Wall clock time and date at job start Mon Mar 30 2020 07:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50705 * 119.99841 * 2 1 4 4 C 1.30997 * 120.00074 * 180.02562 * 2 1 3 5 5 C 1.50698 * 119.99944 * 0.02562 * 4 2 1 6 6 N 1.46898 * 109.47247 * 124.99952 * 5 4 2 7 7 C 1.46903 * 110.99688 * 66.04400 * 6 5 4 8 8 C 1.50700 * 109.47268 * 63.06117 * 7 6 5 9 9 H 1.08001 * 119.99609 * 5.12291 * 8 7 6 10 10 C 1.37882 * 120.00181 * 185.11616 * 8 7 6 11 11 N 1.31515 * 119.99841 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00019 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46640 * 90.00302 * 12 10 8 14 14 H 1.48494 * 109.47323 * 210.00392 * 12 10 8 15 15 H 1.48499 * 109.47208 * 330.00470 * 12 10 8 16 16 C 1.46893 * 111.00146 * 189.99551 * 6 5 4 17 17 C 1.50704 * 109.47310 * 163.95008 * 16 6 5 18 18 C 1.38680 * 120.41120 * 275.49501 * 17 16 6 19 19 C 1.38636 * 118.41364 * 179.78094 * 18 17 16 20 20 C 1.38227 * 119.15782 * 0.51123 * 19 18 17 21 21 N 1.31851 * 120.76777 * 359.72504 * 20 19 18 22 22 C 1.31888 * 121.72781 * 0.02562 * 21 20 19 23 23 H 1.08993 * 109.47006 * 239.99994 * 1 2 3 24 24 H 1.08997 * 109.47304 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47056 * 119.99721 * 1 2 3 26 26 H 1.08993 * 109.47300 * 270.00252 * 3 2 1 27 27 H 1.08998 * 109.46958 * 30.00242 * 3 2 1 28 28 H 1.09001 * 109.46963 * 150.00076 * 3 2 1 29 29 H 1.07997 * 119.99654 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.46796 * 245.00254 * 5 4 2 31 31 H 1.08994 * 109.47237 * 4.99310 * 5 4 2 32 32 H 1.09004 * 109.46785 * 183.05677 * 7 6 5 33 33 H 1.08998 * 109.47319 * 303.05672 * 7 6 5 34 34 H 0.97000 * 119.99736 * 179.97438 * 11 10 8 35 35 H 1.08997 * 109.47463 * 283.95264 * 16 6 5 36 36 H 1.09002 * 109.46816 * 43.94913 * 16 6 5 37 37 H 1.07996 * 120.79616 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.41933 * 180.21649 * 19 18 17 39 39 H 1.08000 * 119.61631 * 179.74814 * 20 19 18 40 40 H 1.07995 * 119.61741 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4085 -2.4395 -0.0017 6 7 1.8521 -3.2601 -1.1366 7 6 3.2546 -3.6663 -0.9760 8 6 3.3893 -4.5340 0.2488 9 1 2.5092 -4.8291 0.8008 10 6 4.6360 -4.9512 0.6645 11 7 5.7077 -4.5915 -0.0075 12 14 4.8029 -6.0261 2.1831 13 1 4.7300 -7.4557 1.7879 14 1 6.1089 -5.7593 2.8374 15 1 3.7022 -5.7179 3.1312 16 6 0.9818 -4.4304 -1.3120 17 6 1.2054 -5.0222 -2.6798 18 6 0.5337 -4.5156 -3.7823 19 6 0.7741 -5.0883 -5.0217 20 6 1.6608 -6.1446 -5.1150 21 7 2.2781 -6.6036 -4.0441 22 6 2.0776 -6.0802 -2.8502 23 1 -0.3633 -0.5138 0.8899 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 2.4421 1.6199 -1.0276 27 1 1.6714 2.0648 0.5139 28 1 3.2129 1.1748 0.5138 29 1 3.2420 -1.1344 -0.0001 30 1 1.6026 -2.9719 0.9295 31 1 0.3403 -2.2423 -0.0914 32 1 3.5735 -4.2266 -1.8550 33 1 3.8791 -2.7801 -0.8639 34 1 6.5848 -4.8847 0.2852 35 1 1.2163 -5.1749 -0.5512 36 1 -0.0603 -4.1262 -1.2136 37 1 -0.1572 -3.6921 -3.6784 38 1 0.2713 -4.7170 -5.9024 39 1 1.8505 -6.5989 -6.0762 40 1 2.6012 -6.4833 -1.9960 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078663795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:09 Heat of formation + Delta-G solvation = 45.556668 kcal Electronic energy + Delta-G solvation = -19416.527103 eV Core-core repulsion = 16617.285101 eV Total energy + Delta-G solvation = -2799.242002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71511 -37.46595 -35.36429 -32.71588 -31.96791 -31.12507 -28.43503 -27.41389 -27.04891 -24.88110 -23.52359 -22.99422 -21.77096 -19.84846 -17.39982 -16.65787 -16.35092 -15.82409 -15.11579 -14.91651 -14.60386 -14.19202 -13.84289 -13.57363 -13.39170 -12.95851 -12.82514 -12.59451 -12.38288 -12.18315 -11.70201 -11.51155 -11.42806 -11.15189 -10.99981 -10.83607 -10.77722 -10.32881 -10.15588 -9.97937 -9.63518 -9.31309 -8.94961 -8.54491 -8.43628 -8.20456 -7.19302 -6.04885 -4.14600 1.58778 1.75900 2.72348 3.25664 3.33433 3.34649 4.26882 4.38000 4.91248 5.13696 5.19850 5.25385 5.31558 5.34673 5.44269 5.45132 5.62595 5.75629 5.80098 5.86295 5.90830 5.99796 6.03954 6.09208 6.20447 6.22911 6.30348 6.46130 6.50677 6.53663 6.58639 6.85352 7.14635 7.22262 7.27556 7.46480 7.52291 7.88201 7.99092 8.21773 8.25250 8.46902 8.95295 9.52165 10.99859 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.010353 B = 0.008933 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.922046 B = 3133.647099 C = 5265.969023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.168 4.168 3 C -0.107 4.107 4 C -0.114 4.114 5 C 0.084 3.916 6 N -0.532 5.532 7 C 0.184 3.816 8 C -0.551 4.551 9 H 0.057 0.943 10 C 0.069 3.931 11 N -0.886 5.886 12 Si 0.885 3.115 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.095 3.905 17 C -0.106 4.106 18 C -0.064 4.064 19 C -0.184 4.184 20 C 0.082 3.918 21 N -0.490 5.490 22 C 0.120 3.880 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.146 0.854 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.848 4.650 -4.116 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.169 4.169 3 C -0.164 4.164 4 C -0.132 4.132 5 C -0.043 4.043 6 N -0.256 5.256 7 C 0.058 3.942 8 C -0.590 4.590 9 H 0.075 0.925 10 C -0.135 4.135 11 N -0.524 5.524 12 Si 0.712 3.288 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.033 4.033 17 C -0.108 4.108 18 C -0.091 4.091 19 C -0.204 4.204 20 C -0.075 4.075 21 N -0.198 5.198 22 C -0.037 4.037 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.163 0.837 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.095 4.226 -4.629 11.883 hybrid contribution -0.089 -0.354 1.624 1.664 sum -10.184 3.872 -3.006 11.302 Atomic orbital electron populations 1.20715 0.93074 1.01056 1.01531 1.21376 0.95276 0.94817 1.05420 1.20729 0.99439 0.94924 1.01327 1.22704 1.00013 0.93169 0.97340 1.21078 0.96790 0.92136 0.94327 1.62651 1.05408 1.17845 1.39647 1.19813 0.82684 0.95892 0.95772 1.21661 0.92595 1.32471 1.12273 0.92514 1.24926 0.95919 0.96003 0.96618 1.69942 0.98205 1.44835 1.39395 0.86713 0.77534 0.81073 0.83438 1.20532 1.21176 1.20006 1.20869 0.96222 0.93957 0.92275 1.20865 0.96947 0.96258 0.96754 1.21402 0.97989 0.97719 0.91968 1.22006 1.01312 0.98941 0.98182 1.22625 0.93411 0.94280 0.97212 1.67711 1.22939 1.29879 0.99316 1.22926 0.93513 0.92469 0.94804 0.92318 0.93074 0.91878 0.92223 0.92805 0.92277 0.87101 0.92826 0.92164 0.95306 0.94562 0.92773 0.92131 0.92041 0.85456 0.85654 0.83687 0.82192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 8.53 36.01 0.31 -1.07 16 2 C -0.17 -2.57 6.05 -101.06 -0.61 -3.18 16 3 C -0.11 -1.42 9.97 36.01 0.36 -1.06 16 4 C -0.11 -2.07 8.78 -36.03 -0.32 -2.39 16 5 C 0.08 1.57 5.02 -4.98 -0.03 1.54 16 6 N -0.53 -10.83 4.65 -238.97 -1.11 -11.94 16 7 C 0.18 4.53 4.75 -4.97 -0.02 4.51 16 8 C -0.55 -14.30 7.34 -34.44 -0.25 -14.55 16 9 H 0.06 1.45 5.95 -52.49 -0.31 1.14 16 10 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 11 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 12 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.10 1.74 4.97 -4.98 -0.02 1.72 16 17 C -0.11 -1.90 4.91 -104.48 -0.51 -2.41 16 18 C -0.06 -0.99 9.88 -39.27 -0.39 -1.38 16 19 C -0.18 -2.59 10.11 -39.44 -0.40 -2.99 16 20 C 0.08 1.27 11.18 -17.55 -0.20 1.07 16 21 N -0.49 -9.26 10.36 -13.26 -0.14 -9.40 16 22 C 0.12 2.35 9.69 -17.55 -0.17 2.18 16 23 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 24 H 0.05 0.56 7.94 -51.93 -0.41 0.15 16 25 H 0.06 0.81 7.66 -51.93 -0.40 0.42 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.61 8.05 -51.93 -0.42 0.19 16 28 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 29 H 0.11 2.27 6.87 -52.49 -0.36 1.91 16 30 H 0.05 1.11 6.60 -51.93 -0.34 0.77 16 31 H 0.06 0.98 5.51 -51.93 -0.29 0.69 16 32 H 0.03 0.78 6.62 -51.93 -0.34 0.44 16 33 H 0.04 0.98 6.53 -51.93 -0.34 0.64 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.06 1.20 6.05 -51.93 -0.31 0.89 16 36 H 0.06 0.97 7.79 -51.93 -0.40 0.56 16 37 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.16 3.36 8.06 -52.49 -0.42 2.93 16 LS Contribution 325.95 15.07 4.91 4.91 Total: -1.00 -28.96 325.95 -8.98 -37.94 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.01 Total: 3.59 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.35 Total: -16.26 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.51 Total: -46.10 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.96 -8.98 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078663795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.494 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds