 1.08998 * 109.46510 * 306.00563 * 1 2 3 27 27 H 1.09005 * 109.46845 * 240.00441 * 2 1 3 28 28 H 1.08997 * 109.46953 * 120.00638 * 2 1 3 29 29 H 1.09004 * 109.46918 * 183.11462 * 3 2 1 30 30 H 1.09001 * 109.47345 * 55.20604 * 4 3 2 31 31 H 1.09004 * 109.46854 * 175.20473 * 4 3 2 32 32 H 1.08998 * 109.47152 * 306.05763 * 5 4 3 33 33 H 1.08999 * 109.46945 * 66.05495 * 5 4 3 34 34 H 1.08995 * 109.46869 * 186.05226 * 5 4 3 35 35 H 0.96998 * 119.99600 * 180.02562 * 13 12 10 36 36 H 1.08000 * 119.99922 * 359.97438 * 19 18 8 37 37 H 1.07997 * 119.99706 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99685 * 179.71863 * 21 20 19 39 39 H 1.08004 * 119.99711 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00449 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4670 2.1861 -1.2081 5 6 2.0081 1.5608 -2.4955 6 6 1.6018 2.1301 1.2673 7 8 0.5468 2.7167 1.3023 8 6 2.4802 2.0859 2.4910 9 1 3.5270 2.1117 2.1882 10 6 2.2103 0.8168 3.2576 11 1 3.0054 0.1040 3.4192 12 6 0.9482 0.5655 3.7526 13 7 -0.0275 1.4187 3.5294 14 14 0.6240 -0.9866 4.7400 15 1 0.8647 -0.7164 6.1802 16 1 -0.7853 -1.4122 4.5448 17 1 1.5350 -2.0653 4.2798 18 6 2.1814 3.2750 3.3672 19 6 2.1912 3.1399 4.7429 20 6 1.9176 4.2309 5.5465 21 6 1.6350 5.4572 4.9745 22 6 1.6255 5.5924 3.5989 23 6 1.8974 4.5011 2.7952 24 1 -0.3633 0.4180 -0.9388 25 1 -0.3634 -1.0220 0.1075 26 1 -0.3632 0.6041 0.8314 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.1287 1.4429 -0.0558 30 1 0.3795 2.1126 -1.1976 31 1 1.7608 3.2348 -1.1622 32 1 3.0972 1.5369 -2.4579 33 1 1.6256 0.5450 -2.5946 34 1 1.6869 2.1551 -3.3508 35 1 -0.9153 1.2421 3.8779 36 1 2.4127 2.1820 5.1899 37 1 1.9249 4.1252 6.6213 38 1 1.4167 6.3084 5.6024 39 1 1.4043 6.5504 3.1520 40 1 1.8896 4.6066 1.7203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055026383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:42 Heat of formation + Delta-G solvation = -30.618980 kcal Electronic energy + Delta-G solvation = -20531.507830 eV Core-core repulsion = 17696.669853 eV Total energy + Delta-G solvation = -2834.837977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.15342 -37.60791 -35.03913 -33.50837 -30.83587 -30.61810 -29.71617 -27.92651 -26.35913 -23.82344 -22.85126 -21.39803 -21.03076 -19.52539 -17.74664 -16.50738 -15.61006 -15.18423 -14.90808 -14.66648 -14.15267 -13.84304 -13.62700 -13.11148 -12.52228 -12.46386 -12.39292 -12.26682 -12.16988 -11.52188 -11.38896 -11.26856 -11.21310 -10.93729 -10.81497 -10.73750 -10.46857 -10.23287 -10.05842 -9.92680 -9.84445 -9.58632 -9.28395 -8.65603 -7.90553 -7.71473 -7.34649 -6.03597 -4.20537 2.53964 2.59317 3.22489 3.32294 3.32617 3.67641 4.34250 4.91740 5.12780 5.31116 5.37818 5.51483 5.80273 5.84126 5.88884 5.89613 5.93758 6.01723 6.07721 6.24432 6.27165 6.33243 6.40286 6.42655 6.56190 6.64207 6.68340 6.75931 6.82621 6.87178 7.03672 7.08783 7.15974 7.19460 7.31193 7.52480 7.63177 7.74973 7.85599 8.16064 8.29762 8.76737 9.26311 9.43709 10.93181 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.010345 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.959163 B = 2705.940931 C = 4031.122680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.101 4.101 3 C -0.132 4.132 4 C -0.113 4.113 5 C -0.149 4.149 6 C 0.374 3.626 7 O -0.434 6.434 8 C 0.031 3.969 9 H 0.052 0.948 10 C -0.530 4.530 11 H 0.064 0.936 12 C 0.075 3.925 13 N -0.829 5.829 14 Si 0.878 3.122 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.003 4.003 19 C -0.075 4.075 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.137 4.137 23 C -0.115 4.115 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.262 0.738 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 1.227 -4.849 6.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.139 4.139 3 C -0.152 4.152 4 C -0.151 4.151 5 C -0.206 4.206 6 C 0.247 3.753 7 O -0.305 6.305 8 C 0.012 3.988 9 H 0.070 0.930 10 C -0.568 4.568 11 H 0.083 0.917 12 C -0.133 4.133 13 N -0.462 5.462 14 Si 0.705 3.295 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.004 4.004 19 C -0.092 4.092 20 C -0.159 4.159 21 C -0.168 4.168 22 C -0.155 4.155 23 C -0.133 4.133 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.179 1.597 -4.809 5.982 hybrid contribution -0.445 -0.999 0.599 1.247 sum 2.734 0.598 -4.209 5.055 Atomic orbital electron populations 1.21883 0.96113 1.00868 1.02520 1.21296 0.96243 0.94602 1.01717 1.21768 1.00618 0.97134 0.95666 1.21452 1.01592 0.98633 0.93397 1.21792 1.00700 1.00769 0.97326 1.24455 0.87356 0.75621 0.87842 1.90272 1.21903 1.34940 1.83404 1.18361 0.94853 0.93748 0.91810 0.93000 1.20574 0.96109 1.04153 1.35928 0.91736 1.25037 0.96397 0.96116 0.95768 1.70156 1.01217 1.33674 1.41106 0.86804 0.77735 0.84056 0.80890 1.20478 1.21193 1.19712 1.19982 0.92998 0.93065 0.94347 1.21047 0.97178 0.97427 0.93590 1.20984 1.02696 0.93696 0.98559 1.20737 1.04262 0.97035 0.94729 1.20796 1.02960 0.97922 0.93823 1.20887 1.00789 0.93127 0.98523 0.93874 0.94274 0.89970 0.93152 0.90269 0.90617 0.91030 0.92793 0.93073 0.92737 0.93468 0.92735 0.85816 0.88081 0.88224 0.88153 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.14 37.16 0.34 -2.64 16 2 C -0.10 -1.82 5.38 -26.73 -0.14 -1.97 16 3 C -0.13 -2.42 2.45 -91.77 -0.22 -2.65 16 4 C -0.11 -1.86 4.63 -26.73 -0.12 -1.98 16 5 C -0.15 -1.96 9.51 37.16 0.35 -1.61 16 6 C 0.37 8.29 3.23 -29.03 -0.09 8.20 16 7 O -0.43 -10.83 12.08 6.00 0.07 -10.76 16 8 C 0.03 0.72 2.73 -94.08 -0.26 0.47 16 9 H 0.05 1.11 8.10 -51.93 -0.42 0.69 16 10 C -0.53 -12.89 6.58 -34.44 -0.23 -13.12 16 11 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 12 C 0.08 1.89 4.25 -17.82 -0.08 1.82 16 13 N -0.83 -22.19 10.10 55.43 0.56 -21.63 16 14 Si 0.88 19.94 29.54 -169.99 -5.02 14.92 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 C 0.00 -0.08 4.24 -104.62 -0.44 -0.52 16 19 C -0.07 -1.71 8.32 -39.58 -0.33 -2.04 16 20 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 21 C -0.15 -2.93 10.05 -39.59 -0.40 -3.33 16 22 C -0.14 -2.77 10.05 -39.59 -0.40 -3.17 16 23 C -0.12 -2.55 8.36 -39.58 -0.33 -2.88 16 24 H 0.04 0.75 6.62 -51.93 -0.34 0.40 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.89 6.39 -51.93 -0.33 1.56 16 27 H 0.05 0.77 6.85 -51.93 -0.36 0.42 16 28 H 0.08 1.57 7.40 -51.93 -0.38 1.18 16 29 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 30 H 0.07 1.28 6.11 -51.93 -0.32 0.96 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.70 6.94 -51.93 -0.36 0.34 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.12 2.92 6.52 -52.49 -0.34 2.58 16 37 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.10 2.19 6.92 -52.49 -0.36 1.82 16 LS Contribution 314.78 15.07 4.74 4.74 Total: -1.00 -27.16 314.78 -8.54 -35.69 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.14 Total: 5.78 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: -2.75 Total: -28.74 kcal Atomic # 7 Polarization: -22.19 SS G_CDS: 0.56 Total: -21.63 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.16 -8.54 -35.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055026383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.074 kcal (2) G-P(sol) polarization free energy of solvation -27.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds