Wall clock time and date at job start Mon Mar 30 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99973 * 2 1 4 4 H 1.48507 * 109.47124 * 270.00097 * 3 2 1 5 5 H 1.48507 * 109.47170 * 29.99934 * 3 2 1 6 6 H 1.48503 * 109.47279 * 149.99912 * 3 2 1 7 7 C 1.37875 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99828 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46896 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.46952 * 174.77111 * 10 9 7 12 12 C 1.47910 * 111.00228 * 55.83262 * 11 10 9 13 13 C 1.54270 * 102.79496 * 148.74861 * 12 11 10 14 14 H 1.08998 * 110.15707 * 93.10415 * 13 12 11 15 15 C 1.52999 * 111.22539 * 216.35635 * 13 12 11 16 16 C 1.53000 * 109.47171 * 288.33444 * 15 13 12 17 17 N 1.46898 * 109.47295 * 185.07938 * 16 15 13 18 18 C 1.51570 * 102.94677 * 334.98251 * 13 12 11 19 19 C 1.37919 * 131.56247 * 195.49015 * 18 13 12 20 20 C 1.38309 * 120.07750 * 179.30043 * 19 18 13 21 21 C 1.38305 * 119.88630 * 0.03136 * 20 19 18 22 22 C 1.37906 * 120.26582 * 0.13400 * 21 20 19 23 23 C 1.38968 * 107.95858 * 15.38771 * 18 13 12 24 24 H 0.96999 * 119.99940 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47080 * 60.00605 * 9 7 2 26 26 H 1.08997 * 109.47694 * 300.00263 * 9 7 2 27 27 H 1.08999 * 109.46870 * 54.77062 * 10 9 7 28 28 H 1.09004 * 109.47302 * 294.76949 * 10 9 7 29 29 H 1.09002 * 110.78213 * 267.47107 * 12 11 10 30 30 H 1.09008 * 110.78334 * 30.71495 * 12 11 10 31 31 H 1.08999 * 109.47093 * 48.33002 * 15 13 12 32 32 H 1.08997 * 109.47022 * 168.33163 * 15 13 12 33 33 H 1.09000 * 109.47031 * 305.07718 * 16 15 13 34 34 H 1.09004 * 109.47407 * 65.07726 * 16 15 13 35 35 H 1.00899 * 111.00479 * 179.97438 * 17 16 15 36 36 H 1.00900 * 111.00170 * 303.95364 * 17 16 15 37 37 H 1.07994 * 119.96012 * 359.33161 * 19 18 13 38 38 H 1.07998 * 120.05380 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.86260 * 180.16149 * 21 20 19 40 40 H 1.07997 * 119.90298 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5152 -4.9305 0.1257 12 6 0.5018 -5.0674 -0.9430 13 6 0.4495 -6.5923 -1.1708 14 1 -0.3356 -7.0367 -0.5592 15 6 0.2399 -6.9245 -2.6495 16 6 -1.1938 -6.5740 -3.0527 17 7 -1.4323 -7.0044 -4.4369 18 6 1.8169 -7.0522 -0.7059 19 6 2.4999 -8.2344 -0.9012 20 6 3.7666 -8.3989 -0.3707 21 6 4.3472 -7.3759 0.3567 22 6 3.6672 -6.1931 0.5578 23 6 2.3869 -6.0227 0.0332 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.9320 -3.5530 0.8389 28 1 2.8088 -3.6585 -0.9337 29 1 -0.4643 -4.6874 -0.6108 30 1 0.8251 -4.5570 -1.8503 31 1 0.9389 -6.3469 -3.2543 32 1 0.4129 -7.9885 -2.8109 33 1 -1.8926 -7.0825 -2.3886 34 1 -1.3394 -5.4964 -2.9771 35 1 -2.3733 -6.7842 -4.7270 36 1 -0.7554 -6.5964 -5.0642 37 1 2.0453 -9.0324 -1.4694 38 1 4.3012 -9.3246 -0.5242 39 1 5.3374 -7.5038 0.7686 40 1 4.1260 -5.3984 1.1271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063128788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:07 Heat of formation + Delta-G solvation = -0.266133 kcal Electronic energy + Delta-G solvation = -19249.808471 eV Core-core repulsion = 16448.579443 eV Total energy + Delta-G solvation = -2801.229028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.84546 -37.95647 -36.97172 -35.35999 -33.99831 -32.02048 -30.70816 -29.79352 -28.02601 -26.10808 -24.23205 -23.42623 -22.31867 -21.88939 -20.94378 -18.69202 -17.58344 -16.94242 -16.81848 -16.48583 -16.31540 -16.28697 -15.81403 -15.23929 -14.80991 -14.62551 -14.34770 -14.10185 -13.76763 -13.56729 -13.29472 -13.10897 -12.79823 -12.69231 -12.53561 -12.46568 -12.15133 -11.95660 -11.76819 -11.61587 -11.51904 -11.33824 -10.75294 -10.57293 -9.69008 -9.64945 -8.64094 -8.25453 -6.37560 0.48606 0.51692 1.37886 1.39270 1.50609 2.36316 2.72593 3.00045 3.08197 3.45107 3.55490 3.70132 4.01591 4.09587 4.22269 4.27042 4.32227 4.35818 4.39342 4.48837 4.51073 4.65456 4.69441 4.79504 4.83008 4.89228 4.92616 5.04340 5.18733 5.26722 5.37140 5.40297 5.55461 5.60231 5.66787 5.73065 5.87607 6.04019 6.18275 6.20107 6.36687 6.56708 6.77138 7.31933 8.86530 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016438 B = 0.005500 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.987984 B = 5089.241466 C = 6513.874643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.077 3.923 11 N -0.492 5.492 12 C 0.057 3.943 13 C -0.039 4.039 14 H 0.097 0.903 15 C -0.091 4.091 16 C 0.060 3.940 17 N -0.854 5.854 18 C -0.150 4.150 19 C -0.079 4.079 20 C -0.148 4.148 21 C -0.094 4.094 22 C -0.162 4.162 23 C 0.074 3.926 24 H 0.265 0.735 25 H -0.001 1.001 26 H -0.005 1.005 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.018 0.982 35 H 0.350 0.650 36 H 0.344 0.656 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.286 -17.137 -5.340 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.048 4.048 11 N -0.205 5.205 12 C -0.069 4.069 13 C -0.058 4.058 14 H 0.115 0.885 15 C -0.130 4.130 16 C -0.071 4.071 17 N -0.384 5.384 18 C -0.153 4.153 19 C -0.098 4.098 20 C -0.167 4.167 21 C -0.112 4.112 22 C -0.183 4.183 23 C -0.025 4.025 24 H 0.074 0.926 25 H 0.017 0.983 26 H 0.013 0.987 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.037 0.963 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.167 0.833 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.969 -17.645 -4.562 18.466 hybrid contribution 0.184 2.520 -0.488 2.574 sum 3.153 -15.125 -5.050 16.255 Atomic orbital electron populations 1.70097 1.07784 1.27937 1.51092 1.25938 0.95762 1.03272 0.94357 0.85421 0.78657 0.78231 0.78593 1.19611 1.20554 1.18774 1.21541 0.93499 0.92040 1.51464 0.92210 1.18947 0.94017 0.91830 0.95347 1.22159 0.96080 0.87455 0.99142 1.60593 1.13281 1.02172 1.44478 1.23181 0.95503 0.96526 0.91656 1.20787 0.94490 0.92918 0.97649 0.88509 1.21436 0.96193 1.02708 0.92628 1.21782 0.96919 0.97386 0.90985 1.58757 1.09087 1.67372 1.03180 1.20659 0.97101 0.96004 1.01492 1.20674 0.94646 0.95475 0.98982 1.21347 0.95503 1.00168 0.99655 1.21180 1.00317 0.91895 0.97829 1.20709 0.93051 1.00099 1.04398 1.20096 0.92617 0.93058 0.96695 0.92611 0.98292 0.98693 0.91599 0.95444 0.90161 0.93548 0.92881 0.89518 0.90408 0.96324 0.83719 0.84336 0.83818 0.82751 0.83342 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.55 -31.56 9.11 25.60 0.23 -31.32 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.04 1.95 4.68 29.85 0.14 2.09 16 10 C 0.08 3.48 4.48 86.31 0.39 3.87 16 11 N -0.49 -19.70 5.13 -689.26 -3.54 -23.24 16 12 C 0.06 2.05 4.61 86.54 0.40 2.45 16 13 C -0.04 -1.09 3.01 -10.83 -0.03 -1.12 16 14 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 15 C -0.09 -2.09 4.88 30.59 0.15 -1.94 16 16 C 0.06 1.30 6.62 86.30 0.57 1.87 16 17 N -0.85 -15.79 9.62 -186.72 -1.80 -17.59 16 18 C -0.15 -4.38 5.67 -19.49 -0.11 -4.49 16 19 C -0.08 -1.84 9.78 22.21 0.22 -1.62 16 20 C -0.15 -3.09 10.06 22.30 0.22 -2.87 16 21 C -0.09 -2.23 10.02 22.21 0.22 -2.00 16 22 C -0.16 -5.02 9.54 22.47 0.21 -4.81 16 23 C 0.07 2.58 5.94 38.29 0.23 2.81 16 24 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 25 H 0.00 -0.07 7.12 -2.39 -0.02 -0.09 16 26 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.07 2.95 7.51 -2.39 -0.02 2.93 16 28 H 0.03 1.23 8.12 -2.38 -0.02 1.21 16 29 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.05 1.75 7.27 -2.38 -0.02 1.73 16 31 H 0.05 1.32 7.96 -2.39 -0.02 1.30 16 32 H 0.09 1.78 7.86 -2.39 -0.02 1.76 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.02 0.45 7.86 -2.39 -0.02 0.43 16 35 H 0.35 5.40 9.08 -89.70 -0.81 4.59 16 36 H 0.34 5.87 8.99 -89.69 -0.81 5.07 16 37 H 0.14 2.52 7.90 -2.91 -0.02 2.50 16 38 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.11 3.54 7.49 -2.91 -0.02 3.52 16 Total: -1.00 -66.71 324.66 -0.31 -67.03 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.59 Total: 20.10 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 3.30 Total: -36.33 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -5.05 Total: -97.09 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -66.71 -0.31 -67.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063128788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.759 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds