Wall clock time and date at job start Mon Mar 30 2020 07:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47020 * 2 1 4 4 H 1.09000 * 109.47166 * 58.23058 * 3 2 1 5 5 C 1.50700 * 109.47137 * 178.23142 * 3 2 1 6 6 H 1.07999 * 119.99766 * 114.97359 * 5 3 2 7 7 C 1.37880 * 119.99952 * 294.97264 * 5 3 2 8 8 N 1.31516 * 119.99735 * 167.27485 * 7 5 3 9 9 Si 1.86794 * 120.00077 * 347.28017 * 7 5 3 10 10 H 1.48506 * 109.47132 * 274.89907 * 9 7 5 11 11 H 1.48508 * 109.47294 * 34.89606 * 9 7 5 12 12 H 1.48501 * 109.47227 * 154.89560 * 9 7 5 13 13 N 1.46901 * 109.46942 * 298.22925 * 3 2 1 14 14 C 1.46422 * 111.00023 * 321.25152 * 13 3 2 15 15 C 1.53389 * 108.64667 * 287.83889 * 14 13 3 16 16 C 1.53038 * 107.93674 * 291.71550 * 15 14 13 17 17 C 1.50816 * 109.68975 * 47.40442 * 16 15 14 18 18 C 1.38613 * 118.05516 * 164.59694 * 17 16 15 19 19 C 1.38623 * 120.43083 * 179.34105 * 18 17 16 20 20 N 1.40003 * 120.13230 * 180.02562 * 19 18 17 21 21 C 1.38886 * 119.73238 * 0.03188 * 19 18 17 22 22 C 1.37787 * 119.86880 * 0.12954 * 21 19 18 23 23 C 1.38337 * 122.01289 * 344.23027 * 17 16 15 24 24 H 1.09000 * 109.47213 * 184.30913 * 1 2 3 25 25 H 1.09000 * 109.47973 * 304.31455 * 1 2 3 26 26 H 1.09005 * 109.47392 * 64.31183 * 1 2 3 27 27 H 1.08999 * 109.47193 * 240.00026 * 2 1 3 28 28 H 1.09000 * 109.46977 * 119.99652 * 2 1 3 29 29 H 0.97000 * 119.99881 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.61241 * 47.58643 * 14 13 3 31 31 H 1.09007 * 109.60805 * 168.09458 * 14 13 3 32 32 H 1.08999 * 109.76487 * 172.10715 * 15 14 13 33 33 H 1.09005 * 109.81337 * 51.34877 * 15 14 13 34 34 H 1.08999 * 109.43359 * 287.33499 * 16 15 14 35 35 H 1.09000 * 109.42791 * 167.46665 * 16 15 14 36 36 H 1.07996 * 119.78916 * 359.34972 * 18 17 16 37 37 H 0.97003 * 119.99847 * 180.02562 * 20 19 18 38 38 H 0.96996 * 120.00191 * 0.02562 * 20 19 18 39 39 H 1.07993 * 120.06318 * 180.11675 * 21 19 18 40 40 H 1.07998 * 119.73223 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6509 1.9655 0.8737 5 6 3.5463 1.4428 0.0439 6 1 4.1107 1.8291 -0.7920 7 6 4.2038 0.9500 1.1510 8 7 5.4969 0.7159 1.0977 9 14 3.2580 0.6146 2.7265 10 1 3.1600 1.8655 3.5209 11 1 1.8938 0.1326 2.3919 12 1 3.9683 -0.4209 3.5194 13 7 1.5855 2.1225 -1.2203 14 6 1.6404 1.2225 -2.3739 15 6 3.1098 1.0026 -2.7549 16 6 3.6575 2.3228 -3.3021 17 6 3.2746 3.4530 -2.3798 18 6 3.9390 4.6615 -2.5190 19 6 3.6169 5.7374 -1.7064 20 7 4.2916 6.9554 -1.8527 21 6 2.6224 5.6021 -0.7464 22 6 1.9639 4.4001 -0.6053 23 6 2.2875 3.3144 -1.4206 24 1 -0.3633 -1.0248 0.0772 25 1 -0.3635 0.5793 0.8488 26 1 -0.3634 0.4455 -0.9261 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 5.9594 0.3689 1.8765 30 1 1.1828 0.2677 -2.1151 31 1 1.1081 1.6706 -3.2131 32 1 3.1806 0.2290 -3.5195 33 1 3.6791 0.7041 -1.8746 34 1 3.2405 2.5056 -4.2925 35 1 4.7436 2.2636 -3.3718 36 1 4.7125 4.7657 -3.2655 37 1 4.0649 7.7069 -1.2828 38 1 4.9857 7.0478 -2.5240 39 1 2.3659 6.4374 -0.1118 40 1 1.1912 4.2972 0.1422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070194774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:53 Heat of formation + Delta-G solvation = 24.737200 kcal Electronic energy + Delta-G solvation = -20742.569559 eV Core-core repulsion = 17942.424757 eV Total energy + Delta-G solvation = -2800.144802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.54833 -38.81293 -35.80423 -34.36443 -34.22742 -32.76608 -30.77576 -29.27363 -28.65119 -25.55010 -24.29626 -23.69344 -22.89594 -21.51499 -19.95426 -18.90392 -17.92649 -17.66531 -17.23217 -16.34176 -16.05435 -15.21345 -15.14145 -14.96567 -14.53590 -14.32970 -14.26376 -13.81423 -13.61856 -13.39744 -13.32019 -13.10123 -12.99586 -12.53936 -12.46350 -12.24337 -12.14229 -11.73083 -11.35372 -11.28227 -10.99697 -10.90140 -10.75607 -10.47900 -9.39337 -9.19158 -8.19301 -7.77424 -6.14421 0.70303 0.94785 1.35073 1.40836 1.46589 2.41327 3.03796 3.13993 3.21733 3.52639 4.02904 4.14121 4.29762 4.35049 4.44356 4.51563 4.53042 4.64650 4.68333 4.82279 4.84964 4.90370 5.07276 5.10827 5.14694 5.18296 5.25142 5.27319 5.39117 5.48139 5.54456 5.58420 5.64547 5.71776 5.81428 5.94755 6.07041 6.41838 6.52934 6.74442 6.90051 7.02920 7.19187 7.47728 8.95030 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.009123 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.374152 B = 3068.319606 C = 3526.081475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.195 3.805 4 H 0.022 0.978 5 C -0.525 4.525 6 H 0.071 0.929 7 C 0.023 3.977 8 N -0.942 5.942 9 Si 0.904 3.096 10 H -0.286 1.286 11 H -0.216 1.216 12 H -0.297 1.297 13 N -0.489 5.489 14 C 0.057 3.943 15 C -0.179 4.179 16 C -0.067 4.067 17 C -0.081 4.081 18 C -0.200 4.200 19 C 0.187 3.813 20 N -0.874 5.874 21 C -0.194 4.194 22 C -0.093 4.093 23 C 0.081 3.919 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.259 0.741 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.404 0.596 38 H 0.402 0.598 39 H 0.134 0.866 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 6.220 -6.801 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.089 3.911 4 H 0.039 0.961 5 C -0.563 4.563 6 H 0.088 0.912 7 C -0.175 4.175 8 N -0.583 5.583 9 Si 0.730 3.270 10 H -0.213 1.213 11 H -0.139 1.139 12 H -0.224 1.224 13 N -0.206 5.206 14 C -0.070 4.070 15 C -0.218 4.218 16 C -0.104 4.104 17 C -0.084 4.084 18 C -0.224 4.224 19 C 0.083 3.917 20 N -0.416 5.416 21 C -0.217 4.217 22 C -0.113 4.113 23 C -0.017 4.017 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.233 0.767 38 H 0.231 0.769 39 H 0.152 0.848 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.819 6.191 -6.621 11.971 hybrid contribution 1.440 -0.069 0.995 1.752 sum -6.379 6.122 -5.626 10.480 Atomic orbital electron populations 1.21739 0.94767 1.00992 1.02099 1.22204 0.96242 0.97405 1.01323 1.19555 0.92057 0.91069 0.88377 0.96062 1.22120 0.92045 1.38903 1.03242 0.91166 1.25618 0.95180 0.95204 1.01497 1.70096 1.10732 1.46865 1.30601 0.86621 0.82112 0.77559 0.80699 1.21281 1.13875 1.22392 1.59239 1.52621 1.04088 1.04643 1.22279 0.95159 0.97435 0.92137 1.22619 0.99328 0.96905 1.02912 1.20399 0.99985 0.92679 0.97346 1.19858 0.94251 0.95271 0.98993 1.20482 1.04745 0.92959 1.04200 1.17647 0.92564 0.87322 0.94188 1.42261 1.44134 1.10771 1.44429 1.20530 1.00334 0.98717 1.02099 1.20850 0.99683 0.92020 0.98739 1.18266 0.94369 0.91686 0.97333 0.92380 0.93780 0.91504 0.91814 0.93267 0.93256 0.88797 0.90935 0.91064 0.89889 0.89720 0.92453 0.85955 0.76727 0.76930 0.84782 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.37 71.98 0.67 -3.76 16 2 C -0.13 -5.33 4.24 30.59 0.13 -5.20 16 3 C 0.20 8.74 1.41 44.17 0.06 8.80 16 4 H 0.02 1.02 6.92 -2.39 -0.02 1.00 16 5 C -0.52 -28.05 6.21 25.60 0.16 -27.89 16 6 H 0.07 4.11 4.35 -2.91 -0.01 4.10 16 7 C 0.02 1.28 5.38 84.65 0.46 1.74 16 8 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 9 Si 0.90 43.15 25.91 68.60 1.78 44.92 16 10 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.22 -9.19 5.19 99.48 0.52 -8.67 16 12 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 13 N -0.49 -19.67 4.26 -675.80 -2.88 -22.54 16 14 C 0.06 2.02 4.81 86.52 0.42 2.44 16 15 C -0.18 -6.77 5.39 30.74 0.17 -6.61 16 16 C -0.07 -2.42 5.54 29.90 0.17 -2.26 16 17 C -0.08 -3.20 4.72 -19.71 -0.09 -3.29 16 18 C -0.20 -7.20 9.48 22.45 0.21 -6.98 16 19 C 0.19 6.14 6.76 38.08 0.26 6.40 16 20 N -0.87 -20.65 9.11 -51.35 -0.47 -21.12 16 21 C -0.19 -6.67 9.89 22.32 0.22 -6.45 16 22 C -0.09 -3.63 9.57 22.49 0.22 -3.42 16 23 C 0.08 3.36 3.96 38.22 0.15 3.51 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 2.01 6.58 -2.38 -0.02 2.00 16 27 H 0.06 2.50 5.77 -2.39 -0.01 2.49 16 28 H 0.05 2.08 4.49 -2.39 -0.01 2.07 16 29 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.09 3.10 4.36 -2.39 -0.01 3.09 16 31 H 0.07 2.31 8.11 -2.38 -0.02 2.29 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 33 H 0.08 3.95 4.41 -2.38 -0.01 3.94 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.40 7.66 8.85 -92.71 -0.82 6.84 16 38 H 0.40 7.93 8.85 -92.71 -0.82 7.11 16 39 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 40 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -64.68 295.23 1.16 -63.52 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: -0.76 Total: 35.83 kcal Atomic # 6 Polarization: -46.16 SS G_CDS: 3.19 Total: -42.96 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -3.05 Total: -101.30 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.78 Total: 44.92 kcal Total: -64.68 1.16 -63.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070194774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.255 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds