Wall clock time and date at job start Mon Mar 30 2020 06:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.47907 * 111.00277 * 189.84422 * 11 10 9 13 13 C 1.54600 * 102.62671 * 265.49059 * 12 11 10 14 14 H 1.08998 * 110.89542 * 216.05636 * 13 12 11 15 15 C 1.53003 * 110.73625 * 92.80205 * 13 12 11 16 16 C 1.53009 * 109.46751 * 180.12824 * 15 13 12 17 17 N 1.46896 * 109.46810 * 179.97438 * 16 15 13 18 18 C 1.51567 * 102.83601 * 334.46694 * 13 12 11 19 19 C 1.37928 * 131.56617 * 196.34622 * 18 13 12 20 20 C 1.38299 * 120.08418 * 179.28204 * 19 18 13 21 21 C 1.38303 * 119.88193 * 359.97438 * 20 19 18 22 22 C 1.37906 * 120.26727 * 0.12419 * 21 20 19 23 23 C 1.38966 * 107.95381 * 15.93301 * 18 13 12 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 28 28 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 29 29 H 1.08998 * 110.77681 * 23.77619 * 12 11 10 30 30 H 1.08999 * 110.77928 * 147.20668 * 12 11 10 31 31 H 1.08996 * 109.47188 * 300.12860 * 15 13 12 32 32 H 1.08998 * 109.47037 * 60.13385 * 15 13 12 33 33 H 1.08996 * 109.47304 * 299.99965 * 16 15 13 34 34 H 1.09005 * 109.46640 * 60.00223 * 16 15 13 35 35 H 1.00901 * 111.00142 * 179.97438 * 17 16 15 36 36 H 1.00891 * 111.00456 * 303.95874 * 17 16 15 37 37 H 1.08002 * 119.95421 * 359.28245 * 19 18 13 38 38 H 1.08002 * 120.05522 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.86679 * 180.14406 * 21 20 19 40 40 H 1.08001 * 119.90313 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4244 -6.0723 0.2578 13 6 2.7634 -6.5429 -1.1752 14 1 2.8606 -7.6278 -1.2154 15 6 4.0404 -5.8675 -1.6794 16 6 4.3466 -6.3507 -3.0985 17 7 5.5723 -5.7018 -3.5827 18 6 1.5609 -6.0818 -1.9744 19 6 1.1048 -6.4347 -3.2273 20 6 -0.0506 -5.8649 -3.7303 21 6 -0.7487 -4.9407 -2.9745 22 6 -0.2959 -4.5828 -1.7220 23 6 0.8701 -5.1497 -1.2095 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 2.8721 -3.6081 -0.8798 28 1 2.8721 -3.6002 0.9002 29 1 3.3230 -5.7431 0.7795 30 1 1.9198 -6.8617 0.8149 31 1 3.9015 -4.7865 -1.6856 32 1 4.8708 -6.1234 -1.0213 33 1 4.4855 -7.4317 -3.0922 34 1 3.5161 -6.0948 -3.7565 35 1 5.7964 -6.0049 -4.5187 36 1 5.4918 -4.6971 -3.5373 37 1 1.6507 -7.1569 -3.8163 38 1 -0.4076 -6.1419 -4.7113 39 1 -1.6522 -4.4976 -3.3666 40 1 -0.8458 -3.8608 -1.1367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063128789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:10 Heat of formation + Delta-G solvation = 27.958613 kcal Electronic energy + Delta-G solvation = -19801.861372 eV Core-core repulsion = 17001.856261 eV Total energy + Delta-G solvation = -2800.005111 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73706 -36.65127 -35.59893 -33.53645 -32.20967 -30.04835 -29.53109 -28.80940 -26.58209 -24.24761 -22.77532 -21.95663 -21.51989 -20.37335 -19.60708 -16.55354 -16.21669 -15.79604 -15.69825 -15.16178 -14.97296 -14.53970 -14.36827 -13.94051 -13.56140 -13.09712 -12.81132 -12.47601 -12.29365 -12.03415 -11.90275 -11.73480 -11.39046 -11.13775 -11.09985 -10.91305 -10.85409 -10.53398 -10.29248 -10.01928 -9.47435 -9.14382 -8.83750 -8.72489 -8.45335 -8.30447 -7.41294 -6.01328 -4.03569 1.68293 1.77350 3.30670 3.37111 3.40180 4.02382 4.21234 4.40609 4.47013 4.74131 4.88308 5.14642 5.22246 5.33314 5.35196 5.36710 5.44528 5.53984 5.62147 5.71812 5.84714 5.97271 5.98525 6.00737 6.13378 6.21748 6.26952 6.39953 6.47829 6.72305 6.86079 6.87426 6.92627 7.03570 7.15738 7.33699 7.41579 7.70312 7.73062 7.88566 8.04268 8.39941 9.02739 9.59863 11.10104 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.006272 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.071609 B = 4462.995618 C = 5070.569735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.022 3.978 10 C 0.064 3.936 11 N -0.495 5.495 12 C 0.052 3.948 13 C -0.072 4.072 14 H 0.084 0.916 15 C -0.111 4.111 16 C 0.060 3.940 17 N -0.854 5.854 18 C -0.143 4.143 19 C -0.095 4.095 20 C -0.146 4.146 21 C -0.105 4.105 22 C -0.101 4.101 23 C 0.116 3.884 24 H 0.260 0.740 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.338 0.662 36 H 0.343 0.657 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -13.917 -6.511 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.060 4.060 11 N -0.212 5.212 12 C -0.076 4.076 13 C -0.092 4.092 14 H 0.102 0.898 15 C -0.149 4.149 16 C -0.070 4.070 17 N -0.383 5.383 18 C -0.146 4.146 19 C -0.114 4.114 20 C -0.164 4.164 21 C -0.124 4.124 22 C -0.120 4.120 23 C 0.019 3.981 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.930 -14.096 -5.409 15.602 hybrid contribution 0.317 1.350 -1.363 1.944 sum 4.247 -12.747 -6.772 15.046 Atomic orbital electron populations 1.69961 1.05992 1.26584 1.50577 1.24963 0.94823 0.99103 0.95260 0.86615 0.79890 0.83552 0.78074 1.20723 1.21157 1.19865 1.21142 0.92921 0.90957 1.51010 0.92840 1.19221 0.94111 0.90002 0.98189 1.22575 0.96619 0.87282 0.99506 1.60289 1.28011 1.03993 1.28920 1.23202 0.95954 0.93403 0.95000 1.21267 0.92535 1.00396 0.95048 0.89817 1.21683 0.95954 1.01175 0.96040 1.21839 0.90478 0.98698 0.95998 1.58739 1.37356 1.12473 1.29734 1.20907 0.96754 1.01888 0.95064 1.20245 0.96534 1.00242 0.94365 1.20909 0.96458 0.99186 0.99883 1.20911 0.99870 0.97481 0.94138 1.20786 0.95073 1.00130 0.96057 1.19560 0.94165 0.95306 0.89084 0.92986 0.95794 0.95659 0.95086 0.91556 0.89896 0.89922 0.91092 0.90886 0.91542 0.94864 0.85047 0.84497 0.87114 0.86521 0.86023 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.57 4.83 -27.88 -0.13 0.44 16 10 C 0.06 1.36 4.53 -3.83 -0.02 1.34 16 11 N -0.50 -9.32 5.06 -169.02 -0.86 -10.17 16 12 C 0.05 0.76 6.56 -2.43 -0.02 0.75 16 13 C -0.07 -0.98 3.07 -90.50 -0.28 -1.26 16 14 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.11 -1.47 4.83 -26.72 -0.13 -1.60 16 16 C 0.06 0.71 6.59 -3.82 -0.03 0.68 16 17 N -0.85 -9.51 9.62 -10.37 -0.10 -9.61 16 18 C -0.14 -2.25 5.18 -104.04 -0.54 -2.79 16 19 C -0.10 -1.34 8.75 -39.67 -0.35 -1.69 16 20 C -0.15 -2.04 10.06 -39.54 -0.40 -2.44 16 21 C -0.11 -1.66 10.02 -39.68 -0.40 -2.06 16 22 C -0.10 -1.88 8.54 -39.27 -0.34 -2.22 16 23 C 0.12 2.14 5.28 -83.40 -0.44 1.70 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.69 5.58 -51.93 -0.29 0.40 16 27 H 0.03 0.66 5.73 -51.93 -0.30 0.36 16 28 H 0.07 1.37 7.85 -51.93 -0.41 0.96 16 29 H 0.08 1.14 7.37 -51.93 -0.38 0.75 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.12 5.72 -51.93 -0.30 0.82 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.41 6.03 -51.93 -0.31 0.10 16 35 H 0.34 3.07 9.08 -39.29 -0.36 2.71 16 36 H 0.34 3.87 8.99 -39.30 -0.35 3.52 16 37 H 0.11 1.30 7.61 -52.49 -0.40 0.90 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.13 2.69 7.18 -52.49 -0.38 2.31 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -30.57 315.65 -9.93 -40.50 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.97 Total: 6.40 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -3.47 Total: -22.56 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.22 Total: -45.72 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.57 -9.93 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063128789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.455 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds