Wall clock time and date at job start Mon Mar 30 2020 07:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46934 * 2 1 4 4 H 1.09001 * 109.47402 * 42.97386 * 3 2 1 5 5 C 1.50700 * 109.47471 * 162.97440 * 3 2 1 6 6 H 1.07993 * 120.00359 * 119.99471 * 5 3 2 7 7 C 1.37882 * 119.99860 * 300.00020 * 5 3 2 8 8 N 1.31519 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00011 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46761 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46910 * 119.99726 * 9 7 5 12 12 H 1.48493 * 109.46772 * 239.99843 * 9 7 5 13 13 N 1.46902 * 109.46900 * 282.97318 * 3 2 1 14 14 C 1.46980 * 111.00111 * 166.41006 * 13 3 2 15 15 C 1.51630 * 110.99660 * 323.60001 * 14 13 3 16 16 N 1.45686 * 114.06118 * 292.70959 * 15 14 13 17 17 C 1.47005 * 112.38043 * 67.86200 * 16 15 14 18 18 C 1.51464 * 108.37268 * 275.94767 * 17 16 15 19 19 C 1.38100 * 119.90019 * 249.09469 * 18 17 16 20 20 C 1.38380 * 119.68029 * 180.29033 * 19 18 17 21 21 C 1.38313 * 120.17857 * 0.08705 * 20 19 18 22 22 C 1.38159 * 120.18282 * 359.87765 * 21 20 19 23 23 C 1.37992 * 119.75856 * 69.29506 * 18 17 16 24 24 H 1.09002 * 109.47462 * 318.28362 * 1 2 3 25 25 H 1.08993 * 109.47489 * 78.29119 * 1 2 3 26 26 H 1.09003 * 109.46894 * 198.28975 * 1 2 3 27 27 H 1.08994 * 109.47407 * 239.99620 * 2 1 3 28 28 H 1.08996 * 109.47016 * 119.99607 * 2 1 3 29 29 H 0.96996 * 119.99734 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.17378 * 203.21017 * 14 13 3 31 31 H 1.09003 * 109.17365 * 83.98811 * 14 13 3 32 32 H 1.08995 * 108.55991 * 171.52980 * 15 14 13 33 33 H 1.08993 * 108.45018 * 53.81146 * 15 14 13 34 34 H 1.00903 * 110.99821 * 302.89058 * 16 15 14 35 35 H 1.08993 * 109.68385 * 156.22192 * 17 16 15 36 36 H 1.09001 * 109.68243 * 35.66653 * 17 16 15 37 37 H 1.08006 * 120.16362 * 0.31854 * 19 18 17 38 38 H 1.07998 * 119.91501 * 180.10551 * 20 19 18 39 39 H 1.07993 * 119.90721 * 179.59809 * 21 20 19 40 40 H 1.08001 * 120.20983 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.4522 2.0357 0.7005 5 6 3.4882 1.4634 0.4160 6 1 4.2372 1.8571 -0.2550 7 6 3.8571 0.9797 1.6534 8 7 2.9449 0.5006 2.4708 9 14 5.6524 1.0049 2.1688 10 1 6.4724 1.5902 1.0778 11 1 5.8035 1.8269 3.3963 12 1 6.1084 -0.3816 2.4422 13 7 1.9100 2.0077 -1.3497 14 6 2.0804 3.4675 -1.3281 15 6 1.4759 4.0665 -0.0731 16 7 0.0240 3.9665 -0.0071 17 6 -0.4352 2.5783 0.1450 18 6 -0.4981 1.9431 -1.2285 19 6 -1.7217 1.6277 -1.7857 20 6 -1.7736 1.0419 -3.0384 21 6 -0.6058 0.7719 -3.7286 22 6 0.6187 1.0877 -3.1723 23 6 0.6694 1.6788 -1.9151 24 1 -0.3634 0.7671 0.6839 25 1 -0.3634 0.2085 -1.0062 26 1 -0.3633 -0.9758 0.3225 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2044 0.1607 3.3414 30 1 1.5911 3.8980 -2.2017 31 1 3.1438 3.7043 -1.3614 32 1 1.7539 5.1192 -0.0225 33 1 1.8986 3.5550 0.7915 34 1 -0.4054 4.4036 -0.8088 35 1 -1.4253 2.5669 0.6006 36 1 0.2647 2.0269 0.7728 37 1 -2.6338 1.8375 -1.2467 38 1 -2.7285 0.7952 -3.4784 39 1 -0.6512 0.3087 -4.7031 40 1 1.5309 0.8767 -3.7107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062818991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:06 Heat of formation + Delta-G solvation = 112.812540 kcal Electronic energy + Delta-G solvation = -21374.399142 eV Core-core repulsion = 18578.073573 eV Total energy + Delta-G solvation = -2796.325569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32798 -37.14375 -34.56188 -33.43143 -32.35514 -30.14437 -29.79785 -27.43491 -25.71765 -25.05763 -22.90426 -22.08428 -21.23156 -20.54273 -18.87401 -16.64725 -16.42172 -15.80367 -15.32515 -14.76396 -14.45298 -14.29258 -14.17053 -13.55411 -13.17111 -12.95757 -12.61244 -12.41894 -12.01006 -11.63454 -11.40289 -11.22358 -11.02510 -10.89736 -10.83634 -10.69179 -10.64384 -10.37353 -9.91549 -9.61775 -9.22268 -9.02387 -8.46186 -8.41144 -8.20264 -7.57225 -7.16044 -6.05669 -4.10402 1.74544 1.80674 3.27209 3.35875 3.40022 4.11941 4.36405 4.81868 4.83461 5.17139 5.21061 5.25354 5.38592 5.54315 5.69449 5.80242 5.87808 5.96343 6.05018 6.14908 6.26083 6.30435 6.33904 6.43741 6.52837 6.58706 6.65705 6.77672 6.85971 6.98425 7.03084 7.09574 7.16530 7.32445 7.41632 7.51469 7.76095 7.79292 7.83468 8.12422 8.29020 8.56654 8.95273 9.53748 10.99124 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.007973 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.725922 B = 3510.801895 C = 3697.908161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C 0.188 3.812 4 H 0.049 0.951 5 C -0.498 4.498 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.891 5.891 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.495 5.495 14 C 0.040 3.960 15 C 0.011 3.989 16 N -0.678 5.678 17 C 0.042 3.958 18 C -0.110 4.110 19 C -0.129 4.129 20 C -0.133 4.133 21 C -0.130 4.130 22 C -0.105 4.105 23 C 0.110 3.890 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.025 0.975 27 H 0.035 0.965 28 H 0.098 0.902 29 H 0.261 0.739 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.329 0.671 35 H 0.073 0.927 36 H 0.149 0.851 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 3.112 -7.409 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.156 4.156 3 C 0.085 3.915 4 H 0.065 0.935 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.216 5.216 14 C -0.089 4.089 15 C -0.119 4.119 16 N -0.305 5.305 17 C -0.085 4.085 18 C -0.114 4.114 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.124 4.124 23 C 0.015 3.985 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.146 0.854 35 H 0.091 0.909 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.824 2.980 -6.800 10.084 hybrid contribution 0.424 -0.299 -0.187 0.551 sum -6.400 2.681 -6.987 9.847 Atomic orbital electron populations 1.23484 0.99574 1.00202 1.02616 1.21641 0.91972 0.99586 1.02408 1.20112 0.97326 0.91722 0.82347 0.93480 1.21126 0.92259 1.40229 1.00058 0.91962 1.24920 0.97530 0.95345 0.96481 1.69894 1.32622 1.41644 1.08826 0.86469 0.85090 0.77642 0.78410 1.19770 1.21109 1.21121 1.60804 1.25322 1.09208 1.26273 1.22343 1.01850 0.87815 0.96893 1.22264 0.87299 1.01189 1.01180 1.60345 1.07574 1.16329 1.46228 1.22911 1.03481 0.88590 0.93468 1.21229 0.93865 0.98037 0.98308 1.20901 0.96778 1.01102 0.96096 1.20977 0.97786 1.00991 0.95384 1.20964 0.92489 1.01628 0.99852 1.21081 0.97495 0.98778 0.94998 1.18937 0.89320 0.96506 0.93733 0.91565 0.90667 0.95557 0.94646 0.88346 0.92915 0.93358 0.90087 0.91541 0.87707 0.85421 0.90900 0.83468 0.86672 0.86932 0.86733 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.19 7.84 37.16 0.29 -3.89 16 2 C -0.12 -2.80 4.95 -26.73 -0.13 -2.93 16 3 C 0.19 4.41 0.88 -68.86 -0.06 4.35 16 4 H 0.05 1.17 2.30 -51.93 -0.12 1.05 16 5 C -0.50 -13.00 8.01 -34.44 -0.28 -13.27 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.54 5.21 -17.82 -0.09 1.45 16 8 N -0.89 -24.22 11.35 55.43 0.63 -23.59 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.49 -10.31 4.65 -165.70 -0.77 -11.08 16 14 C 0.04 0.74 5.59 -4.47 -0.03 0.71 16 15 C 0.01 0.21 5.86 -5.17 -0.03 0.18 16 16 N -0.68 -11.59 6.74 -116.25 -0.78 -12.38 16 17 C 0.04 0.76 4.42 -4.54 -0.02 0.74 16 18 C -0.11 -1.92 2.31 -104.39 -0.24 -2.16 16 19 C -0.13 -1.97 8.65 -39.58 -0.34 -2.31 16 20 C -0.13 -1.88 9.88 -39.50 -0.39 -2.28 16 21 C -0.13 -1.92 9.97 -39.58 -0.39 -2.32 16 22 C -0.10 -1.80 9.77 -39.32 -0.38 -2.18 16 23 C 0.11 2.06 2.49 -83.81 -0.21 1.86 16 24 H 0.07 1.35 4.05 -51.93 -0.21 1.14 16 25 H 0.08 1.47 2.83 -59.02 -0.17 1.30 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 28 H 0.10 2.62 5.81 -51.93 -0.30 2.32 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 30 H 0.05 0.83 7.77 -51.93 -0.40 0.43 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.10 2.29 5.53 -51.93 -0.29 2.00 16 34 H 0.33 5.13 8.53 -39.29 -0.34 4.79 16 35 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 36 H 0.15 3.16 2.48 -51.93 -0.13 3.03 16 37 H 0.12 1.54 7.98 -52.48 -0.42 1.12 16 38 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 287.44 15.07 4.33 4.33 Total: -1.00 -26.66 287.44 -9.21 -35.87 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -5.28 Total: 13.11 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -2.31 Total: -22.05 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.93 Total: -47.05 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.66 -9.21 -35.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062818991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.680 kcal (2) G-P(sol) polarization free energy of solvation -26.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds