Wall clock time and date at job start Mon Mar 30 2020 06:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00005 * 2 1 4 4 H 1.48493 * 109.47250 * 270.00322 * 3 2 1 5 5 H 1.48508 * 109.47026 * 30.00014 * 3 2 1 6 6 H 1.48503 * 109.47176 * 149.99724 * 3 2 1 7 7 C 1.37875 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99923 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46811 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.46913 * 179.97438 * 10 9 7 12 12 C 1.40005 * 120.00011 * 179.97438 * 11 10 9 13 13 C 1.38861 * 119.99852 * 180.02562 * 12 11 10 14 14 C 1.38095 * 119.99687 * 179.97438 * 13 12 11 15 15 C 1.38857 * 120.00123 * 0.02562 * 14 13 12 16 16 N 1.40005 * 119.99959 * 179.97438 * 15 14 13 17 17 C 1.48533 * 111.00046 * 116.89628 * 16 15 14 18 18 C 1.54930 * 103.22949 * 159.71993 * 17 16 15 19 19 C 1.54600 * 102.91907 * 322.58575 * 18 17 16 20 20 C 1.47898 * 110.99674 * 234.29035 * 16 15 14 21 21 C 1.38859 * 119.99748 * 0.25442 * 15 14 13 22 22 C 1.38088 * 120.00307 * 359.48680 * 21 15 14 23 23 H 0.97000 * 119.99687 * 0.02562 * 1 2 3 24 24 H 1.08990 * 109.47391 * 59.99941 * 9 7 2 25 25 H 1.09001 * 109.46930 * 299.99389 * 9 7 2 26 26 H 1.09006 * 109.47165 * 59.99932 * 10 9 7 27 27 H 1.09001 * 109.47254 * 299.99655 * 10 9 7 28 28 H 0.97000 * 120.00221 * 0.02562 * 11 10 9 29 29 H 1.08000 * 120.00271 * 359.97438 * 13 12 11 30 30 H 1.08007 * 119.99864 * 180.02562 * 14 13 12 31 31 H 1.09005 * 110.66495 * 278.15915 * 17 16 15 32 32 H 1.09002 * 110.66858 * 41.28084 * 17 16 15 33 33 H 1.09000 * 110.72569 * 204.23001 * 18 17 16 34 34 H 1.08995 * 110.72507 * 80.94108 * 18 17 16 35 35 H 1.09002 * 110.30609 * 263.03780 * 19 18 17 36 36 H 1.08995 * 110.30628 * 140.87567 * 19 18 17 37 37 H 1.08998 * 109.92060 * 333.50842 * 20 16 15 38 38 H 1.08999 * 109.91792 * 94.61214 * 20 16 15 39 39 H 1.08003 * 119.99835 * 179.72912 * 21 15 14 40 40 H 1.07998 * 120.00436 * 180.25117 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 7 5.4865 -2.6365 -0.0001 12 6 6.1865 -3.8490 0.0003 13 6 7.5751 -3.8489 0.0008 14 6 8.2656 -5.0449 0.0017 15 6 7.5713 -6.2474 0.0017 16 7 8.2713 -7.4599 0.0021 17 6 7.9938 -8.2344 1.2388 18 6 8.3831 -9.6815 0.8457 19 6 7.9145 -9.7783 -0.6244 20 6 7.8388 -8.3220 -1.1191 21 6 6.1827 -6.2474 -0.0047 22 6 5.4922 -5.0515 -0.0002 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6808 0.8904 25 1 3.8752 -0.6796 -0.8895 26 1 3.6585 -3.1502 -0.8904 27 1 3.6579 -3.1506 0.8897 28 1 5.9715 -1.7965 0.0003 29 1 8.1151 -2.9136 0.0004 30 1 9.3456 -5.0449 0.0025 31 1 8.6136 -7.8794 2.0622 32 1 6.9369 -8.1775 1.4993 33 1 7.8555 -10.4052 1.4671 34 1 9.4613 -9.8238 0.9170 35 1 6.9322 -10.2477 -0.6782 36 1 8.6367 -10.3416 -1.2153 37 1 6.8144 -8.0784 -1.4011 38 1 8.5020 -8.1818 -1.9726 39 1 5.6427 -7.1827 -0.0092 40 1 4.4123 -5.0515 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058798927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:43 Heat of formation + Delta-G solvation = 26.842611 kcal Electronic energy + Delta-G solvation = -18534.665771 eV Core-core repulsion = 15734.612266 eV Total energy + Delta-G solvation = -2800.053505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.10293 -38.19337 -35.52126 -33.16761 -31.89423 -30.72215 -30.03592 -29.01349 -26.95318 -24.51771 -23.10907 -21.94502 -21.06703 -20.46904 -20.31392 -17.49869 -16.92956 -16.54684 -16.01280 -15.11304 -14.40391 -14.35722 -14.19013 -14.11562 -13.74886 -13.29798 -13.20370 -13.12096 -12.63821 -12.36164 -12.21324 -11.71789 -11.56123 -11.50361 -11.37348 -11.22579 -10.87739 -10.79054 -10.49432 -10.10377 -9.95909 -9.42901 -9.38532 -8.74591 -8.65052 -8.56536 -6.99467 -6.15360 -4.15621 1.60472 1.74180 3.23315 3.31278 3.32921 3.85543 3.96989 3.99903 4.34932 4.50747 4.62957 4.77603 5.05017 5.14284 5.18165 5.19890 5.32127 5.49097 5.55679 5.57867 5.62090 5.74589 5.79168 5.81135 5.90040 5.97144 6.01873 6.11469 6.18509 6.34586 6.48492 6.58317 6.68986 6.74610 6.90287 7.02594 7.19988 7.48195 7.58437 7.78620 8.11279 8.40096 8.87529 9.45287 10.97607 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.046344 B = 0.003243 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.028713 B = 8632.126975 C = 9003.882935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.075 0.925 9 C -0.021 4.021 10 C 0.133 3.867 11 N -0.744 5.744 12 C 0.227 3.773 13 C -0.202 4.202 14 C -0.044 4.044 15 C -0.001 4.001 16 N -0.474 5.474 17 C 0.038 3.962 18 C -0.124 4.124 19 C -0.132 4.132 20 C 0.036 3.964 21 C -0.097 4.097 22 C -0.190 4.190 23 H 0.265 0.735 24 H 0.021 0.979 25 H 0.017 0.983 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.396 0.604 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.484 -15.697 0.293 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.093 0.907 9 C -0.059 4.059 10 C 0.010 3.990 11 N -0.370 5.370 12 C 0.120 3.880 13 C -0.226 4.226 14 C -0.064 4.064 15 C -0.097 4.097 16 N -0.195 5.195 17 C -0.089 4.089 18 C -0.162 4.162 19 C -0.170 4.170 20 C -0.091 4.091 21 C -0.117 4.117 22 C -0.213 4.213 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.230 0.770 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 17.624 -15.448 0.247 23.437 hybrid contribution -0.489 1.114 0.004 1.216 sum 17.135 -14.335 0.250 22.342 Atomic orbital electron populations 1.69902 1.06293 1.27120 1.50373 1.24997 0.94767 0.99202 0.94285 0.86747 0.80279 0.83488 0.78556 1.20197 1.21225 1.19085 1.20909 0.88674 0.94821 1.51830 0.90733 1.19748 0.97812 0.91475 0.96858 1.21475 0.76864 1.00383 1.00238 1.45297 1.06971 1.04597 1.80127 1.18024 0.91045 0.86880 0.92028 1.20522 0.92068 0.98224 1.11741 1.20585 0.99257 0.90221 0.96322 1.18593 0.90213 0.90914 1.10021 1.62396 1.53027 1.01815 1.02299 1.23323 0.99818 0.92546 0.93193 1.22490 1.01700 0.96187 0.95850 1.22412 1.01508 0.96471 0.96624 1.22981 0.99862 0.91564 0.94707 1.21248 0.94263 0.97435 0.98788 1.20581 0.99946 0.90816 1.09995 0.92512 0.96038 0.96465 0.92770 0.92745 0.77013 0.86262 0.86022 0.90076 0.93349 0.91129 0.90795 0.91552 0.91080 0.93126 0.90435 0.86919 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 10 C 0.13 2.60 4.85 -4.04 -0.02 2.58 16 11 N -0.74 -12.39 5.74 -58.57 -0.34 -12.73 16 12 C 0.23 3.56 6.66 -83.66 -0.56 3.00 16 13 C -0.20 -2.80 9.89 -39.40 -0.39 -3.19 16 14 C -0.04 -0.59 9.96 -39.41 -0.39 -0.98 16 15 C 0.00 -0.02 4.87 -83.67 -0.41 -0.43 16 16 N -0.47 -5.56 5.28 -167.10 -0.88 -6.44 16 17 C 0.04 0.38 6.43 -1.90 -0.01 0.37 16 18 C -0.12 -0.99 7.06 -24.87 -0.18 -1.16 16 19 C -0.13 -1.06 6.93 -25.37 -0.18 -1.24 16 20 C 0.04 0.37 6.49 -2.76 -0.02 0.35 16 21 C -0.10 -1.33 7.90 -39.41 -0.31 -1.64 16 22 C -0.19 -2.93 9.31 -39.41 -0.37 -3.29 16 23 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 25 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 26 H 0.05 1.07 7.95 -51.93 -0.41 0.66 16 27 H 0.05 1.08 7.95 -51.93 -0.41 0.66 16 28 H 0.40 6.06 8.49 -40.82 -0.35 5.71 16 29 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.51 7.04 -51.93 -0.37 0.15 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.55 6.29 -51.93 -0.33 0.22 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.11 1.39 7.03 -52.48 -0.37 1.02 16 40 H 0.12 1.93 6.73 -52.49 -0.35 1.58 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -29.64 320.36 -9.98 -39.62 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.32 Total: 3.85 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -3.37 Total: -19.21 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.45 Total: -45.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.64 -9.98 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058798927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.466 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds