Wall clock time and date at job start Mon Mar 30 2020 07:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47106 * 2 1 4 4 H 1.09007 * 109.47084 * 305.38458 * 3 2 1 5 5 C 1.50700 * 109.47470 * 185.38390 * 3 2 1 6 6 H 1.07999 * 120.00078 * 271.83529 * 5 3 2 7 7 C 1.37882 * 119.99906 * 91.82847 * 5 3 2 8 8 N 1.31510 * 119.99690 * 191.73356 * 7 5 3 9 9 Si 1.86801 * 119.99979 * 11.73188 * 7 5 3 10 10 H 1.48500 * 109.46873 * 84.92002 * 9 7 5 11 11 H 1.48502 * 109.46886 * 204.91818 * 9 7 5 12 12 H 1.48500 * 109.47108 * 324.91737 * 9 7 5 13 13 N 1.46896 * 109.47438 * 65.38158 * 3 2 1 14 14 C 1.46982 * 110.99819 * 74.33339 * 13 3 2 15 15 C 1.51623 * 110.99885 * 210.04370 * 14 13 3 16 16 N 1.45683 * 113.95101 * 292.78922 * 15 14 13 17 17 C 1.46781 * 112.52171 * 67.95314 * 16 15 14 18 18 C 1.51460 * 108.28336 * 275.83502 * 17 16 15 19 19 C 1.38109 * 119.90122 * 248.97252 * 18 17 16 20 20 C 1.38375 * 119.67712 * 180.49114 * 19 18 17 21 21 C 1.38312 * 120.18510 * 359.96761 * 20 19 18 22 22 C 1.38155 * 120.18113 * 359.94003 * 21 20 19 23 23 C 1.37992 * 119.75880 * 69.26586 * 18 17 16 24 24 H 1.09002 * 109.46674 * 184.94305 * 1 2 3 25 25 H 1.08999 * 109.46870 * 304.93962 * 1 2 3 26 26 H 1.08995 * 109.47196 * 64.94237 * 1 2 3 27 27 H 1.08998 * 109.47318 * 240.00238 * 2 1 3 28 28 H 1.09000 * 109.47197 * 119.99935 * 2 1 3 29 29 H 0.97007 * 120.00142 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.16994 * 89.65551 * 14 13 3 31 31 H 1.09000 * 109.16913 * 330.43780 * 14 13 3 32 32 H 1.09004 * 108.56261 * 53.89888 * 15 14 13 33 33 H 1.08997 * 108.56100 * 171.67247 * 15 14 13 34 34 H 1.00895 * 110.99682 * 192.76458 * 16 15 14 35 35 H 1.09002 * 109.76263 * 156.12314 * 17 16 15 36 36 H 1.09003 * 109.69439 * 35.50653 * 17 16 15 37 37 H 1.08007 * 120.16060 * 0.47054 * 19 18 17 38 38 H 1.07998 * 119.90911 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.90846 * 179.91136 * 21 20 19 40 40 H 1.08000 * 120.21090 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9834 -0.8379 5 6 3.5411 1.4447 -0.1333 6 1 4.1616 1.3863 0.7487 7 6 4.1222 1.5211 -1.3813 8 7 5.4096 1.2926 -1.5222 9 14 3.0809 1.9492 -2.8719 10 1 2.9676 3.4252 -2.9891 11 1 3.7205 1.4031 -4.0958 12 1 1.7270 1.3595 -2.7157 13 7 1.6593 2.0965 1.2590 14 6 2.4903 1.6184 2.3732 15 6 1.7236 1.6621 3.6805 16 7 1.4096 3.0094 4.1373 17 6 0.4372 3.6848 3.2698 18 6 1.1864 4.3040 2.1081 19 6 1.2879 5.6777 2.0082 20 6 1.9647 6.2387 0.9396 21 6 2.5375 5.4281 -0.0237 22 6 2.4380 4.0538 0.0763 23 6 1.7591 3.4912 1.1512 24 1 -0.3633 -1.0239 0.0886 25 1 -0.3633 0.5886 0.8424 26 1 -0.3633 0.4352 -0.9309 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8186 1.3467 -2.4002 30 1 3.3752 2.2492 2.4559 31 1 2.8002 0.5926 2.1739 32 1 0.7909 1.1122 3.5544 33 1 2.3173 1.1650 4.4477 34 1 1.0909 3.0015 5.0945 35 1 -0.0787 4.4639 3.8310 36 1 -0.2866 2.9606 2.8957 37 1 0.8410 6.3110 2.7603 38 1 2.0461 7.3125 0.8575 39 1 3.0634 5.8707 -0.8567 40 1 2.8854 3.4204 -0.6753 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062818992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:09 Heat of formation + Delta-G solvation = 43.095758 kcal Electronic energy + Delta-G solvation = -20838.043373 eV Core-core repulsion = 18038.694657 eV Total energy + Delta-G solvation = -2799.348715 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88994 -36.68918 -35.85800 -32.60616 -31.96243 -31.05248 -29.57539 -27.84175 -26.04589 -24.90119 -22.84444 -21.79359 -21.00648 -19.92772 -18.87269 -16.97361 -16.60286 -16.16688 -14.97693 -14.68985 -14.43421 -14.21350 -13.83700 -13.59824 -13.18062 -12.90398 -12.74073 -12.57596 -12.04351 -11.99704 -11.68453 -11.29209 -11.16068 -11.00106 -10.88585 -10.81932 -10.31616 -10.16712 -10.09736 -10.02197 -9.78630 -9.32819 -8.70276 -8.33825 -8.17510 -8.02710 -7.01995 -6.24916 -4.21931 2.07261 2.14119 3.16381 3.26563 3.29333 4.25472 4.31662 4.63279 4.92685 5.08692 5.27291 5.46523 5.60701 5.66003 5.77175 5.86845 5.89213 5.91868 5.99804 6.06792 6.10602 6.20058 6.34654 6.43828 6.50551 6.54951 6.66803 6.77232 6.79521 6.92570 7.04058 7.10173 7.16832 7.17960 7.28504 7.36251 7.50100 7.63450 7.70526 8.07202 8.19592 8.38800 8.81338 9.37028 10.87270 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.010160 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.403530 B = 2755.225099 C = 3516.457936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C 0.172 3.828 4 H 0.046 0.954 5 C -0.546 4.546 6 H 0.083 0.917 7 C 0.081 3.919 8 N -0.883 5.883 9 Si 0.851 3.149 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.488 5.488 14 C 0.073 3.927 15 C 0.068 3.932 16 N -0.692 5.692 17 C 0.114 3.886 18 C -0.096 4.096 19 C -0.108 4.108 20 C -0.152 4.152 21 C -0.118 4.118 22 C -0.147 4.147 23 C 0.132 3.868 24 H 0.035 0.965 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.266 0.734 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.338 0.662 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.252 3.658 6.993 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C 0.066 3.934 4 H 0.063 0.937 5 C -0.584 4.584 6 H 0.101 0.899 7 C -0.123 4.123 8 N -0.519 5.519 9 Si 0.677 3.323 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.204 5.204 14 C -0.053 4.053 15 C -0.062 4.062 16 N -0.323 5.323 17 C -0.015 4.015 18 C -0.099 4.099 19 C -0.127 4.127 20 C -0.171 4.171 21 C -0.137 4.137 22 C -0.167 4.167 23 C 0.035 3.965 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.056 3.674 6.663 11.829 hybrid contribution -0.280 0.016 -0.965 1.005 sum -9.337 3.690 5.698 11.544 Atomic orbital electron populations 1.21783 0.97888 0.99524 1.01179 1.21689 0.93321 0.98416 1.00988 1.19996 0.95081 0.91303 0.87061 0.93653 1.21575 0.90038 1.51930 0.94849 0.89924 1.24971 0.94687 0.94341 0.98306 1.69925 1.10869 1.47045 1.24093 0.87283 0.81769 0.79865 0.83335 1.19362 1.21127 1.18317 1.59998 1.51529 1.01696 1.07166 1.21729 0.94227 1.01239 0.88139 1.21515 0.99036 0.88341 0.97293 1.59298 1.47658 1.20336 1.05011 1.20807 0.91888 0.96874 0.91933 1.19377 1.01210 0.92754 0.96540 1.20684 1.00413 0.93668 0.97958 1.20901 1.01477 0.98753 0.95999 1.21055 0.99877 0.94018 0.98725 1.22412 0.97479 0.95350 1.01440 1.18730 0.94130 0.89764 0.93902 0.94632 0.92366 0.94195 0.92566 0.92821 0.92393 0.93058 0.89681 0.95399 0.91561 0.84448 0.91560 0.93188 0.87018 0.87330 0.87257 0.82705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.86 37.16 0.37 -2.23 16 2 C -0.11 -2.17 5.40 -26.73 -0.14 -2.31 16 3 C 0.17 3.89 0.96 -68.87 -0.07 3.82 16 4 H 0.05 1.09 4.25 -51.92 -0.22 0.87 16 5 C -0.55 -14.18 6.34 -34.44 -0.22 -14.39 16 6 H 0.08 2.36 6.31 -52.49 -0.33 2.02 16 7 C 0.08 2.20 5.10 -17.82 -0.09 2.11 16 8 N -0.88 -25.65 13.96 55.43 0.77 -24.88 16 9 Si 0.85 20.41 25.43 -169.99 -4.32 16.09 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.26 -5.99 6.62 56.52 0.37 -5.62 16 13 N -0.49 -10.03 3.54 -165.70 -0.59 -10.62 16 14 C 0.07 1.42 3.85 -4.48 -0.02 1.40 16 15 C 0.07 1.06 6.14 -5.18 -0.03 1.03 16 16 N -0.69 -10.20 6.54 -116.42 -0.76 -10.96 16 17 C 0.11 1.72 6.11 -4.67 -0.03 1.69 16 18 C -0.10 -1.75 5.41 -104.39 -0.57 -2.32 16 19 C -0.11 -1.80 9.69 -39.58 -0.38 -2.18 16 20 C -0.15 -2.61 10.04 -39.50 -0.40 -3.00 16 21 C -0.12 -2.31 10.04 -39.58 -0.40 -2.71 16 22 C -0.15 -3.29 8.28 -39.32 -0.33 -3.61 16 23 C 0.13 2.78 4.92 -83.81 -0.41 2.37 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 1.02 7.63 -51.93 -0.40 0.63 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.05 1.07 6.66 -51.93 -0.35 0.72 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.05 1.14 7.28 -51.93 -0.38 0.76 16 31 H 0.08 1.69 5.85 -51.93 -0.30 1.39 16 32 H 0.03 0.43 7.91 -51.93 -0.41 0.01 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.34 3.92 8.88 -39.29 -0.35 3.57 16 35 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 36 H 0.05 0.79 7.74 -51.93 -0.40 0.39 16 37 H 0.11 1.53 7.98 -52.48 -0.42 1.11 16 38 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.98 8.06 -52.49 -0.42 1.55 16 40 H 0.16 3.80 2.39 -52.49 -0.13 3.67 16 LS Contribution 300.22 15.07 4.52 4.52 Total: -1.00 -28.40 300.22 -8.88 -37.27 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.79 Total: 8.91 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.71 Total: -20.34 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.57 Total: -46.45 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.32 Total: 16.09 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.40 -8.88 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062818992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.370 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds