Wall clock time and date at job start Mon Mar 30 2020 07:23:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53000 * 109.47106 * 2 1
4 4 H 1.09007 * 109.47084 * 305.38458 * 3 2 1
5 5 C 1.50700 * 109.47470 * 185.38390 * 3 2 1
6 6 H 1.07999 * 120.00078 * 271.83529 * 5 3 2
7 7 C 1.37882 * 119.99906 * 91.82847 * 5 3 2
8 8 N 1.31510 * 119.99690 * 191.73356 * 7 5 3
9 9 Si 1.86801 * 119.99979 * 11.73188 * 7 5 3
10 10 H 1.48500 * 109.46873 * 84.92002 * 9 7 5
11 11 H 1.48502 * 109.46886 * 204.91818 * 9 7 5
12 12 H 1.48500 * 109.47108 * 324.91737 * 9 7 5
13 13 N 1.46896 * 109.47438 * 65.38158 * 3 2 1
14 14 C 1.46982 * 110.99819 * 74.33339 * 13 3 2
15 15 C 1.51623 * 110.99885 * 210.04370 * 14 13 3
16 16 N 1.45683 * 113.95101 * 292.78922 * 15 14 13
17 17 C 1.46781 * 112.52171 * 67.95314 * 16 15 14
18 18 C 1.51460 * 108.28336 * 275.83502 * 17 16 15
19 19 C 1.38109 * 119.90122 * 248.97252 * 18 17 16
20 20 C 1.38375 * 119.67712 * 180.49114 * 19 18 17
21 21 C 1.38312 * 120.18510 * 359.96761 * 20 19 18
22 22 C 1.38155 * 120.18113 * 359.94003 * 21 20 19
23 23 C 1.37992 * 119.75880 * 69.26586 * 18 17 16
24 24 H 1.09002 * 109.46674 * 184.94305 * 1 2 3
25 25 H 1.08999 * 109.46870 * 304.93962 * 1 2 3
26 26 H 1.08995 * 109.47196 * 64.94237 * 1 2 3
27 27 H 1.08998 * 109.47318 * 240.00238 * 2 1 3
28 28 H 1.09000 * 109.47197 * 119.99935 * 2 1 3
29 29 H 0.97007 * 120.00142 * 180.02562 * 8 7 5
30 30 H 1.08993 * 109.16994 * 89.65551 * 14 13 3
31 31 H 1.09000 * 109.16913 * 330.43780 * 14 13 3
32 32 H 1.09004 * 108.56261 * 53.89888 * 15 14 13
33 33 H 1.08997 * 108.56100 * 171.67247 * 15 14 13
34 34 H 1.00895 * 110.99682 * 192.76458 * 16 15 14
35 35 H 1.09002 * 109.76263 * 156.12314 * 17 16 15
36 36 H 1.09003 * 109.69439 * 35.50653 * 17 16 15
37 37 H 1.08007 * 120.16060 * 0.47054 * 19 18 17
38 38 H 1.07998 * 119.90911 * 179.97438 * 20 19 18
39 39 H 1.07996 * 119.90846 * 179.91136 * 21 20 19
40 40 H 1.08000 * 120.21090 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6000 1.9834 -0.8379
5 6 3.5411 1.4447 -0.1333
6 1 4.1616 1.3863 0.7487
7 6 4.1222 1.5211 -1.3813
8 7 5.4096 1.2926 -1.5222
9 14 3.0809 1.9492 -2.8719
10 1 2.9676 3.4252 -2.9891
11 1 3.7205 1.4031 -4.0958
12 1 1.7270 1.3595 -2.7157
13 7 1.6593 2.0965 1.2590
14 6 2.4903 1.6184 2.3732
15 6 1.7236 1.6621 3.6805
16 7 1.4096 3.0094 4.1373
17 6 0.4372 3.6848 3.2698
18 6 1.1864 4.3040 2.1081
19 6 1.2879 5.6777 2.0082
20 6 1.9647 6.2387 0.9396
21 6 2.5375 5.4281 -0.0237
22 6 2.4380 4.0538 0.0763
23 6 1.7591 3.4912 1.1512
24 1 -0.3633 -1.0239 0.0886
25 1 -0.3633 0.5886 0.8424
26 1 -0.3633 0.4352 -0.9309
27 1 1.8933 -0.5138 -0.8900
28 1 1.8933 -0.5138 0.8900
29 1 5.8186 1.3467 -2.4002
30 1 3.3752 2.2492 2.4559
31 1 2.8002 0.5926 2.1739
32 1 0.7909 1.1122 3.5544
33 1 2.3173 1.1650 4.4477
34 1 1.0909 3.0015 5.0945
35 1 -0.0787 4.4639 3.8310
36 1 -0.2866 2.9606 2.8957
37 1 0.8410 6.3110 2.7603
38 1 2.0461 7.3125 0.8575
39 1 3.0634 5.8707 -0.8567
40 1 2.8854 3.4204 -0.6753
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000062818992.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:23:09
Heat of formation + Delta-G solvation = 43.095758 kcal
Electronic energy + Delta-G solvation = -20838.043373 eV
Core-core repulsion = 18038.694657 eV
Total energy + Delta-G solvation = -2799.348715 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-39.88994 -36.68918 -35.85800 -32.60616 -31.96243 -31.05248 -29.57539 -27.84175
-26.04589 -24.90119 -22.84444 -21.79359 -21.00648 -19.92772 -18.87269 -16.97361
-16.60286 -16.16688 -14.97693 -14.68985 -14.43421 -14.21350 -13.83700 -13.59824
-13.18062 -12.90398 -12.74073 -12.57596 -12.04351 -11.99704 -11.68453 -11.29209
-11.16068 -11.00106 -10.88585 -10.81932 -10.31616 -10.16712 -10.09736 -10.02197
-9.78630 -9.32819 -8.70276 -8.33825 -8.17510 -8.02710 -7.01995 -6.24916
-4.21931 2.07261 2.14119 3.16381 3.26563 3.29333 4.25472 4.31662
4.63279 4.92685 5.08692 5.27291 5.46523 5.60701 5.66003 5.77175
5.86845 5.89213 5.91868 5.99804 6.06792 6.10602 6.20058 6.34654
6.43828 6.50551 6.54951 6.66803 6.77232 6.79521 6.92570 7.04058
7.10173 7.16832 7.17960 7.28504 7.36251 7.50100 7.63450 7.70526
8.07202 8.19592 8.38800 8.81338 9.37028 10.87270
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.018009 B = 0.010160 C = 0.007961
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1554.403530 B = 2755.225099 C = 3516.457936
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.106 4.106
3 C 0.172 3.828
4 H 0.046 0.954
5 C -0.546 4.546
6 H 0.083 0.917
7 C 0.081 3.919
8 N -0.883 5.883
9 Si 0.851 3.149
10 H -0.268 1.268
11 H -0.285 1.285
12 H -0.259 1.259
13 N -0.488 5.488
14 C 0.073 3.927
15 C 0.068 3.932
16 N -0.692 5.692
17 C 0.114 3.886
18 C -0.096 4.096
19 C -0.108 4.108
20 C -0.152 4.152
21 C -0.118 4.118
22 C -0.147 4.147
23 C 0.132 3.868
24 H 0.035 0.965
25 H 0.057 0.943
26 H 0.039 0.961
27 H 0.056 0.944
28 H 0.053 0.947
29 H 0.266 0.734
30 H 0.051 0.949
31 H 0.085 0.915
32 H 0.028 0.972
33 H 0.066 0.934
34 H 0.338 0.662
35 H 0.066 0.934
36 H 0.050 0.950
37 H 0.112 0.888
38 H 0.109 0.891
39 H 0.109 0.891
40 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.252 3.658 6.993 12.161
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.144 4.144
3 C 0.066 3.934
4 H 0.063 0.937
5 C -0.584 4.584
6 H 0.101 0.899
7 C -0.123 4.123
8 N -0.519 5.519
9 Si 0.677 3.323
10 H -0.194 1.194
11 H -0.211 1.211
12 H -0.183 1.183
13 N -0.204 5.204
14 C -0.053 4.053
15 C -0.062 4.062
16 N -0.323 5.323
17 C -0.015 4.015
18 C -0.099 4.099
19 C -0.127 4.127
20 C -0.171 4.171
21 C -0.137 4.137
22 C -0.167 4.167
23 C 0.035 3.965
24 H 0.054 0.946
25 H 0.076 0.924
26 H 0.058 0.942
27 H 0.074 0.926
28 H 0.072 0.928
29 H 0.076 0.924
30 H 0.069 0.931
31 H 0.103 0.897
32 H 0.046 0.954
33 H 0.084 0.916
34 H 0.156 0.844
35 H 0.084 0.916
36 H 0.068 0.932
37 H 0.130 0.870
38 H 0.127 0.873
39 H 0.127 0.873
40 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -9.056 3.674 6.663 11.829
hybrid contribution -0.280 0.016 -0.965 1.005
sum -9.337 3.690 5.698 11.544
Atomic orbital electron populations
1.21783 0.97888 0.99524 1.01179 1.21689 0.93321 0.98416 1.00988
1.19996 0.95081 0.91303 0.87061 0.93653 1.21575 0.90038 1.51930
0.94849 0.89924 1.24971 0.94687 0.94341 0.98306 1.69925 1.10869
1.47045 1.24093 0.87283 0.81769 0.79865 0.83335 1.19362 1.21127
1.18317 1.59998 1.51529 1.01696 1.07166 1.21729 0.94227 1.01239
0.88139 1.21515 0.99036 0.88341 0.97293 1.59298 1.47658 1.20336
1.05011 1.20807 0.91888 0.96874 0.91933 1.19377 1.01210 0.92754
0.96540 1.20684 1.00413 0.93668 0.97958 1.20901 1.01477 0.98753
0.95999 1.21055 0.99877 0.94018 0.98725 1.22412 0.97479 0.95350
1.01440 1.18730 0.94130 0.89764 0.93902 0.94632 0.92366 0.94195
0.92566 0.92821 0.92393 0.93058 0.89681 0.95399 0.91561 0.84448
0.91560 0.93188 0.87018 0.87330 0.87257 0.82705
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.59 9.86 37.16 0.37 -2.23 16
2 C -0.11 -2.17 5.40 -26.73 -0.14 -2.31 16
3 C 0.17 3.89 0.96 -68.87 -0.07 3.82 16
4 H 0.05 1.09 4.25 -51.92 -0.22 0.87 16
5 C -0.55 -14.18 6.34 -34.44 -0.22 -14.39 16
6 H 0.08 2.36 6.31 -52.49 -0.33 2.02 16
7 C 0.08 2.20 5.10 -17.82 -0.09 2.11 16
8 N -0.88 -25.65 13.96 55.43 0.77 -24.88 16
9 Si 0.85 20.41 25.43 -169.99 -4.32 16.09 16
10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16
11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
12 H -0.26 -5.99 6.62 56.52 0.37 -5.62 16
13 N -0.49 -10.03 3.54 -165.70 -0.59 -10.62 16
14 C 0.07 1.42 3.85 -4.48 -0.02 1.40 16
15 C 0.07 1.06 6.14 -5.18 -0.03 1.03 16
16 N -0.69 -10.20 6.54 -116.42 -0.76 -10.96 16
17 C 0.11 1.72 6.11 -4.67 -0.03 1.69 16
18 C -0.10 -1.75 5.41 -104.39 -0.57 -2.32 16
19 C -0.11 -1.80 9.69 -39.58 -0.38 -2.18 16
20 C -0.15 -2.61 10.04 -39.50 -0.40 -3.00 16
21 C -0.12 -2.31 10.04 -39.58 -0.40 -2.71 16
22 C -0.15 -3.29 8.28 -39.32 -0.33 -3.61 16
23 C 0.13 2.78 4.92 -83.81 -0.41 2.37 16
24 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16
25 H 0.06 1.02 7.63 -51.93 -0.40 0.63 16
26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16
27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
28 H 0.05 1.07 6.66 -51.93 -0.35 0.72 16
29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16
30 H 0.05 1.14 7.28 -51.93 -0.38 0.76 16
31 H 0.08 1.69 5.85 -51.93 -0.30 1.39 16
32 H 0.03 0.43 7.91 -51.93 -0.41 0.01 16
33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.34 3.92 8.88 -39.29 -0.35 3.57 16
35 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16
36 H 0.05 0.79 7.74 -51.93 -0.40 0.39 16
37 H 0.11 1.53 7.98 -52.48 -0.42 1.11 16
38 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16
39 H 0.11 1.98 8.06 -52.49 -0.42 1.55 16
40 H 0.16 3.80 2.39 -52.49 -0.13 3.67 16
LS Contribution 300.22 15.07 4.52 4.52
Total: -1.00 -28.40 300.22 -8.88 -37.27
By element:
Atomic # 1 Polarization: 14.70 SS G_CDS: -5.79 Total: 8.91 kcal
Atomic # 6 Polarization: -17.63 SS G_CDS: -2.71 Total: -20.34 kcal
Atomic # 7 Polarization: -45.88 SS G_CDS: -0.57 Total: -46.45 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -4.32 Total: 16.09 kcal
Total LS contribution 4.52 Total: 4.52 kcal
Total: -28.40 -8.88 -37.27 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000062818992.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.370 kcal
(2) G-P(sol) polarization free energy of solvation -28.399 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.971 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.096 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds