Wall clock time and date at job start Mon Mar 30 2020 07:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46934 * 2 1 4 4 H 1.09001 * 109.47402 * 42.97386 * 3 2 1 5 5 C 1.50700 * 109.47471 * 162.97440 * 3 2 1 6 6 H 1.07993 * 120.00359 * 119.99471 * 5 3 2 7 7 C 1.37882 * 119.99860 * 300.00020 * 5 3 2 8 8 N 1.31519 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00011 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46761 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46910 * 119.99726 * 9 7 5 12 12 H 1.48493 * 109.46772 * 239.99843 * 9 7 5 13 13 N 1.46902 * 109.46900 * 282.97318 * 3 2 1 14 14 C 1.46980 * 111.00111 * 166.41006 * 13 3 2 15 15 C 1.51630 * 110.99660 * 323.60001 * 14 13 3 16 16 N 1.45686 * 114.06118 * 292.70959 * 15 14 13 17 17 C 1.47005 * 112.38043 * 67.86200 * 16 15 14 18 18 C 1.51464 * 108.37268 * 275.94767 * 17 16 15 19 19 C 1.38100 * 119.90019 * 249.09469 * 18 17 16 20 20 C 1.38380 * 119.68029 * 180.29033 * 19 18 17 21 21 C 1.38313 * 120.17857 * 0.08705 * 20 19 18 22 22 C 1.38159 * 120.18282 * 359.87765 * 21 20 19 23 23 C 1.37992 * 119.75856 * 69.29506 * 18 17 16 24 24 H 1.09002 * 109.47462 * 318.28362 * 1 2 3 25 25 H 1.08993 * 109.47489 * 78.29119 * 1 2 3 26 26 H 1.09003 * 109.46894 * 198.28975 * 1 2 3 27 27 H 1.08994 * 109.47407 * 239.99620 * 2 1 3 28 28 H 1.08996 * 109.47016 * 119.99607 * 2 1 3 29 29 H 0.96996 * 119.99734 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.17378 * 203.21017 * 14 13 3 31 31 H 1.09003 * 109.17365 * 83.98811 * 14 13 3 32 32 H 1.08995 * 108.55991 * 171.52980 * 15 14 13 33 33 H 1.08993 * 108.45018 * 53.81146 * 15 14 13 34 34 H 1.00903 * 110.99821 * 302.89058 * 16 15 14 35 35 H 1.08993 * 109.68385 * 156.22192 * 17 16 15 36 36 H 1.09001 * 109.68243 * 35.66653 * 17 16 15 37 37 H 1.08006 * 120.16362 * 0.31854 * 19 18 17 38 38 H 1.07998 * 119.91501 * 180.10551 * 20 19 18 39 39 H 1.07993 * 119.90721 * 179.59809 * 21 20 19 40 40 H 1.08001 * 120.20983 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.4522 2.0357 0.7005 5 6 3.4882 1.4634 0.4160 6 1 4.2372 1.8571 -0.2550 7 6 3.8571 0.9797 1.6534 8 7 2.9449 0.5006 2.4708 9 14 5.6524 1.0049 2.1688 10 1 6.4724 1.5902 1.0778 11 1 5.8035 1.8269 3.3963 12 1 6.1084 -0.3816 2.4422 13 7 1.9100 2.0077 -1.3497 14 6 2.0804 3.4675 -1.3281 15 6 1.4759 4.0665 -0.0731 16 7 0.0240 3.9665 -0.0071 17 6 -0.4352 2.5783 0.1450 18 6 -0.4981 1.9431 -1.2285 19 6 -1.7217 1.6277 -1.7857 20 6 -1.7736 1.0419 -3.0384 21 6 -0.6058 0.7719 -3.7286 22 6 0.6187 1.0877 -3.1723 23 6 0.6694 1.6788 -1.9151 24 1 -0.3634 0.7671 0.6839 25 1 -0.3634 0.2085 -1.0062 26 1 -0.3633 -0.9758 0.3225 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2044 0.1607 3.3414 30 1 1.5911 3.8980 -2.2017 31 1 3.1438 3.7043 -1.3614 32 1 1.7539 5.1192 -0.0225 33 1 1.8986 3.5550 0.7915 34 1 -0.4054 4.4036 -0.8088 35 1 -1.4253 2.5669 0.6006 36 1 0.2647 2.0269 0.7728 37 1 -2.6338 1.8375 -1.2467 38 1 -2.7285 0.7952 -3.4784 39 1 -0.6512 0.3087 -4.7031 40 1 1.5309 0.8767 -3.7107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062818991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:06 Heat of formation + Delta-G solvation = 95.422491 kcal Electronic energy + Delta-G solvation = -21375.153231 eV Core-core repulsion = 18578.073573 eV Total energy + Delta-G solvation = -2797.079658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.77244 -38.49119 -36.15900 -35.04378 -34.08968 -31.69831 -31.09380 -29.12293 -27.37035 -26.47355 -24.67303 -23.50778 -22.73145 -21.91441 -20.46469 -18.41115 -17.90841 -17.42070 -16.79353 -16.37797 -15.96088 -15.74154 -15.61897 -14.94629 -14.67612 -14.49169 -14.20880 -13.81065 -13.57512 -13.28626 -13.06610 -12.93112 -12.73978 -12.52818 -12.32294 -12.18241 -12.14181 -12.11721 -11.61960 -11.29545 -11.05302 -10.74584 -10.37514 -9.81539 -9.52186 -8.98924 -8.71354 -8.07116 -6.17854 0.50003 0.56377 1.39255 1.42512 1.52806 2.42653 2.87786 3.17537 3.31826 3.45953 3.87066 3.98472 4.13211 4.26069 4.35205 4.41047 4.49622 4.58550 4.61433 4.65963 4.73211 4.77307 4.86571 4.93521 5.01265 5.13005 5.20759 5.26616 5.35985 5.41496 5.55141 5.61950 5.68113 5.71346 5.83872 5.89010 6.04787 6.11817 6.34594 6.39952 6.53799 6.92826 6.93928 7.49002 8.95400 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.007973 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.725922 B = 3510.801895 C = 3697.908161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.110 4.110 3 C 0.197 3.803 4 H 0.044 0.956 5 C -0.511 4.511 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.913 5.913 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.509 5.509 14 C 0.042 3.958 15 C 0.023 3.977 16 N -0.673 5.673 17 C 0.048 3.952 18 C -0.121 4.121 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.121 4.121 23 C 0.081 3.919 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.027 0.973 27 H 0.017 0.983 28 H 0.064 0.936 29 H 0.260 0.740 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.342 0.658 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.226 3.526 -8.922 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.149 4.149 3 C 0.092 3.908 4 H 0.060 0.940 5 C -0.549 4.549 6 H 0.066 0.934 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.230 5.230 14 C -0.086 4.086 15 C -0.108 4.108 16 N -0.301 5.301 17 C -0.080 4.080 18 C -0.125 4.125 19 C -0.146 4.146 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.013 4.013 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.161 0.839 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.157 0.843 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.827 3.402 -8.330 12.605 hybrid contribution 0.991 -0.423 0.190 1.094 sum -7.837 2.979 -8.140 11.686 Atomic orbital electron populations 1.23408 0.97004 1.00392 1.03885 1.21454 0.94344 0.99382 0.99703 1.19866 0.95509 0.91517 0.83902 0.93961 1.21387 0.93726 1.39843 0.99986 0.93412 1.25558 1.00837 0.95293 0.96635 1.70005 1.33994 1.42362 1.08944 0.85605 0.81150 0.77442 0.78003 1.19646 1.20611 1.21098 1.60602 1.27520 1.10263 1.24606 1.22339 1.01405 0.87076 0.97803 1.22062 0.87962 1.01685 0.99099 1.60317 1.06705 1.16145 1.46890 1.22665 1.03082 0.88568 0.93636 1.21103 0.94356 0.99171 0.97857 1.21211 0.96594 1.00124 0.96644 1.21412 0.99117 0.99066 0.94580 1.21310 0.91545 1.00391 1.00920 1.21212 0.98700 0.99360 0.94764 1.19027 0.88846 0.98613 0.94795 0.91258 0.88884 0.95437 0.96402 0.91712 0.93061 0.91598 0.91265 0.89517 0.91748 0.83945 0.89215 0.87175 0.84267 0.83244 0.83729 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.86 7.84 71.98 0.56 -7.29 16 2 C -0.11 -5.42 4.95 30.59 0.15 -5.27 16 3 C 0.20 9.53 0.88 44.17 0.04 9.57 16 4 H 0.04 2.19 2.30 -2.39 -0.01 2.18 16 5 C -0.51 -27.74 8.01 25.60 0.21 -27.54 16 6 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 7 C 0.02 0.85 5.21 84.66 0.44 1.29 16 8 N -0.91 -51.40 11.35 21.45 0.24 -51.16 16 9 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 N -0.51 -21.56 4.65 -678.15 -3.16 -24.72 16 14 C 0.04 1.59 5.59 85.84 0.48 2.07 16 15 C 0.02 0.84 5.86 86.08 0.50 1.34 16 16 N -0.67 -22.24 6.74 -521.70 -3.52 -25.76 16 17 C 0.05 1.67 4.42 85.78 0.38 2.05 16 18 C -0.12 -3.96 2.31 -19.71 -0.05 -4.01 16 19 C -0.13 -3.36 8.65 22.27 0.19 -3.16 16 20 C -0.12 -2.90 9.88 22.32 0.22 -2.68 16 21 C -0.12 -3.16 9.97 22.27 0.22 -2.94 16 22 C -0.12 -3.99 9.77 22.44 0.22 -3.77 16 23 C 0.08 2.99 2.49 37.92 0.09 3.09 16 24 H 0.07 2.82 4.05 -2.39 -0.01 2.81 16 25 H 0.09 3.50 2.83 -9.04 -0.03 3.48 16 26 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.02 0.88 8.08 -2.39 -0.02 0.87 16 28 H 0.06 3.60 5.81 -2.39 -0.01 3.59 16 29 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.07 2.21 7.77 -2.39 -0.02 2.19 16 31 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.06 2.91 5.53 -2.39 -0.01 2.90 16 34 H 0.34 9.90 8.53 -89.69 -0.77 9.14 16 35 H 0.09 2.78 7.93 -2.39 -0.02 2.77 16 36 H 0.11 4.80 2.48 -2.39 -0.01 4.80 16 37 H 0.14 3.03 7.98 -2.91 -0.02 3.01 16 38 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.12 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -59.27 287.44 -0.46 -59.72 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.28 Total: 33.28 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 3.67 Total: -37.25 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -6.43 Total: -101.64 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -59.27 -0.46 -59.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062818991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.147 kcal (2) G-P(sol) polarization free energy of solvation -59.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds