Wall clock time and date at job start Mon Mar 30 2020 06:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99795 * 2 1 4 4 H 1.48497 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47238 * 300.00041 * 3 2 1 6 6 H 1.48503 * 109.47245 * 59.99935 * 3 2 1 7 7 C 1.37869 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00137 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47511 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47273 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46765 * 179.97438 * 11 10 9 13 13 C 1.46416 * 111.00076 * 48.68881 * 12 11 10 14 14 C 1.53371 * 108.68489 * 178.95381 * 13 12 11 15 15 H 1.09002 * 109.81026 * 51.47966 * 14 13 12 16 16 N 1.46897 * 109.77113 * 172.23334 * 14 13 12 17 17 C 1.53045 * 107.94121 * 291.84444 * 14 13 12 18 18 C 1.50800 * 109.65483 * 47.38833 * 17 14 13 19 19 C 1.38617 * 118.12848 * 164.31659 * 18 17 14 20 20 C 1.38049 * 120.48199 * 179.39055 * 19 18 17 21 21 C 1.38320 * 119.88857 * 359.68542 * 20 19 18 22 22 C 1.37804 * 119.95203 * 0.70776 * 21 20 19 23 23 C 1.38378 * 122.00435 * 343.96404 * 18 17 14 24 24 H 0.97001 * 120.00019 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47485 * 59.99360 * 9 7 2 26 26 H 1.09001 * 109.47217 * 299.99629 * 9 7 2 27 27 H 1.09006 * 109.47219 * 60.00154 * 10 9 7 28 28 H 1.08999 * 109.47138 * 300.00146 * 10 9 7 29 29 H 1.08999 * 109.46741 * 60.00451 * 11 10 9 30 30 H 1.08994 * 109.47209 * 300.00202 * 11 10 9 31 31 H 1.09004 * 109.60689 * 59.19528 * 13 12 11 32 32 H 1.08999 * 109.60135 * 298.71368 * 13 12 11 33 33 H 1.00909 * 111.00087 * 178.48838 * 16 14 13 34 34 H 1.00898 * 111.00075 * 302.44121 * 16 14 13 35 35 H 1.08995 * 109.44322 * 287.32688 * 17 14 13 36 36 H 1.09007 * 109.43854 * 167.44075 * 17 14 13 37 37 H 1.07992 * 119.75571 * 359.36495 * 19 18 17 38 38 H 1.08003 * 120.05385 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.01995 * 180.43770 * 21 20 19 40 40 H 1.08001 * 119.78861 * 179.75279 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 3.4626 -5.9159 1.0265 14 6 4.4122 -7.1199 0.9969 15 1 4.7653 -7.2870 -0.0207 16 7 5.5558 -6.8728 1.8852 17 6 3.6348 -8.3455 1.4828 18 6 2.3026 -8.4127 0.7795 19 6 1.5978 -9.6054 0.8273 20 6 0.3676 -9.7170 0.2109 21 6 -0.1711 -8.6306 -0.4544 22 6 0.5274 -7.4441 -0.5130 23 6 1.7736 -7.3263 0.1051 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8535 -5.0451 -0.8886 30 1 0.8540 -5.0446 0.8913 31 1 2.9918 -5.8455 2.0071 32 1 4.0224 -5.0036 0.8208 33 1 6.1809 -7.6648 1.8987 34 1 6.0445 -6.0310 1.6197 35 1 3.4739 -8.2701 2.5582 36 1 4.2063 -9.2476 1.2644 37 1 2.0144 -10.4535 1.3501 38 1 -0.1754 -10.6497 0.2521 39 1 -1.1366 -8.7134 -0.9313 40 1 0.1060 -6.5987 -1.0366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070196679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:58 Heat of formation + Delta-G solvation = -1.375150 kcal Electronic energy + Delta-G solvation = -19231.691288 eV Core-core repulsion = 16430.414170 eV Total energy + Delta-G solvation = -2801.277118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.64489 -38.25290 -36.96563 -35.48598 -33.43879 -32.83281 -30.72682 -29.31464 -28.41807 -26.31146 -24.68161 -23.43655 -22.71921 -21.45112 -20.32985 -18.53703 -18.09764 -17.20118 -17.15447 -16.50352 -16.23940 -15.97055 -15.68157 -15.07703 -14.79260 -14.62988 -14.28244 -14.25092 -13.98324 -13.69507 -13.59546 -13.14044 -12.73833 -12.68584 -12.47172 -12.39186 -12.29877 -11.90345 -11.60339 -11.49683 -11.35890 -11.17851 -10.75495 -10.57458 -9.72247 -9.62073 -8.62968 -8.21707 -6.32959 0.46979 0.50366 1.39777 1.39815 1.53347 2.39366 2.56453 2.94543 3.11865 3.47237 3.64288 3.82776 3.87189 4.07931 4.16787 4.21478 4.29686 4.37885 4.43644 4.52856 4.55688 4.65913 4.73099 4.79714 4.83557 4.93256 5.02945 5.05993 5.13296 5.19503 5.31011 5.47480 5.55375 5.66880 5.68017 5.81294 5.89174 6.04297 6.16534 6.22384 6.39932 6.58823 6.83323 7.36554 8.90541 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024657 B = 0.004484 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.323015 B = 6242.981507 C = 7260.033563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.095 4.095 11 C 0.072 3.928 12 N -0.498 5.498 13 C 0.061 3.939 14 C 0.098 3.902 15 H 0.043 0.957 16 N -0.844 5.844 17 C -0.064 4.064 18 C -0.140 4.140 19 C -0.094 4.094 20 C -0.154 4.154 21 C -0.101 4.101 22 C -0.182 4.182 23 C 0.107 3.893 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.009 1.009 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.357 0.643 34 H 0.351 0.649 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.807 -20.566 1.950 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.053 4.053 12 N -0.211 5.211 13 C -0.066 4.066 14 C -0.014 4.014 15 H 0.061 0.939 16 N -0.377 5.377 17 C -0.101 4.101 18 C -0.144 4.144 19 C -0.112 4.112 20 C -0.173 4.173 21 C -0.119 4.119 22 C -0.203 4.203 23 C 0.008 3.992 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.009 0.991 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.171 0.829 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.422 -20.308 2.100 21.403 hybrid contribution 0.116 1.233 -0.440 1.314 sum 6.537 -19.075 1.661 20.232 Atomic orbital electron populations 1.70105 1.07827 1.27753 1.51684 1.25978 0.95760 1.03381 0.94650 0.85389 0.79107 0.78694 0.77805 1.18513 1.20326 1.20351 1.21674 0.93539 0.92192 1.50540 0.92131 1.18947 0.94299 0.92900 0.94922 1.21550 0.98296 0.92346 1.01100 1.22207 0.93418 0.88848 1.00845 1.58131 1.14822 1.01317 1.46791 1.22157 0.92834 0.99737 0.91824 1.21228 0.91577 0.93961 0.94649 0.93935 1.58572 1.13063 1.09628 1.56405 1.20504 0.91638 0.98161 0.99790 1.19727 0.98865 0.94087 1.01716 1.21232 0.94819 0.96537 0.98647 1.21317 0.96556 0.99503 0.99898 1.21223 0.99988 0.92306 0.98417 1.21339 0.94935 0.99989 1.04057 1.18954 0.92845 0.90769 0.96671 0.92740 0.98762 0.99093 0.92454 0.92467 0.90297 0.94938 0.94399 0.89718 0.82871 0.83591 0.90078 0.88738 0.83499 0.83459 0.84244 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.44 0.28 -57.02 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.34 7.74 -2.90 -0.02 3.32 16 9 C 0.03 1.45 4.97 29.85 0.15 1.59 16 10 C -0.10 -4.03 4.51 30.60 0.14 -3.89 16 11 C 0.07 2.67 4.33 86.30 0.37 3.04 16 12 N -0.50 -16.22 4.65 -695.87 -3.24 -19.46 16 13 C 0.06 1.81 4.30 86.52 0.37 2.18 16 14 C 0.10 2.24 3.47 45.06 0.16 2.40 16 15 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 16 N -0.84 -15.52 9.26 -168.10 -1.56 -17.07 16 17 C -0.06 -1.33 5.40 29.89 0.16 -1.17 16 18 C -0.14 -3.54 5.74 -19.71 -0.11 -3.65 16 19 C -0.09 -1.94 9.63 22.32 0.21 -1.73 16 20 C -0.15 -3.09 10.05 22.24 0.22 -2.87 16 21 C -0.10 -2.37 10.04 22.19 0.22 -2.14 16 22 C -0.18 -5.32 9.03 22.50 0.20 -5.12 16 23 C 0.11 3.23 5.81 38.30 0.22 3.45 16 24 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.06 2.35 6.35 -2.38 -0.02 2.34 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.08 2.91 6.35 -2.39 -0.02 2.90 16 30 H 0.03 1.25 8.12 -2.39 -0.02 1.23 16 31 H 0.04 1.21 8.11 -2.39 -0.02 1.19 16 32 H 0.08 2.58 6.28 -2.39 -0.01 2.57 16 33 H 0.36 4.77 9.04 -89.69 -0.81 3.96 16 34 H 0.35 6.04 9.02 -89.70 -0.81 5.23 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.12 3.55 5.98 -2.91 -0.02 3.53 16 Total: -1.00 -66.54 318.23 -0.05 -66.58 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.58 Total: 18.79 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 3.02 Total: -38.37 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -4.51 Total: -93.55 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -66.54 -0.05 -66.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070196679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.210 kcal (2) G-P(sol) polarization free energy of solvation -66.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds