Wall clock time and date at job start Mon Mar 30 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47329 * 2 1 4 4 C 1.52999 * 109.47074 * 303.12045 * 3 2 1 5 5 C 1.53001 * 109.47092 * 295.20077 * 4 3 2 6 6 C 1.50700 * 109.46566 * 63.11850 * 3 2 1 7 7 O 1.20764 * 120.00223 * 269.99396 * 6 3 2 8 8 C 1.50699 * 119.99747 * 90.00161 * 6 3 2 9 9 H 1.09001 * 109.47723 * 34.99655 * 8 6 3 10 10 C 1.50702 * 109.47314 * 274.99139 * 8 6 3 11 11 H 1.08004 * 119.99720 * 119.60309 * 10 8 6 12 12 C 1.37876 * 120.00336 * 299.61157 * 10 8 6 13 13 N 1.31517 * 119.99772 * 1.55806 * 12 10 8 14 14 Si 1.86798 * 120.00217 * 181.55558 * 12 10 8 15 15 H 1.48501 * 109.47073 * 89.99690 * 14 12 10 16 16 H 1.48501 * 109.47081 * 210.00185 * 14 12 10 17 17 H 1.48498 * 109.47006 * 329.99809 * 14 12 10 18 18 C 1.50698 * 109.47113 * 154.99820 * 8 6 3 19 19 C 1.38237 * 120.00461 * 142.58145 * 18 8 6 20 20 C 1.38237 * 120.00127 * 179.97438 * 19 18 8 21 21 C 1.38232 * 120.00048 * 359.95564 * 20 19 18 22 22 C 1.38229 * 119.99979 * 0.02562 * 21 20 19 23 23 C 1.38233 * 120.00375 * 0.05817 * 22 21 20 24 24 H 1.08997 * 109.47108 * 66.00031 * 1 2 3 25 25 H 1.09002 * 109.47222 * 186.00223 * 1 2 3 26 26 H 1.08998 * 109.46510 * 306.00563 * 1 2 3 27 27 H 1.09005 * 109.46845 * 240.00441 * 2 1 3 28 28 H 1.08997 * 109.46953 * 120.00638 * 2 1 3 29 29 H 1.09004 * 109.46918 * 183.11462 * 3 2 1 30 30 H 1.09001 * 109.47345 * 55.20604 * 4 3 2 31 31 H 1.09004 * 109.46854 * 175.20473 * 4 3 2 32 32 H 1.08998 * 109.47152 * 306.05763 * 5 4 3 33 33 H 1.08999 * 109.46945 * 66.05495 * 5 4 3 34 34 H 1.08995 * 109.46869 * 186.05226 * 5 4 3 35 35 H 0.96998 * 119.99600 * 180.02562 * 13 12 10 36 36 H 1.08000 * 119.99922 * 359.97438 * 19 18 8 37 37 H 1.07997 * 119.99706 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99685 * 179.71863 * 21 20 19 39 39 H 1.08004 * 119.99711 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00449 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4670 2.1861 -1.2081 5 6 2.0081 1.5608 -2.4955 6 6 1.6018 2.1301 1.2673 7 8 0.5468 2.7167 1.3023 8 6 2.4802 2.0859 2.4910 9 1 3.5270 2.1117 2.1882 10 6 2.2103 0.8168 3.2576 11 1 3.0054 0.1040 3.4192 12 6 0.9482 0.5655 3.7526 13 7 -0.0275 1.4187 3.5294 14 14 0.6240 -0.9866 4.7400 15 1 0.8647 -0.7164 6.1802 16 1 -0.7853 -1.4122 4.5448 17 1 1.5350 -2.0653 4.2798 18 6 2.1814 3.2750 3.3672 19 6 2.1912 3.1399 4.7429 20 6 1.9176 4.2309 5.5465 21 6 1.6350 5.4572 4.9745 22 6 1.6255 5.5924 3.5989 23 6 1.8974 4.5011 2.7952 24 1 -0.3633 0.4180 -0.9388 25 1 -0.3634 -1.0220 0.1075 26 1 -0.3632 0.6041 0.8314 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.1287 1.4429 -0.0558 30 1 0.3795 2.1126 -1.1976 31 1 1.7608 3.2348 -1.1622 32 1 3.0972 1.5369 -2.4579 33 1 1.6256 0.5450 -2.5946 34 1 1.6869 2.1551 -3.3508 35 1 -0.9153 1.2421 3.8779 36 1 2.4127 2.1820 5.1899 37 1 1.9249 4.1252 6.6213 38 1 1.4167 6.3084 5.6024 39 1 1.4043 6.5504 3.1520 40 1 1.8896 4.6066 1.7203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055026383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:42 Heat of formation + Delta-G solvation = -42.139069 kcal Electronic energy + Delta-G solvation = -20532.007379 eV Core-core repulsion = 17696.669853 eV Total energy + Delta-G solvation = -2835.337526 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83696 -39.22491 -36.56112 -35.35698 -32.64007 -31.93994 -31.37829 -29.57855 -27.92869 -25.62693 -24.20547 -23.05606 -22.62663 -21.13765 -19.37950 -18.28364 -17.26488 -16.88613 -16.48849 -16.29386 -15.74820 -15.49114 -15.33427 -14.61160 -14.24940 -14.00736 -13.93138 -13.77749 -13.65730 -13.15264 -13.01473 -12.83023 -12.76929 -12.54217 -12.47106 -12.23935 -12.13506 -11.77065 -11.71973 -11.42270 -11.32953 -11.20095 -11.07328 -10.58388 -9.61678 -9.39562 -9.03998 -7.97233 -6.16445 0.87080 0.94198 1.38596 1.44209 1.49463 1.95591 2.45353 3.25563 3.26295 3.76349 4.03522 4.18889 4.30768 4.35000 4.42208 4.50508 4.53407 4.63987 4.65319 4.74895 4.90907 4.96188 4.99495 5.01757 5.02893 5.10123 5.14430 5.27009 5.36954 5.43799 5.46772 5.50985 5.56533 5.58328 5.69420 5.78741 5.88407 5.96373 6.06076 6.44265 6.53688 6.84466 7.48017 7.56422 8.97115 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.010345 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.959163 B = 2705.940931 C = 4031.122680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 C -0.130 4.130 4 C -0.108 4.108 5 C -0.142 4.142 6 C 0.375 3.625 7 O -0.466 6.466 8 C 0.017 3.983 9 H 0.061 0.939 10 C -0.526 4.526 11 H 0.063 0.937 12 C 0.046 3.954 13 N -0.854 5.854 14 Si 0.922 3.078 15 H -0.279 1.279 16 H -0.295 1.295 17 H -0.263 1.263 18 C -0.023 4.023 19 C -0.098 4.098 20 C -0.145 4.145 21 C -0.147 4.147 22 C -0.139 4.139 23 C -0.132 4.132 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.251 0.749 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 1.433 -5.637 7.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.134 4.134 3 C -0.150 4.150 4 C -0.146 4.146 5 C -0.199 4.199 6 C 0.250 3.750 7 O -0.340 6.340 8 C -0.002 4.002 9 H 0.079 0.921 10 C -0.564 4.564 11 H 0.081 0.919 12 C -0.160 4.160 13 N -0.487 5.487 14 Si 0.749 3.251 15 H -0.205 1.205 16 H -0.221 1.221 17 H -0.188 1.188 18 C -0.024 4.024 19 C -0.116 4.116 20 C -0.163 4.163 21 C -0.165 4.165 22 C -0.157 4.157 23 C -0.150 4.150 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.970 1.787 -5.597 7.091 hybrid contribution -0.640 -1.007 0.869 1.476 sum 3.330 0.780 -4.727 5.835 Atomic orbital electron populations 1.21803 0.96980 1.00612 1.01481 1.21267 0.95367 0.94359 1.02357 1.21770 1.01716 0.97088 0.94393 1.21395 1.00405 0.98489 0.94273 1.21744 1.01440 1.00992 0.95709 1.24720 0.86354 0.74969 0.88908 1.90251 1.23047 1.36472 1.84188 1.18537 0.95679 0.93417 0.92554 0.92108 1.20713 0.95784 1.04397 1.35474 0.91886 1.25449 0.96311 0.97767 0.96452 1.70312 1.00923 1.35050 1.42431 0.86103 0.77057 0.82109 0.79842 1.20515 1.22125 1.18764 1.20081 0.94017 0.93622 0.94677 1.21041 0.98969 0.97706 0.93890 1.21297 1.01773 0.93541 0.99730 1.21138 1.02735 0.97702 0.94918 1.21176 1.01735 0.98523 0.94280 1.20982 1.01730 0.93606 0.98712 0.92351 0.93358 0.94269 0.89570 0.92393 0.88837 0.92908 0.93268 0.91734 0.92105 0.91915 0.93921 0.87462 0.85728 0.84569 0.85285 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 9.14 71.98 0.66 -5.04 16 2 C -0.10 -3.33 5.38 30.60 0.16 -3.17 16 3 C -0.13 -4.64 2.45 -11.54 -0.03 -4.67 16 4 C -0.11 -3.40 4.63 30.59 0.14 -3.26 16 5 C -0.14 -3.29 9.51 71.98 0.68 -2.60 16 6 C 0.38 16.82 3.23 29.10 0.09 16.91 16 7 O -0.47 -23.88 12.08 -1.46 -0.02 -23.90 16 8 C 0.02 0.81 2.73 -13.03 -0.04 0.77 16 9 H 0.06 2.63 8.10 -2.39 -0.02 2.61 16 10 C -0.53 -25.96 6.58 25.60 0.17 -25.79 16 11 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 12 C 0.05 2.34 4.25 84.65 0.36 2.70 16 13 N -0.85 -47.00 10.10 21.45 0.22 -46.78 16 14 Si 0.92 41.44 29.54 68.60 2.03 43.47 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 C -0.02 -1.11 4.24 -19.86 -0.08 -1.19 16 19 C -0.10 -4.55 8.32 22.27 0.19 -4.36 16 20 C -0.15 -5.85 10.05 22.27 0.22 -5.63 16 21 C -0.15 -5.44 10.05 22.27 0.22 -5.21 16 22 C -0.14 -5.42 10.05 22.27 0.22 -5.20 16 23 C -0.13 -5.87 8.36 22.27 0.19 -5.69 16 24 H 0.06 1.97 6.62 -2.39 -0.02 1.95 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 1.82 6.39 -2.39 -0.02 1.81 16 27 H 0.09 2.38 6.85 -2.38 -0.02 2.37 16 28 H 0.06 2.25 7.40 -2.39 -0.02 2.23 16 29 H 0.09 2.97 8.08 -2.38 -0.02 2.95 16 30 H 0.05 1.85 6.11 -2.39 -0.01 1.84 16 31 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.34 6.94 -2.39 -0.02 1.32 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 36 H 0.11 5.20 6.52 -2.91 -0.02 5.18 16 37 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 39 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 40 H 0.10 4.29 6.92 -2.91 -0.02 4.27 16 Total: -1.00 -59.39 314.78 6.40 -52.99 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 1.01 Total: 25.65 kcal Atomic # 6 Polarization: -54.59 SS G_CDS: 3.16 Total: -51.43 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.22 Total: -46.78 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.02 Total: -23.90 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -59.39 6.40 -52.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055026383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.853 kcal (2) G-P(sol) polarization free energy of solvation -59.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds