Wall clock time and date at job start Mon Mar 30 2020 06:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00005 * 2 1 4 4 H 1.48493 * 109.47250 * 270.00322 * 3 2 1 5 5 H 1.48508 * 109.47026 * 30.00014 * 3 2 1 6 6 H 1.48503 * 109.47176 * 149.99724 * 3 2 1 7 7 C 1.37875 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99923 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46811 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.46913 * 179.97438 * 10 9 7 12 12 C 1.40005 * 120.00011 * 179.97438 * 11 10 9 13 13 C 1.38861 * 119.99852 * 180.02562 * 12 11 10 14 14 C 1.38095 * 119.99687 * 179.97438 * 13 12 11 15 15 C 1.38857 * 120.00123 * 0.02562 * 14 13 12 16 16 N 1.40005 * 119.99959 * 179.97438 * 15 14 13 17 17 C 1.48533 * 111.00046 * 116.89628 * 16 15 14 18 18 C 1.54930 * 103.22949 * 159.71993 * 17 16 15 19 19 C 1.54600 * 102.91907 * 322.58575 * 18 17 16 20 20 C 1.47898 * 110.99674 * 234.29035 * 16 15 14 21 21 C 1.38859 * 119.99748 * 0.25442 * 15 14 13 22 22 C 1.38088 * 120.00307 * 359.48680 * 21 15 14 23 23 H 0.97000 * 119.99687 * 0.02562 * 1 2 3 24 24 H 1.08990 * 109.47391 * 59.99941 * 9 7 2 25 25 H 1.09001 * 109.46930 * 299.99389 * 9 7 2 26 26 H 1.09006 * 109.47165 * 59.99932 * 10 9 7 27 27 H 1.09001 * 109.47254 * 299.99655 * 10 9 7 28 28 H 0.97000 * 120.00221 * 0.02562 * 11 10 9 29 29 H 1.08000 * 120.00271 * 359.97438 * 13 12 11 30 30 H 1.08007 * 119.99864 * 180.02562 * 14 13 12 31 31 H 1.09005 * 110.66495 * 278.15915 * 17 16 15 32 32 H 1.09002 * 110.66858 * 41.28084 * 17 16 15 33 33 H 1.09000 * 110.72569 * 204.23001 * 18 17 16 34 34 H 1.08995 * 110.72507 * 80.94108 * 18 17 16 35 35 H 1.09002 * 110.30609 * 263.03780 * 19 18 17 36 36 H 1.08995 * 110.30628 * 140.87567 * 19 18 17 37 37 H 1.08998 * 109.92060 * 333.50842 * 20 16 15 38 38 H 1.08999 * 109.91792 * 94.61214 * 20 16 15 39 39 H 1.08003 * 119.99835 * 179.72912 * 21 15 14 40 40 H 1.07998 * 120.00436 * 180.25117 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 7 5.4865 -2.6365 -0.0001 12 6 6.1865 -3.8490 0.0003 13 6 7.5751 -3.8489 0.0008 14 6 8.2656 -5.0449 0.0017 15 6 7.5713 -6.2474 0.0017 16 7 8.2713 -7.4599 0.0021 17 6 7.9938 -8.2344 1.2388 18 6 8.3831 -9.6815 0.8457 19 6 7.9145 -9.7783 -0.6244 20 6 7.8388 -8.3220 -1.1191 21 6 6.1827 -6.2474 -0.0047 22 6 5.4922 -5.0515 -0.0002 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6808 0.8904 25 1 3.8752 -0.6796 -0.8895 26 1 3.6585 -3.1502 -0.8904 27 1 3.6579 -3.1506 0.8897 28 1 5.9715 -1.7965 0.0003 29 1 8.1151 -2.9136 0.0004 30 1 9.3456 -5.0449 0.0025 31 1 8.6136 -7.8794 2.0622 32 1 6.9369 -8.1775 1.4993 33 1 7.8555 -10.4052 1.4671 34 1 9.4613 -9.8238 0.9170 35 1 6.9322 -10.2477 -0.6782 36 1 8.6367 -10.3416 -1.2153 37 1 6.8144 -8.0784 -1.4011 38 1 8.5020 -8.1818 -1.9726 39 1 5.6427 -7.1827 -0.0092 40 1 4.4123 -5.0515 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058798927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:43 Heat of formation + Delta-G solvation = 8.947706 kcal Electronic energy + Delta-G solvation = -18535.441752 eV Core-core repulsion = 15734.612266 eV Total energy + Delta-G solvation = -2800.829486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09160 -39.23506 -36.87657 -35.00547 -33.19987 -31.82776 -31.54470 -29.76640 -28.26697 -26.13345 -24.23257 -23.21901 -22.00812 -21.76421 -21.33306 -19.12117 -18.43107 -17.64921 -16.94748 -16.28958 -16.25681 -15.92646 -15.34472 -15.08534 -14.92828 -14.58690 -14.28553 -14.24217 -14.13339 -13.54250 -13.37548 -13.13508 -12.90970 -12.62547 -12.25806 -12.19846 -12.03011 -11.99595 -11.94320 -11.79379 -11.49820 -11.43052 -10.84092 -10.68293 -9.84683 -9.48159 -8.33618 -8.21756 -6.39950 0.50029 0.61927 1.35576 1.37294 1.48615 2.33117 2.57571 2.89102 3.01698 3.06410 3.77259 3.93524 3.96939 4.07895 4.13610 4.29942 4.38146 4.43777 4.49054 4.59423 4.63804 4.69636 4.75143 4.83277 4.93322 4.99590 5.06104 5.07774 5.16365 5.18796 5.29320 5.32811 5.39354 5.43189 5.55475 5.64192 5.85515 5.89309 6.17995 6.33849 6.57961 6.66594 6.93308 7.25025 8.82872 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.046344 B = 0.003243 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.028713 B = 8632.126975 C = 9003.882935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.536 4.536 8 H 0.035 0.965 9 C -0.014 4.014 10 C 0.152 3.848 11 N -0.744 5.744 12 C 0.205 3.795 13 C -0.194 4.194 14 C -0.049 4.049 15 C 0.004 3.996 16 N -0.482 5.482 17 C 0.033 3.967 18 C -0.118 4.118 19 C -0.128 4.128 20 C 0.031 3.969 21 C -0.100 4.100 22 C -0.206 4.206 23 H 0.268 0.732 24 H 0.029 0.971 25 H 0.027 0.973 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.404 0.596 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.396 -15.865 0.346 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.575 4.575 8 H 0.053 0.947 9 C -0.052 4.052 10 C 0.027 3.973 11 N -0.373 5.373 12 C 0.101 3.899 13 C -0.217 4.217 14 C -0.068 4.068 15 C -0.092 4.092 16 N -0.203 5.203 17 C -0.093 4.093 18 C -0.156 4.156 19 C -0.166 4.166 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.230 4.230 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.239 0.761 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 20.578 -15.655 0.300 25.857 hybrid contribution -1.382 0.990 -0.016 1.700 sum 19.196 -14.665 0.284 24.159 Atomic orbital electron populations 1.70061 1.08379 1.28390 1.52035 1.26013 0.95649 1.03635 0.93805 0.85593 0.79517 0.77884 0.79227 1.19123 1.21042 1.16703 1.21258 0.91428 0.93480 1.51309 0.94701 1.19612 0.94473 0.93707 0.97389 1.21007 0.78888 0.98019 0.99351 1.44964 1.05430 1.05475 1.81408 1.18178 0.91875 0.86324 0.93515 1.20739 0.91211 0.99438 1.10314 1.20856 1.00268 0.89896 0.95794 1.18826 0.90053 0.91963 1.08320 1.62476 1.52706 1.01708 1.03416 1.23398 0.99463 0.93856 0.92627 1.22488 1.02285 0.94909 0.95879 1.22414 1.02400 0.95018 0.96763 1.23051 0.99249 0.92828 0.94427 1.21350 0.94767 0.97235 0.98697 1.20640 0.99590 0.91728 1.10999 0.92302 0.95305 0.95429 0.93821 0.93814 0.76059 0.84221 0.84117 0.89946 0.94107 0.89634 0.90167 0.90894 0.89702 0.94107 0.90295 0.86035 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 2 C 0.01 0.37 5.47 84.65 0.46 0.83 16 3 Si 0.95 43.16 27.47 68.60 1.88 45.05 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.24 -10.06 6.54 99.48 0.65 -9.40 16 7 C -0.54 -30.46 9.66 25.60 0.25 -30.21 16 8 H 0.03 2.18 7.99 -2.91 -0.02 2.16 16 9 C -0.01 -0.63 4.16 29.85 0.12 -0.51 16 10 C 0.15 5.96 4.85 86.38 0.42 6.38 16 11 N -0.74 -24.14 5.74 -339.21 -1.95 -26.08 16 12 C 0.21 6.28 6.66 38.13 0.25 6.53 16 13 C -0.19 -4.98 9.89 22.38 0.22 -4.76 16 14 C -0.05 -1.19 9.96 22.38 0.22 -0.96 16 15 C 0.00 0.11 4.87 38.13 0.19 0.30 16 16 N -0.48 -10.42 5.28 -682.57 -3.61 -14.03 16 17 C 0.03 0.61 6.43 86.65 0.56 1.16 16 18 C -0.12 -1.57 7.06 31.80 0.22 -1.35 16 19 C -0.13 -1.75 6.93 31.47 0.22 -1.53 16 20 C 0.03 0.59 6.49 86.45 0.56 1.15 16 21 C -0.10 -2.70 7.90 22.38 0.18 -2.53 16 22 C -0.21 -6.39 9.31 22.38 0.21 -6.18 16 23 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 24 H 0.03 1.26 7.20 -2.39 -0.02 1.25 16 25 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 26 H 0.04 1.78 7.95 -2.38 -0.02 1.76 16 27 H 0.04 1.79 7.95 -2.39 -0.02 1.77 16 28 H 0.40 11.61 8.49 -92.71 -0.79 10.83 16 29 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 30 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 31 H 0.08 1.48 8.14 -2.38 -0.02 1.47 16 32 H 0.04 0.81 7.04 -2.39 -0.02 0.80 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.04 0.84 6.29 -2.39 -0.02 0.83 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 2.98 7.03 -2.91 -0.02 2.96 16 40 H 0.11 3.62 6.73 -2.91 -0.02 3.60 16 Total: -1.00 -64.33 320.36 0.89 -63.45 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.18 Total: 21.96 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 4.08 Total: -31.68 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -5.25 Total: -98.77 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.05 kcal Total: -64.33 0.89 -63.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058798927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.394 kcal (2) G-P(sol) polarization free energy of solvation -64.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds