Wall clock time and date at job start Mon Mar 30 2020 07:18:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.50705 * 119.99841 * 2 1
4 4 C 1.30997 * 120.00074 * 180.02562 * 2 1 3
5 5 C 1.50698 * 119.99944 * 0.02562 * 4 2 1
6 6 N 1.46898 * 109.47247 * 124.99952 * 5 4 2
7 7 C 1.46903 * 110.99688 * 66.04400 * 6 5 4
8 8 C 1.50700 * 109.47268 * 63.06117 * 7 6 5
9 9 H 1.08001 * 119.99609 * 5.12291 * 8 7 6
10 10 C 1.37882 * 120.00181 * 185.11616 * 8 7 6
11 11 N 1.31515 * 119.99841 * 0.02562 * 10 8 7
12 12 Si 1.86799 * 120.00019 * 179.97438 * 10 8 7
13 13 H 1.48501 * 109.46640 * 90.00302 * 12 10 8
14 14 H 1.48494 * 109.47323 * 210.00392 * 12 10 8
15 15 H 1.48499 * 109.47208 * 330.00470 * 12 10 8
16 16 C 1.46893 * 111.00146 * 189.99551 * 6 5 4
17 17 C 1.50704 * 109.47310 * 163.95008 * 16 6 5
18 18 C 1.38680 * 120.41120 * 275.49501 * 17 16 6
19 19 C 1.38636 * 118.41364 * 179.78094 * 18 17 16
20 20 C 1.38227 * 119.15782 * 0.51123 * 19 18 17
21 21 N 1.31851 * 120.76777 * 359.72504 * 20 19 18
22 22 C 1.31888 * 121.72781 * 0.02562 * 21 20 19
23 23 H 1.08993 * 109.47006 * 239.99994 * 1 2 3
24 24 H 1.08997 * 109.47304 * 0.02562 * 1 2 3
25 25 H 1.08997 * 109.47056 * 119.99721 * 1 2 3
26 26 H 1.08993 * 109.47300 * 270.00252 * 3 2 1
27 27 H 1.08998 * 109.46958 * 30.00242 * 3 2 1
28 28 H 1.09001 * 109.46963 * 150.00076 * 3 2 1
29 29 H 1.07997 * 119.99654 * 180.02562 * 4 2 1
30 30 H 1.09001 * 109.46796 * 245.00254 * 5 4 2
31 31 H 1.08994 * 109.47237 * 4.99310 * 5 4 2
32 32 H 1.09004 * 109.46785 * 183.05677 * 7 6 5
33 33 H 1.08998 * 109.47319 * 303.05672 * 7 6 5
34 34 H 0.97000 * 119.99736 * 179.97438 * 11 10 8
35 35 H 1.08997 * 109.47463 * 283.95264 * 16 6 5
36 36 H 1.09002 * 109.46816 * 43.94913 * 16 6 5
37 37 H 1.07996 * 120.79616 * 0.02562 * 18 17 16
38 38 H 1.07997 * 120.41933 * 180.21649 * 19 18 17
39 39 H 1.08000 * 119.61631 * 179.74814 * 20 19 18
40 40 H 1.07995 * 119.61741 * 179.97438 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2605 1.3052 0.0000
4 6 2.1620 -1.1345 -0.0005
5 6 1.4085 -2.4395 -0.0017
6 7 1.8521 -3.2601 -1.1366
7 6 3.2546 -3.6663 -0.9760
8 6 3.3893 -4.5340 0.2488
9 1 2.5092 -4.8291 0.8008
10 6 4.6360 -4.9512 0.6645
11 7 5.7077 -4.5915 -0.0075
12 14 4.8029 -6.0261 2.1831
13 1 4.7300 -7.4557 1.7879
14 1 6.1089 -5.7593 2.8374
15 1 3.7022 -5.7179 3.1312
16 6 0.9818 -4.4304 -1.3120
17 6 1.2054 -5.0222 -2.6798
18 6 0.5337 -4.5156 -3.7823
19 6 0.7741 -5.0883 -5.0217
20 6 1.6608 -6.1446 -5.1150
21 7 2.2781 -6.6036 -4.0441
22 6 2.0776 -6.0802 -2.8502
23 1 -0.3633 -0.5138 0.8899
24 1 -0.3634 1.0276 -0.0005
25 1 -0.3633 -0.5138 -0.8900
26 1 2.4421 1.6199 -1.0276
27 1 1.6714 2.0648 0.5139
28 1 3.2129 1.1748 0.5138
29 1 3.2420 -1.1344 -0.0001
30 1 1.6026 -2.9719 0.9295
31 1 0.3403 -2.2423 -0.0914
32 1 3.5735 -4.2266 -1.8550
33 1 3.8791 -2.7801 -0.8639
34 1 6.5848 -4.8847 0.2852
35 1 1.2163 -5.1749 -0.5512
36 1 -0.0603 -4.1262 -1.2136
37 1 -0.1572 -3.6921 -3.6784
38 1 0.2713 -4.7170 -5.9024
39 1 1.8505 -6.5989 -6.0762
40 1 2.6012 -6.4833 -1.9960
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000078663795.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:18:09
Heat of formation + Delta-G solvation = 45.556668 kcal
Electronic energy + Delta-G solvation = -19416.527103 eV
Core-core repulsion = 16617.285101 eV
Total energy + Delta-G solvation = -2799.242002 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-39.71511 -37.46595 -35.36429 -32.71588 -31.96791 -31.12507 -28.43503 -27.41389
-27.04891 -24.88110 -23.52359 -22.99422 -21.77096 -19.84846 -17.39982 -16.65787
-16.35092 -15.82409 -15.11579 -14.91651 -14.60386 -14.19202 -13.84289 -13.57363
-13.39170 -12.95851 -12.82514 -12.59451 -12.38288 -12.18315 -11.70201 -11.51155
-11.42806 -11.15189 -10.99981 -10.83607 -10.77722 -10.32881 -10.15588 -9.97937
-9.63518 -9.31309 -8.94961 -8.54491 -8.43628 -8.20456 -7.19302 -6.04885
-4.14600 1.58778 1.75900 2.72348 3.25664 3.33433 3.34649 4.26882
4.38000 4.91248 5.13696 5.19850 5.25385 5.31558 5.34673 5.44269
5.45132 5.62595 5.75629 5.80098 5.86295 5.90830 5.99796 6.03954
6.09208 6.20447 6.22911 6.30348 6.46130 6.50677 6.53663 6.58639
6.85352 7.14635 7.22262 7.27556 7.46480 7.52291 7.88201 7.99092
8.21773 8.25250 8.46902 8.95295 9.52165 10.99859
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.010353 B = 0.008933 C = 0.005316
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2703.922046 B = 3133.647099 C = 5265.969023
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.168 4.168
3 C -0.107 4.107
4 C -0.114 4.114
5 C 0.084 3.916
6 N -0.532 5.532
7 C 0.184 3.816
8 C -0.551 4.551
9 H 0.057 0.943
10 C 0.069 3.931
11 N -0.886 5.886
12 Si 0.885 3.115
13 H -0.279 1.279
14 H -0.286 1.286
15 H -0.275 1.275
16 C 0.095 3.905
17 C -0.106 4.106
18 C -0.064 4.064
19 C -0.184 4.184
20 C 0.082 3.918
21 N -0.490 5.490
22 C 0.120 3.880
23 H 0.058 0.942
24 H 0.050 0.950
25 H 0.062 0.938
26 H 0.059 0.941
27 H 0.053 0.947
28 H 0.058 0.942
29 H 0.111 0.889
30 H 0.054 0.946
31 H 0.060 0.940
32 H 0.029 0.971
33 H 0.036 0.964
34 H 0.262 0.738
35 H 0.061 0.939
36 H 0.061 0.939
37 H 0.128 0.872
38 H 0.125 0.875
39 H 0.146 0.854
40 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.848 4.650 -4.116 12.499
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.169 4.169
3 C -0.164 4.164
4 C -0.132 4.132
5 C -0.043 4.043
6 N -0.256 5.256
7 C 0.058 3.942
8 C -0.590 4.590
9 H 0.075 0.925
10 C -0.135 4.135
11 N -0.524 5.524
12 Si 0.712 3.288
13 H -0.205 1.205
14 H -0.212 1.212
15 H -0.200 1.200
16 C -0.033 4.033
17 C -0.108 4.108
18 C -0.091 4.091
19 C -0.204 4.204
20 C -0.075 4.075
21 N -0.198 5.198
22 C -0.037 4.037
23 H 0.077 0.923
24 H 0.069 0.931
25 H 0.081 0.919
26 H 0.078 0.922
27 H 0.072 0.928
28 H 0.077 0.923
29 H 0.129 0.871
30 H 0.072 0.928
31 H 0.078 0.922
32 H 0.047 0.953
33 H 0.054 0.946
34 H 0.072 0.928
35 H 0.079 0.921
36 H 0.080 0.920
37 H 0.145 0.855
38 H 0.143 0.857
39 H 0.163 0.837
40 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -10.095 4.226 -4.629 11.883
hybrid contribution -0.089 -0.354 1.624 1.664
sum -10.184 3.872 -3.006 11.302
Atomic orbital electron populations
1.20715 0.93074 1.01056 1.01531 1.21376 0.95276 0.94817 1.05420
1.20729 0.99439 0.94924 1.01327 1.22704 1.00013 0.93169 0.97340
1.21078 0.96790 0.92136 0.94327 1.62651 1.05408 1.17845 1.39647
1.19813 0.82684 0.95892 0.95772 1.21661 0.92595 1.32471 1.12273
0.92514 1.24926 0.95919 0.96003 0.96618 1.69942 0.98205 1.44835
1.39395 0.86713 0.77534 0.81073 0.83438 1.20532 1.21176 1.20006
1.20869 0.96222 0.93957 0.92275 1.20865 0.96947 0.96258 0.96754
1.21402 0.97989 0.97719 0.91968 1.22006 1.01312 0.98941 0.98182
1.22625 0.93411 0.94280 0.97212 1.67711 1.22939 1.29879 0.99316
1.22926 0.93513 0.92469 0.94804 0.92318 0.93074 0.91878 0.92223
0.92805 0.92277 0.87101 0.92826 0.92164 0.95306 0.94562 0.92773
0.92131 0.92041 0.85456 0.85654 0.83687 0.82192
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.37 8.53 36.01 0.31 -1.07 16
2 C -0.17 -2.57 6.05 -101.06 -0.61 -3.18 16
3 C -0.11 -1.42 9.97 36.01 0.36 -1.06 16
4 C -0.11 -2.07 8.78 -36.03 -0.32 -2.39 16
5 C 0.08 1.57 5.02 -4.98 -0.03 1.54 16
6 N -0.53 -10.83 4.65 -238.97 -1.11 -11.94 16
7 C 0.18 4.53 4.75 -4.97 -0.02 4.51 16
8 C -0.55 -14.30 7.34 -34.44 -0.25 -14.55 16
9 H 0.06 1.45 5.95 -52.49 -0.31 1.14 16
10 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16
11 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16
12 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16
13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
16 C 0.10 1.74 4.97 -4.98 -0.02 1.72 16
17 C -0.11 -1.90 4.91 -104.48 -0.51 -2.41 16
18 C -0.06 -0.99 9.88 -39.27 -0.39 -1.38 16
19 C -0.18 -2.59 10.11 -39.44 -0.40 -2.99 16
20 C 0.08 1.27 11.18 -17.55 -0.20 1.07 16
21 N -0.49 -9.26 10.36 -13.26 -0.14 -9.40 16
22 C 0.12 2.35 9.69 -17.55 -0.17 2.18 16
23 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16
24 H 0.05 0.56 7.94 -51.93 -0.41 0.15 16
25 H 0.06 0.81 7.66 -51.93 -0.40 0.42 16
26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
27 H 0.05 0.61 8.05 -51.93 -0.42 0.19 16
28 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16
29 H 0.11 2.27 6.87 -52.49 -0.36 1.91 16
30 H 0.05 1.11 6.60 -51.93 -0.34 0.77 16
31 H 0.06 0.98 5.51 -51.93 -0.29 0.69 16
32 H 0.03 0.78 6.62 -51.93 -0.34 0.44 16
33 H 0.04 0.98 6.53 -51.93 -0.34 0.64 16
34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16
35 H 0.06 1.20 6.05 -51.93 -0.31 0.89 16
36 H 0.06 0.97 7.79 -51.93 -0.40 0.56 16
37 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16
38 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16
39 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16
40 H 0.16 3.36 8.06 -52.49 -0.42 2.93 16
LS Contribution 325.95 15.07 4.91 4.91
Total: -1.00 -28.96 325.95 -8.98 -37.94
By element:
Atomic # 1 Polarization: 9.60 SS G_CDS: -6.01 Total: 3.59 kcal
Atomic # 6 Polarization: -13.91 SS G_CDS: -2.35 Total: -16.26 kcal
Atomic # 7 Polarization: -45.59 SS G_CDS: -0.51 Total: -46.10 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -28.96 -8.98 -37.94 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000078663795.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.494 kcal
(2) G-P(sol) polarization free energy of solvation -28.959 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.535 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.557 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds