Wall clock time and date at job start Mon Mar 30 2020 06:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.47907 * 111.00277 * 189.84422 * 11 10 9 13 13 C 1.54600 * 102.62671 * 265.49059 * 12 11 10 14 14 H 1.08998 * 110.89542 * 216.05636 * 13 12 11 15 15 C 1.53003 * 110.73625 * 92.80205 * 13 12 11 16 16 C 1.53009 * 109.46751 * 180.12824 * 15 13 12 17 17 N 1.46896 * 109.46810 * 179.97438 * 16 15 13 18 18 C 1.51567 * 102.83601 * 334.46694 * 13 12 11 19 19 C 1.37928 * 131.56617 * 196.34622 * 18 13 12 20 20 C 1.38299 * 120.08418 * 179.28204 * 19 18 13 21 21 C 1.38303 * 119.88193 * 359.97438 * 20 19 18 22 22 C 1.37906 * 120.26727 * 0.12419 * 21 20 19 23 23 C 1.38966 * 107.95381 * 15.93301 * 18 13 12 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 28 28 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 29 29 H 1.08998 * 110.77681 * 23.77619 * 12 11 10 30 30 H 1.08999 * 110.77928 * 147.20668 * 12 11 10 31 31 H 1.08996 * 109.47188 * 300.12860 * 15 13 12 32 32 H 1.08998 * 109.47037 * 60.13385 * 15 13 12 33 33 H 1.08996 * 109.47304 * 299.99965 * 16 15 13 34 34 H 1.09005 * 109.46640 * 60.00223 * 16 15 13 35 35 H 1.00901 * 111.00142 * 179.97438 * 17 16 15 36 36 H 1.00891 * 111.00456 * 303.95874 * 17 16 15 37 37 H 1.08002 * 119.95421 * 359.28245 * 19 18 13 38 38 H 1.08002 * 120.05522 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.86679 * 180.14406 * 21 20 19 40 40 H 1.08001 * 119.90313 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4244 -6.0723 0.2578 13 6 2.7634 -6.5429 -1.1752 14 1 2.8606 -7.6278 -1.2154 15 6 4.0404 -5.8675 -1.6794 16 6 4.3466 -6.3507 -3.0985 17 7 5.5723 -5.7018 -3.5827 18 6 1.5609 -6.0818 -1.9744 19 6 1.1048 -6.4347 -3.2273 20 6 -0.0506 -5.8649 -3.7303 21 6 -0.7487 -4.9407 -2.9745 22 6 -0.2959 -4.5828 -1.7220 23 6 0.8701 -5.1497 -1.2095 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 2.8721 -3.6081 -0.8798 28 1 2.8721 -3.6002 0.9002 29 1 3.3230 -5.7431 0.7795 30 1 1.9198 -6.8617 0.8149 31 1 3.9015 -4.7865 -1.6856 32 1 4.8708 -6.1234 -1.0213 33 1 4.4855 -7.4317 -3.0922 34 1 3.5161 -6.0948 -3.7565 35 1 5.7964 -6.0049 -4.5187 36 1 5.4918 -4.6971 -3.5373 37 1 1.6507 -7.1569 -3.8163 38 1 -0.4076 -6.1419 -4.7113 39 1 -1.6522 -4.4976 -3.3666 40 1 -0.8458 -3.8608 -1.1367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063128789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:10 Heat of formation + Delta-G solvation = 7.562752 kcal Electronic energy + Delta-G solvation = -19802.745803 eV Core-core repulsion = 17001.856261 eV Total energy + Delta-G solvation = -2800.889542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.00441 -37.89236 -36.72890 -35.39548 -33.70359 -31.69664 -30.70159 -30.17278 -27.99432 -26.01956 -23.94291 -23.24971 -23.02157 -21.65908 -20.96019 -18.54370 -17.59302 -17.00855 -16.82337 -16.44003 -16.31039 -16.13263 -15.76511 -15.22592 -14.78887 -14.63085 -14.13518 -13.98309 -13.70016 -13.42055 -13.26562 -13.09196 -12.91059 -12.71766 -12.55621 -12.38413 -12.25234 -12.03174 -11.79726 -11.52018 -11.27899 -11.25237 -10.57986 -10.16838 -9.73627 -9.53904 -8.76643 -8.21995 -6.33502 0.44368 0.51083 1.37359 1.38973 1.50124 2.37395 2.75482 2.96376 3.11467 3.43748 3.64017 3.85109 4.08516 4.10474 4.20244 4.24768 4.37686 4.43086 4.45915 4.52936 4.60446 4.68763 4.75881 4.81337 4.86025 4.99373 5.00498 5.09641 5.20004 5.31969 5.42602 5.51458 5.61166 5.63009 5.64238 5.78833 5.93992 6.10635 6.18693 6.23662 6.45299 6.55953 6.82716 7.35223 8.90183 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.006272 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.071609 B = 4462.995618 C = 5070.569735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.031 3.969 10 C 0.085 3.915 11 N -0.515 5.515 12 C 0.048 3.952 13 C -0.063 4.063 14 H 0.115 0.885 15 C -0.105 4.105 16 C 0.065 3.935 17 N -0.859 5.859 18 C -0.139 4.139 19 C -0.091 4.091 20 C -0.135 4.135 21 C -0.114 4.114 22 C -0.133 4.133 23 C 0.080 3.920 24 H 0.263 0.737 25 H -0.014 1.014 26 H 0.003 0.997 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.028 0.972 35 H 0.350 0.650 36 H 0.340 0.660 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 -15.538 -8.158 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.040 4.040 11 N -0.232 5.232 12 C -0.078 4.078 13 C -0.082 4.082 14 H 0.133 0.867 15 C -0.143 4.143 16 C -0.065 4.065 17 N -0.389 5.389 18 C -0.142 4.142 19 C -0.109 4.109 20 C -0.153 4.153 21 C -0.132 4.132 22 C -0.153 4.153 23 C -0.016 4.016 24 H 0.072 0.928 25 H 0.004 0.996 26 H 0.022 0.978 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.154 0.846 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.831 -15.746 -7.066 18.217 hybrid contribution -0.335 1.799 -0.887 2.034 sum 5.496 -13.946 -7.953 16.969 Atomic orbital electron populations 1.70111 1.07820 1.27733 1.51342 1.25936 0.95727 1.03227 0.94573 0.85461 0.78751 0.78420 0.78515 1.19772 1.20614 1.18604 1.21571 0.93413 0.92180 1.51057 0.92258 1.19023 0.94338 0.91952 0.95279 1.22149 0.95107 0.87339 0.99414 1.60165 1.28902 1.04050 1.30085 1.23364 0.95731 0.92256 0.96463 1.21268 0.91597 1.01991 0.93374 0.86744 1.21603 0.95992 0.99135 0.97524 1.21793 0.90496 0.99619 0.94627 1.58739 1.37052 1.12340 1.30788 1.21197 0.96907 1.00637 0.95451 1.20685 0.96361 1.00105 0.93766 1.21347 0.95754 0.97379 1.00832 1.21140 1.00761 0.98160 0.93164 1.20757 0.96130 1.00901 0.97542 1.19726 0.94807 0.97178 0.89898 0.92775 0.99555 0.97840 0.95246 0.91314 0.89034 0.88460 0.94214 0.90110 0.89741 0.95380 0.83651 0.84841 0.83544 0.82783 0.84622 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 2 C 0.00 0.20 5.46 84.65 0.46 0.67 16 3 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.75 4.83 29.85 0.14 1.89 16 10 C 0.08 3.75 4.53 86.31 0.39 4.14 16 11 N -0.51 -19.99 5.06 -688.65 -3.48 -23.47 16 12 C 0.05 1.37 6.56 86.65 0.57 1.94 16 13 C -0.06 -1.54 3.07 -10.72 -0.03 -1.57 16 14 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.10 -2.55 4.83 30.60 0.15 -2.40 16 16 C 0.07 1.32 6.59 86.31 0.57 1.89 16 17 N -0.86 -16.99 9.62 -186.71 -1.80 -18.79 16 18 C -0.14 -4.14 5.18 -19.49 -0.10 -4.24 16 19 C -0.09 -2.27 8.75 22.21 0.19 -2.07 16 20 C -0.13 -3.42 10.06 22.30 0.22 -3.20 16 21 C -0.11 -3.60 10.02 22.21 0.22 -3.38 16 22 C -0.13 -5.31 8.54 22.47 0.19 -5.12 16 23 C 0.08 3.04 5.28 38.29 0.20 3.25 16 24 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 25 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H 0.00 0.20 5.58 -2.38 -0.01 0.18 16 27 H 0.03 1.30 5.73 -2.39 -0.01 1.29 16 28 H 0.07 2.93 7.85 -2.38 -0.02 2.91 16 29 H 0.09 2.41 7.37 -2.39 -0.02 2.39 16 30 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.04 1.22 5.72 -2.39 -0.01 1.21 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.03 0.60 6.03 -2.38 -0.01 0.59 16 35 H 0.35 5.39 9.08 -89.69 -0.81 4.57 16 36 H 0.34 7.14 8.99 -89.70 -0.81 6.33 16 37 H 0.15 2.65 7.61 -2.91 -0.02 2.62 16 38 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 40 H 0.09 4.28 7.18 -2.91 -0.02 4.26 16 Total: -1.00 -69.38 315.65 -0.12 -69.50 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.57 Total: 23.10 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 3.42 Total: -39.77 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -5.00 Total: -99.81 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -69.38 -0.12 -69.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063128789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.065 kcal (2) G-P(sol) polarization free energy of solvation -69.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds