Wall clock time and date at job start Mon Mar 30 2020 06:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99973 * 2 1 4 4 H 1.48507 * 109.47124 * 270.00097 * 3 2 1 5 5 H 1.48507 * 109.47170 * 29.99934 * 3 2 1 6 6 H 1.48503 * 109.47279 * 149.99912 * 3 2 1 7 7 C 1.37875 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99828 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46896 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.46952 * 174.77111 * 10 9 7 12 12 C 1.47910 * 111.00228 * 55.83262 * 11 10 9 13 13 C 1.54270 * 102.79496 * 148.74861 * 12 11 10 14 14 H 1.08998 * 110.15707 * 93.10415 * 13 12 11 15 15 C 1.52999 * 111.22539 * 216.35635 * 13 12 11 16 16 C 1.53000 * 109.47171 * 288.33444 * 15 13 12 17 17 N 1.46898 * 109.47295 * 185.07938 * 16 15 13 18 18 C 1.51570 * 102.94677 * 334.98251 * 13 12 11 19 19 C 1.37919 * 131.56247 * 195.49015 * 18 13 12 20 20 C 1.38309 * 120.07750 * 179.30043 * 19 18 13 21 21 C 1.38305 * 119.88630 * 0.03136 * 20 19 18 22 22 C 1.37906 * 120.26582 * 0.13400 * 21 20 19 23 23 C 1.38968 * 107.95858 * 15.38771 * 18 13 12 24 24 H 0.96999 * 119.99940 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47080 * 60.00605 * 9 7 2 26 26 H 1.08997 * 109.47694 * 300.00263 * 9 7 2 27 27 H 1.08999 * 109.46870 * 54.77062 * 10 9 7 28 28 H 1.09004 * 109.47302 * 294.76949 * 10 9 7 29 29 H 1.09002 * 110.78213 * 267.47107 * 12 11 10 30 30 H 1.09008 * 110.78334 * 30.71495 * 12 11 10 31 31 H 1.08999 * 109.47093 * 48.33002 * 15 13 12 32 32 H 1.08997 * 109.47022 * 168.33163 * 15 13 12 33 33 H 1.09000 * 109.47031 * 305.07718 * 16 15 13 34 34 H 1.09004 * 109.47407 * 65.07726 * 16 15 13 35 35 H 1.00899 * 111.00479 * 179.97438 * 17 16 15 36 36 H 1.00900 * 111.00170 * 303.95364 * 17 16 15 37 37 H 1.07994 * 119.96012 * 359.33161 * 19 18 13 38 38 H 1.07998 * 120.05380 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.86260 * 180.16149 * 21 20 19 40 40 H 1.07997 * 119.90298 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5152 -4.9305 0.1257 12 6 0.5018 -5.0674 -0.9430 13 6 0.4495 -6.5923 -1.1708 14 1 -0.3356 -7.0367 -0.5592 15 6 0.2399 -6.9245 -2.6495 16 6 -1.1938 -6.5740 -3.0527 17 7 -1.4323 -7.0044 -4.4369 18 6 1.8169 -7.0522 -0.7059 19 6 2.4999 -8.2344 -0.9012 20 6 3.7666 -8.3989 -0.3707 21 6 4.3472 -7.3759 0.3567 22 6 3.6672 -6.1931 0.5578 23 6 2.3869 -6.0227 0.0332 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.9320 -3.5530 0.8389 28 1 2.8088 -3.6585 -0.9337 29 1 -0.4643 -4.6874 -0.6108 30 1 0.8251 -4.5570 -1.8503 31 1 0.9389 -6.3469 -3.2543 32 1 0.4129 -7.9885 -2.8109 33 1 -1.8926 -7.0825 -2.3886 34 1 -1.3394 -5.4964 -2.9771 35 1 -2.3733 -6.7842 -4.7270 36 1 -0.7554 -6.5964 -5.0642 37 1 2.0453 -9.0324 -1.4694 38 1 4.3012 -9.3246 -0.5242 39 1 5.3374 -7.5038 0.7686 40 1 4.1260 -5.3984 1.1271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063128788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:08 Heat of formation + Delta-G solvation = 19.200553 kcal Electronic energy + Delta-G solvation = -19248.964332 eV Core-core repulsion = 16448.579443 eV Total energy + Delta-G solvation = -2800.384889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60155 -36.76953 -35.82684 -33.57836 -32.57801 -30.39719 -29.65943 -28.37092 -26.66343 -24.33588 -23.04568 -22.09571 -21.06949 -20.58875 -19.56698 -16.82894 -16.12486 -15.89175 -15.67513 -15.22356 -15.05615 -14.59938 -14.34330 -14.18697 -13.53757 -13.36482 -12.93720 -12.64048 -12.34295 -12.21998 -11.82558 -11.70771 -11.51168 -11.12748 -11.07050 -10.92815 -10.63605 -10.58851 -10.46730 -10.22942 -9.69391 -9.23935 -9.23380 -8.82017 -8.59580 -8.41734 -7.33033 -6.07514 -4.10520 1.58904 1.65538 3.27655 3.34187 3.37570 3.90294 4.21959 4.40991 4.43434 4.72561 4.78407 5.02880 5.20046 5.25496 5.28908 5.34111 5.38822 5.48190 5.62395 5.65755 5.78224 5.85050 5.98624 6.06809 6.12608 6.15401 6.22863 6.25771 6.34557 6.56992 6.70243 6.74738 6.76542 6.98360 7.03919 7.28830 7.32484 7.52371 7.66833 7.76171 7.94710 8.31924 8.95515 9.53816 11.03877 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016438 B = 0.005500 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.987984 B = 5089.241466 C = 6513.874643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.057 3.943 11 N -0.477 5.477 12 C 0.058 3.942 13 C -0.051 4.051 14 H 0.090 0.910 15 C -0.103 4.103 16 C 0.057 3.943 17 N -0.854 5.854 18 C -0.145 4.145 19 C -0.078 4.078 20 C -0.161 4.161 21 C -0.094 4.094 22 C -0.145 4.145 23 C 0.115 3.885 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.340 0.660 36 H 0.340 0.660 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.839 -15.336 -4.655 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.068 4.068 11 N -0.188 5.188 12 C -0.068 4.068 13 C -0.070 4.070 14 H 0.108 0.892 15 C -0.142 4.142 16 C -0.074 4.074 17 N -0.383 5.383 18 C -0.148 4.148 19 C -0.097 4.097 20 C -0.180 4.180 21 C -0.113 4.113 22 C -0.166 4.166 23 C 0.014 3.986 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.513 -15.813 -3.869 16.349 hybrid contribution 0.610 2.069 -0.697 2.267 sum 2.123 -13.744 -4.567 14.638 Atomic orbital electron populations 1.69966 1.06057 1.26732 1.50444 1.24985 0.94850 0.99258 0.95102 0.86568 0.79878 0.83295 0.78125 1.20645 1.21123 1.19796 1.21126 0.93035 0.90789 1.51237 0.92627 1.19167 0.93921 0.90320 0.97911 1.22592 0.97379 0.87169 0.99661 1.60601 1.12502 1.02666 1.43079 1.23222 0.96695 0.94061 0.92807 1.20862 0.94444 0.95616 0.96087 0.89241 1.21549 0.95940 1.02245 0.94436 1.21861 0.97291 0.98190 0.90018 1.58763 1.08216 1.67543 1.03766 1.20451 0.96870 0.95614 1.01835 1.20296 0.94394 0.95772 0.99217 1.20858 0.95970 0.99350 1.01842 1.20815 0.99311 0.92890 0.98238 1.20506 0.93171 0.98882 1.04081 1.19905 0.91495 0.93077 0.94080 0.92906 0.96406 0.95517 0.91217 0.94980 0.88803 0.92063 0.91969 0.90872 0.90963 0.94847 0.84775 0.84850 0.86627 0.86429 0.86226 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.62 4.68 -27.88 -0.13 0.49 16 10 C 0.06 1.21 4.48 -3.82 -0.02 1.19 16 11 N -0.48 -9.09 5.13 -169.21 -0.87 -9.96 16 12 C 0.06 0.98 4.61 -2.60 -0.01 0.97 16 13 C -0.05 -0.71 3.01 -90.68 -0.27 -0.99 16 14 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.10 -1.24 4.88 -26.73 -0.13 -1.37 16 16 C 0.06 0.63 6.62 -3.83 -0.03 0.61 16 17 N -0.85 -8.46 9.62 -10.37 -0.10 -8.56 16 18 C -0.14 -2.20 5.67 -104.04 -0.59 -2.79 16 19 C -0.08 -1.03 9.78 -39.67 -0.39 -1.42 16 20 C -0.16 -2.01 10.06 -39.53 -0.40 -2.40 16 21 C -0.09 -1.24 10.02 -39.68 -0.40 -1.64 16 22 C -0.15 -2.29 9.54 -39.27 -0.37 -2.66 16 23 C 0.11 1.98 5.94 -83.40 -0.50 1.49 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.47 7.12 -51.93 -0.37 0.10 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.48 7.51 -51.93 -0.39 1.09 16 28 H 0.03 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.06 1.08 7.27 -51.92 -0.38 0.70 16 31 H 0.06 0.79 7.96 -51.93 -0.41 0.37 16 32 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.39 7.86 -51.93 -0.41 -0.01 16 35 H 0.34 2.84 9.08 -39.29 -0.36 2.48 16 36 H 0.34 3.09 8.99 -39.29 -0.35 2.74 16 37 H 0.12 1.28 7.90 -52.49 -0.41 0.86 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.85 7.49 -52.49 -0.39 1.45 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -30.26 324.66 -10.39 -40.65 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.38 Total: 4.15 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -3.64 Total: -21.87 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.23 Total: -44.21 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.26 -10.39 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063128788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.846 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds