Wall clock time and date at job start Mon Mar 30 2020 06:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99795 * 2 1 4 4 H 1.48497 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47238 * 300.00041 * 3 2 1 6 6 H 1.48503 * 109.47245 * 59.99935 * 3 2 1 7 7 C 1.37869 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00137 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47511 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47273 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46765 * 179.97438 * 11 10 9 13 13 C 1.46416 * 111.00076 * 48.68881 * 12 11 10 14 14 C 1.53371 * 108.68489 * 178.95381 * 13 12 11 15 15 H 1.09002 * 109.81026 * 51.47966 * 14 13 12 16 16 N 1.46897 * 109.77113 * 172.23334 * 14 13 12 17 17 C 1.53045 * 107.94121 * 291.84444 * 14 13 12 18 18 C 1.50800 * 109.65483 * 47.38833 * 17 14 13 19 19 C 1.38617 * 118.12848 * 164.31659 * 18 17 14 20 20 C 1.38049 * 120.48199 * 179.39055 * 19 18 17 21 21 C 1.38320 * 119.88857 * 359.68542 * 20 19 18 22 22 C 1.37804 * 119.95203 * 0.70776 * 21 20 19 23 23 C 1.38378 * 122.00435 * 343.96404 * 18 17 14 24 24 H 0.97001 * 120.00019 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47485 * 59.99360 * 9 7 2 26 26 H 1.09001 * 109.47217 * 299.99629 * 9 7 2 27 27 H 1.09006 * 109.47219 * 60.00154 * 10 9 7 28 28 H 1.08999 * 109.47138 * 300.00146 * 10 9 7 29 29 H 1.08999 * 109.46741 * 60.00451 * 11 10 9 30 30 H 1.08994 * 109.47209 * 300.00202 * 11 10 9 31 31 H 1.09004 * 109.60689 * 59.19528 * 13 12 11 32 32 H 1.08999 * 109.60135 * 298.71368 * 13 12 11 33 33 H 1.00909 * 111.00087 * 178.48838 * 16 14 13 34 34 H 1.00898 * 111.00075 * 302.44121 * 16 14 13 35 35 H 1.08995 * 109.44322 * 287.32688 * 17 14 13 36 36 H 1.09007 * 109.43854 * 167.44075 * 17 14 13 37 37 H 1.07992 * 119.75571 * 359.36495 * 19 18 17 38 38 H 1.08003 * 120.05385 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.01995 * 180.43770 * 21 20 19 40 40 H 1.08001 * 119.78861 * 179.75279 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 3.4626 -5.9159 1.0265 14 6 4.4122 -7.1199 0.9969 15 1 4.7653 -7.2870 -0.0207 16 7 5.5558 -6.8728 1.8852 17 6 3.6348 -8.3455 1.4828 18 6 2.3026 -8.4127 0.7795 19 6 1.5978 -9.6054 0.8273 20 6 0.3676 -9.7170 0.2109 21 6 -0.1711 -8.6306 -0.4544 22 6 0.5274 -7.4441 -0.5130 23 6 1.7736 -7.3263 0.1051 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8535 -5.0451 -0.8886 30 1 0.8540 -5.0446 0.8913 31 1 2.9918 -5.8455 2.0071 32 1 4.0224 -5.0036 0.8208 33 1 6.1809 -7.6648 1.8987 34 1 6.0445 -6.0310 1.6197 35 1 3.4739 -8.2701 2.5582 36 1 4.2063 -9.2476 1.2644 37 1 2.0144 -10.4535 1.3501 38 1 -0.1754 -10.6497 0.2521 39 1 -1.1366 -8.7134 -0.9313 40 1 0.1060 -6.5987 -1.0366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070196679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:58 Heat of formation + Delta-G solvation = 18.127108 kcal Electronic energy + Delta-G solvation = -19230.845607 eV Core-core repulsion = 16430.414170 eV Total energy + Delta-G solvation = -2800.431437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56250 -37.16067 -35.79874 -33.60303 -32.11588 -31.39570 -29.56939 -28.23331 -26.82566 -24.92760 -23.13875 -22.41311 -21.33518 -19.89478 -19.30272 -17.06757 -16.46308 -16.13119 -15.96959 -15.14607 -14.83162 -14.63019 -14.41742 -13.98500 -13.55246 -13.47942 -13.06832 -12.97907 -12.70833 -12.27250 -11.72988 -11.68265 -11.50269 -11.43383 -10.96641 -10.89288 -10.63641 -10.53182 -10.39914 -9.79326 -9.57101 -9.41538 -9.08264 -8.87857 -8.65771 -8.36802 -7.49689 -6.01729 -4.04166 1.45333 1.52529 3.30237 3.37768 3.41697 3.66987 3.96800 4.38230 4.45849 4.64534 4.82453 4.95585 5.06618 5.16188 5.31197 5.34437 5.43874 5.50483 5.59675 5.61934 5.73012 5.78429 5.88813 5.90075 6.02523 6.12554 6.18093 6.30602 6.48834 6.58807 6.64940 6.70139 6.87623 6.99238 7.03586 7.22863 7.31331 7.51527 7.64087 7.77303 7.97477 8.39960 9.02680 9.60164 11.09729 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024657 B = 0.004484 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.323015 B = 6242.981507 C = 7260.033563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.113 4.113 11 C 0.058 3.942 12 N -0.494 5.494 13 C 0.062 3.938 14 C 0.088 3.912 15 H 0.048 0.952 16 N -0.844 5.844 17 C -0.068 4.068 18 C -0.132 4.132 19 C -0.093 4.093 20 C -0.159 4.159 21 C -0.095 4.095 22 C -0.162 4.162 23 C 0.138 3.862 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.342 0.658 34 H 0.346 0.654 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 -18.943 1.554 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.151 4.151 11 C -0.066 4.066 12 N -0.206 5.206 13 C -0.064 4.064 14 C -0.024 4.024 15 H 0.066 0.934 16 N -0.375 5.375 17 C -0.105 4.105 18 C -0.136 4.136 19 C -0.112 4.112 20 C -0.179 4.179 21 C -0.113 4.113 22 C -0.182 4.182 23 C 0.037 3.963 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.089 -18.650 1.701 19.407 hybrid contribution 0.592 0.824 -0.333 1.068 sum 5.681 -17.827 1.368 18.760 Atomic orbital electron populations 1.69975 1.06061 1.26517 1.50907 1.25019 0.94842 0.99274 0.95301 0.86542 0.80117 0.83794 0.77590 1.19733 1.20998 1.21008 1.21247 0.93042 0.90944 1.50507 0.92633 1.19063 0.93930 0.91186 0.97316 1.21836 0.99536 0.92746 1.01011 1.22528 0.93516 0.89129 1.01454 1.58124 1.15054 1.01534 1.45925 1.22143 0.92731 0.98567 0.92981 1.21392 0.91474 0.95034 0.94468 0.93409 1.58612 1.13068 1.08648 1.57160 1.20490 0.92301 0.97528 1.00205 1.19412 0.97939 0.94082 1.02172 1.20842 0.94893 0.96353 0.99068 1.20898 0.96645 0.98817 1.01521 1.20925 0.99298 0.92749 0.98376 1.21236 0.94462 0.99190 1.03343 1.18758 0.91989 0.90711 0.94793 0.93039 0.96450 0.96602 0.92891 0.92420 0.90084 0.93780 0.92849 0.88837 0.84560 0.84079 0.90011 0.91225 0.86494 0.86531 0.86210 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.64 9.11 -34.45 -0.31 -14.95 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.31 4.51 -26.73 -0.12 -2.43 16 11 C 0.06 1.02 4.33 -3.82 -0.02 1.01 16 12 N -0.49 -7.87 4.65 -171.30 -0.80 -8.67 16 13 C 0.06 0.91 4.30 -3.90 -0.02 0.90 16 14 C 0.09 1.06 3.47 -67.50 -0.23 0.82 16 15 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 16 N -0.84 -8.45 9.26 -4.48 -0.04 -8.49 16 17 C -0.07 -0.78 5.40 -27.81 -0.15 -0.93 16 18 C -0.13 -1.77 5.74 -104.38 -0.60 -2.37 16 19 C -0.09 -1.10 9.63 -39.51 -0.38 -1.48 16 20 C -0.16 -1.84 10.05 -39.62 -0.40 -2.24 16 21 C -0.09 -1.18 10.04 -39.71 -0.40 -1.58 16 22 C -0.16 -2.33 9.03 -39.23 -0.35 -2.69 16 23 C 0.14 2.09 5.81 -83.85 -0.49 1.60 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.05 6.35 -51.93 -0.33 0.73 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.40 6.35 -51.93 -0.33 1.07 16 30 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 31 H 0.05 0.84 8.11 -51.93 -0.42 0.42 16 32 H 0.09 1.40 6.28 -51.93 -0.33 1.08 16 33 H 0.34 2.69 9.04 -39.29 -0.36 2.34 16 34 H 0.35 3.21 9.02 -39.29 -0.35 2.85 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.13 1.84 5.98 -52.49 -0.31 1.53 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -30.53 318.23 -10.23 -40.76 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.20 Total: 3.53 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -3.71 Total: -22.37 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.10 Total: -43.31 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.53 -10.23 -40.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070196679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.884 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds