Wall clock time and date at job start Mon Mar 30 2020 07:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47106 * 2 1 4 4 H 1.09007 * 109.47084 * 305.38458 * 3 2 1 5 5 C 1.50700 * 109.47470 * 185.38390 * 3 2 1 6 6 H 1.07999 * 120.00078 * 271.83529 * 5 3 2 7 7 C 1.37882 * 119.99906 * 91.82847 * 5 3 2 8 8 N 1.31510 * 119.99690 * 191.73356 * 7 5 3 9 9 Si 1.86801 * 119.99979 * 11.73188 * 7 5 3 10 10 H 1.48500 * 109.46873 * 84.92002 * 9 7 5 11 11 H 1.48502 * 109.46886 * 204.91818 * 9 7 5 12 12 H 1.48500 * 109.47108 * 324.91737 * 9 7 5 13 13 N 1.46896 * 109.47438 * 65.38158 * 3 2 1 14 14 C 1.46982 * 110.99819 * 74.33339 * 13 3 2 15 15 C 1.51623 * 110.99885 * 210.04370 * 14 13 3 16 16 N 1.45683 * 113.95101 * 292.78922 * 15 14 13 17 17 C 1.46781 * 112.52171 * 67.95314 * 16 15 14 18 18 C 1.51460 * 108.28336 * 275.83502 * 17 16 15 19 19 C 1.38109 * 119.90122 * 248.97252 * 18 17 16 20 20 C 1.38375 * 119.67712 * 180.49114 * 19 18 17 21 21 C 1.38312 * 120.18510 * 359.96761 * 20 19 18 22 22 C 1.38155 * 120.18113 * 359.94003 * 21 20 19 23 23 C 1.37992 * 119.75880 * 69.26586 * 18 17 16 24 24 H 1.09002 * 109.46674 * 184.94305 * 1 2 3 25 25 H 1.08999 * 109.46870 * 304.93962 * 1 2 3 26 26 H 1.08995 * 109.47196 * 64.94237 * 1 2 3 27 27 H 1.08998 * 109.47318 * 240.00238 * 2 1 3 28 28 H 1.09000 * 109.47197 * 119.99935 * 2 1 3 29 29 H 0.97007 * 120.00142 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.16994 * 89.65551 * 14 13 3 31 31 H 1.09000 * 109.16913 * 330.43780 * 14 13 3 32 32 H 1.09004 * 108.56261 * 53.89888 * 15 14 13 33 33 H 1.08997 * 108.56100 * 171.67247 * 15 14 13 34 34 H 1.00895 * 110.99682 * 192.76458 * 16 15 14 35 35 H 1.09002 * 109.76263 * 156.12314 * 17 16 15 36 36 H 1.09003 * 109.69439 * 35.50653 * 17 16 15 37 37 H 1.08007 * 120.16060 * 0.47054 * 19 18 17 38 38 H 1.07998 * 119.90911 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.90846 * 179.91136 * 21 20 19 40 40 H 1.08000 * 120.21090 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9834 -0.8379 5 6 3.5411 1.4447 -0.1333 6 1 4.1616 1.3863 0.7487 7 6 4.1222 1.5211 -1.3813 8 7 5.4096 1.2926 -1.5222 9 14 3.0809 1.9492 -2.8719 10 1 2.9676 3.4252 -2.9891 11 1 3.7205 1.4031 -4.0958 12 1 1.7270 1.3595 -2.7157 13 7 1.6593 2.0965 1.2590 14 6 2.4903 1.6184 2.3732 15 6 1.7236 1.6621 3.6805 16 7 1.4096 3.0094 4.1373 17 6 0.4372 3.6848 3.2698 18 6 1.1864 4.3040 2.1081 19 6 1.2879 5.6777 2.0082 20 6 1.9647 6.2387 0.9396 21 6 2.5375 5.4281 -0.0237 22 6 2.4380 4.0538 0.0763 23 6 1.7591 3.4912 1.1512 24 1 -0.3633 -1.0239 0.0886 25 1 -0.3633 0.5886 0.8424 26 1 -0.3633 0.4352 -0.9309 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8186 1.3467 -2.4002 30 1 3.3752 2.2492 2.4559 31 1 2.8002 0.5926 2.1739 32 1 0.7909 1.1122 3.5544 33 1 2.3173 1.1650 4.4477 34 1 1.0909 3.0015 5.0945 35 1 -0.0787 4.4639 3.8310 36 1 -0.2866 2.9606 2.8957 37 1 0.8410 6.3110 2.7603 38 1 2.0461 7.3125 0.8575 39 1 3.0634 5.8707 -0.8567 40 1 2.8854 3.4204 -0.6753 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062818992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:08 Heat of formation + Delta-G solvation = 23.837820 kcal Electronic energy + Delta-G solvation = -20838.878460 eV Core-core repulsion = 18038.694657 eV Total energy + Delta-G solvation = -2800.183802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39933 -38.23236 -37.20215 -34.52437 -33.63018 -32.43869 -31.03196 -29.56071 -27.65215 -26.24468 -24.61114 -23.28217 -22.45147 -21.34401 -20.58677 -18.89116 -18.20081 -17.48154 -16.61730 -16.29396 -15.95462 -15.51370 -15.41090 -15.06065 -14.77146 -14.63733 -14.34970 -14.10617 -13.73190 -13.38084 -13.29303 -12.92729 -12.82657 -12.53185 -12.35401 -12.13419 -11.90965 -11.81704 -11.74716 -11.64323 -11.61312 -11.16574 -10.71738 -9.98966 -9.56332 -9.27038 -8.62160 -8.37741 -6.35399 0.61841 0.67036 1.22132 1.26900 1.33803 2.22901 2.86580 2.99011 3.25030 3.57674 4.03022 4.16438 4.21728 4.34109 4.37196 4.42486 4.46549 4.51113 4.60255 4.63671 4.72421 4.79876 4.84282 4.93965 4.98657 5.10809 5.12160 5.23239 5.31798 5.32070 5.41802 5.43192 5.58103 5.67791 5.78627 5.80260 6.05340 6.15840 6.23507 6.39056 6.63656 6.68953 6.75745 7.26543 8.78414 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.010160 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.403530 B = 2755.225099 C = 3516.457936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C 0.177 3.823 4 H 0.033 0.967 5 C -0.529 4.529 6 H 0.044 0.956 7 C 0.032 3.968 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.245 1.245 13 N -0.475 5.475 14 C 0.079 3.921 15 C 0.077 3.923 16 N -0.698 5.698 17 C 0.117 3.883 18 C -0.102 4.102 19 C -0.100 4.100 20 C -0.144 4.144 21 C -0.135 4.135 22 C -0.189 4.189 23 C 0.103 3.897 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.266 0.734 30 H 0.011 0.989 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.361 0.639 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.155 0.845 38 H 0.145 0.855 39 H 0.113 0.887 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.234 5.056 8.818 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.070 3.930 4 H 0.051 0.949 5 C -0.568 4.568 6 H 0.062 0.938 7 C -0.167 4.167 8 N -0.573 5.573 9 Si 0.729 3.271 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.169 1.169 13 N -0.191 5.191 14 C -0.048 4.048 15 C -0.053 4.053 16 N -0.332 5.332 17 C -0.012 4.012 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.209 4.209 23 C 0.006 3.994 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.182 0.818 35 H 0.121 0.879 36 H 0.063 0.937 37 H 0.172 0.828 38 H 0.163 0.837 39 H 0.131 0.869 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.069 5.080 8.518 15.622 hybrid contribution 0.693 -0.322 -1.420 1.613 sum -11.376 4.758 7.098 14.228 Atomic orbital electron populations 1.21662 0.95019 1.01331 1.01203 1.21606 0.95823 0.96549 1.00423 1.19865 0.92369 0.92684 0.88129 0.94860 1.21692 0.91907 1.49902 0.93256 0.93771 1.25606 0.95471 0.94585 1.01033 1.70052 1.12729 1.49838 1.24675 0.86411 0.80882 0.79737 0.80054 1.19069 1.21095 1.16871 1.60126 1.50942 1.01951 1.06116 1.21688 0.93544 0.99295 0.90225 1.21345 0.99160 0.89483 0.95292 1.59145 1.48071 1.19589 1.06378 1.20865 0.91322 0.97719 0.91272 1.19851 1.00430 0.93507 0.96629 1.21199 0.99049 0.93427 0.98229 1.21304 0.99782 1.00316 0.94870 1.21234 1.00690 0.93351 1.00086 1.22344 0.99792 0.96589 1.02141 1.19010 0.95563 0.90003 0.94851 0.91951 0.92012 0.94406 0.94002 0.92615 0.92518 0.97087 0.91160 0.94316 0.89574 0.81799 0.87865 0.93662 0.82772 0.83734 0.86859 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.86 71.98 0.71 -3.81 16 2 C -0.11 -4.34 5.40 30.59 0.17 -4.17 16 3 C 0.18 8.20 0.96 44.17 0.04 8.24 16 4 H 0.03 1.63 4.25 -2.38 -0.01 1.62 16 5 C -0.53 -29.04 6.34 25.60 0.16 -28.88 16 6 H 0.04 2.72 6.31 -2.91 -0.02 2.70 16 7 C 0.03 1.84 5.10 84.66 0.43 2.27 16 8 N -0.93 -57.30 13.96 21.45 0.30 -57.01 16 9 Si 0.90 43.81 25.43 68.60 1.74 45.56 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.25 -11.18 6.62 99.48 0.66 -10.52 16 13 N -0.48 -19.66 3.54 -678.17 -2.40 -22.06 16 14 C 0.08 3.13 3.85 85.84 0.33 3.46 16 15 C 0.08 2.25 6.14 86.08 0.53 2.78 16 16 N -0.70 -18.26 6.54 -522.24 -3.41 -21.67 16 17 C 0.12 3.08 6.11 85.82 0.52 3.60 16 18 C -0.10 -3.45 5.41 -19.71 -0.11 -3.56 16 19 C -0.10 -2.94 9.69 22.27 0.22 -2.72 16 20 C -0.14 -4.50 10.04 22.32 0.22 -4.28 16 21 C -0.13 -5.25 10.04 22.27 0.22 -5.03 16 22 C -0.19 -8.64 8.28 22.44 0.19 -8.45 16 23 C 0.10 4.31 4.92 37.93 0.19 4.50 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 2.03 7.63 -2.39 -0.02 2.01 16 26 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 2.23 6.66 -2.39 -0.02 2.21 16 29 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 30 H 0.01 0.50 7.28 -2.39 -0.02 0.48 16 31 H 0.07 2.92 5.85 -2.39 -0.01 2.91 16 32 H 0.04 1.07 7.91 -2.38 -0.02 1.05 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.36 6.79 8.88 -89.70 -0.80 6.00 16 35 H 0.10 1.98 7.93 -2.39 -0.02 1.96 16 36 H 0.05 1.26 7.74 -2.39 -0.02 1.25 16 37 H 0.15 3.23 7.98 -2.91 -0.02 3.21 16 38 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 40 H 0.13 6.39 2.39 -2.91 -0.01 6.39 16 Total: -1.00 -65.92 300.22 0.25 -65.67 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.20 Total: 25.57 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 3.82 Total: -36.06 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -5.52 Total: -100.74 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.74 Total: 45.56 kcal Total: -65.92 0.25 -65.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062818992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.507 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds