Wall clock time and date at job start Mon Mar 30 2020 07:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50705 * 119.99841 * 2 1 4 4 C 1.30997 * 120.00074 * 180.02562 * 2 1 3 5 5 C 1.50698 * 119.99944 * 0.02562 * 4 2 1 6 6 N 1.46898 * 109.47247 * 124.99952 * 5 4 2 7 7 C 1.46903 * 110.99688 * 66.04400 * 6 5 4 8 8 C 1.50700 * 109.47268 * 63.06117 * 7 6 5 9 9 H 1.08001 * 119.99609 * 5.12291 * 8 7 6 10 10 C 1.37882 * 120.00181 * 185.11616 * 8 7 6 11 11 N 1.31515 * 119.99841 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00019 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46640 * 90.00302 * 12 10 8 14 14 H 1.48494 * 109.47323 * 210.00392 * 12 10 8 15 15 H 1.48499 * 109.47208 * 330.00470 * 12 10 8 16 16 C 1.46893 * 111.00146 * 189.99551 * 6 5 4 17 17 C 1.50704 * 109.47310 * 163.95008 * 16 6 5 18 18 C 1.38680 * 120.41120 * 275.49501 * 17 16 6 19 19 C 1.38636 * 118.41364 * 179.78094 * 18 17 16 20 20 C 1.38227 * 119.15782 * 0.51123 * 19 18 17 21 21 N 1.31851 * 120.76777 * 359.72504 * 20 19 18 22 22 C 1.31888 * 121.72781 * 0.02562 * 21 20 19 23 23 H 1.08993 * 109.47006 * 239.99994 * 1 2 3 24 24 H 1.08997 * 109.47304 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47056 * 119.99721 * 1 2 3 26 26 H 1.08993 * 109.47300 * 270.00252 * 3 2 1 27 27 H 1.08998 * 109.46958 * 30.00242 * 3 2 1 28 28 H 1.09001 * 109.46963 * 150.00076 * 3 2 1 29 29 H 1.07997 * 119.99654 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.46796 * 245.00254 * 5 4 2 31 31 H 1.08994 * 109.47237 * 4.99310 * 5 4 2 32 32 H 1.09004 * 109.46785 * 183.05677 * 7 6 5 33 33 H 1.08998 * 109.47319 * 303.05672 * 7 6 5 34 34 H 0.97000 * 119.99736 * 179.97438 * 11 10 8 35 35 H 1.08997 * 109.47463 * 283.95264 * 16 6 5 36 36 H 1.09002 * 109.46816 * 43.94913 * 16 6 5 37 37 H 1.07996 * 120.79616 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.41933 * 180.21649 * 19 18 17 39 39 H 1.08000 * 119.61631 * 179.74814 * 20 19 18 40 40 H 1.07995 * 119.61741 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4085 -2.4395 -0.0017 6 7 1.8521 -3.2601 -1.1366 7 6 3.2546 -3.6663 -0.9760 8 6 3.3893 -4.5340 0.2488 9 1 2.5092 -4.8291 0.8008 10 6 4.6360 -4.9512 0.6645 11 7 5.7077 -4.5915 -0.0075 12 14 4.8029 -6.0261 2.1831 13 1 4.7300 -7.4557 1.7879 14 1 6.1089 -5.7593 2.8374 15 1 3.7022 -5.7179 3.1312 16 6 0.9818 -4.4304 -1.3120 17 6 1.2054 -5.0222 -2.6798 18 6 0.5337 -4.5156 -3.7823 19 6 0.7741 -5.0883 -5.0217 20 6 1.6608 -6.1446 -5.1150 21 7 2.2781 -6.6036 -4.0441 22 6 2.0776 -6.0802 -2.8502 23 1 -0.3633 -0.5138 0.8899 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 2.4421 1.6199 -1.0276 27 1 1.6714 2.0648 0.5139 28 1 3.2129 1.1748 0.5138 29 1 3.2420 -1.1344 -0.0001 30 1 1.6026 -2.9719 0.9295 31 1 0.3403 -2.2423 -0.0914 32 1 3.5735 -4.2266 -1.8550 33 1 3.8791 -2.7801 -0.8639 34 1 6.5848 -4.8847 0.2852 35 1 1.2163 -5.1749 -0.5512 36 1 -0.0603 -4.1262 -1.2136 37 1 -0.1572 -3.6921 -3.6784 38 1 0.2713 -4.7170 -5.9024 39 1 1.8505 -6.5989 -6.0762 40 1 2.6012 -6.4833 -1.9960 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078663795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:09 Heat of formation + Delta-G solvation = 28.079744 kcal Electronic energy + Delta-G solvation = -19417.284959 eV Core-core repulsion = 16617.285101 eV Total energy + Delta-G solvation = -2799.999858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04457 -38.98733 -36.73686 -34.65769 -33.42329 -32.41928 -29.91117 -28.84408 -28.46782 -26.41538 -25.25226 -24.31380 -23.13928 -21.49837 -18.94105 -18.27519 -17.80140 -17.23663 -16.69766 -16.59265 -16.01770 -15.74962 -15.23680 -14.90932 -14.62568 -14.41787 -14.30342 -14.04879 -13.81102 -13.31369 -13.16136 -13.01382 -12.81552 -12.68471 -12.55845 -12.49358 -12.27881 -12.09415 -11.89108 -11.70050 -11.38286 -10.63437 -10.56057 -10.27022 -9.86766 -9.53676 -8.92964 -8.13166 -6.31841 0.29636 0.49308 1.34617 1.35569 1.39594 1.44689 2.36346 2.94313 3.11886 3.60111 3.69385 3.99593 4.05773 4.09859 4.21977 4.25965 4.29265 4.54610 4.58576 4.64134 4.70815 4.77717 4.85270 4.99030 5.00155 5.02109 5.03669 5.09130 5.18473 5.24759 5.28501 5.34980 5.38710 5.52880 5.76753 5.91868 5.93359 6.05603 6.15054 6.26191 6.56186 6.89110 7.15649 7.38668 8.88617 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.010353 B = 0.008933 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.922046 B = 3133.647099 C = 5265.969023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.136 4.136 3 C -0.112 4.112 4 C -0.161 4.161 5 C 0.093 3.907 6 N -0.529 5.529 7 C 0.207 3.793 8 C -0.546 4.546 9 H 0.059 0.941 10 C 0.014 3.986 11 N -0.925 5.925 12 Si 0.949 3.051 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.098 3.902 17 C -0.121 4.121 18 C -0.063 4.063 19 C -0.167 4.167 20 C 0.075 3.925 21 N -0.522 5.522 22 C 0.091 3.909 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.094 0.906 32 H -0.002 1.002 33 H 0.003 0.997 34 H 0.262 0.738 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.180 0.820 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.907 6.035 -4.952 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.137 4.137 3 C -0.169 4.169 4 C -0.179 4.179 5 C -0.034 4.034 6 N -0.252 5.252 7 C 0.080 3.920 8 C -0.585 4.585 9 H 0.077 0.923 10 C -0.186 4.186 11 N -0.565 5.565 12 Si 0.774 3.226 13 H -0.202 1.202 14 H -0.210 1.210 15 H -0.190 1.190 16 C -0.030 4.030 17 C -0.123 4.123 18 C -0.089 4.089 19 C -0.187 4.187 20 C -0.083 4.083 21 N -0.231 5.231 22 C -0.065 4.065 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.112 0.888 32 H 0.016 0.984 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.115 0.885 37 H 0.174 0.826 38 H 0.189 0.811 39 H 0.197 0.803 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.176 5.612 -5.449 15.323 hybrid contribution 0.780 -0.685 1.760 2.043 sum -12.396 4.927 -3.689 13.840 Atomic orbital electron populations 1.20805 0.90495 1.03096 1.02166 1.21834 0.97141 0.94437 1.00286 1.20833 0.99281 0.94586 1.02208 1.22428 0.98292 0.94379 1.02841 1.21069 0.98549 0.91617 0.92209 1.62563 1.03420 1.18703 1.40533 1.19309 0.85169 0.93591 0.93903 1.21906 0.92561 1.31691 1.12316 0.92273 1.25741 0.95755 0.97480 0.99601 1.70077 0.98627 1.46554 1.41271 0.85695 0.77609 0.79260 0.80021 1.20157 1.21007 1.18961 1.20902 0.97375 0.92527 0.92167 1.20843 0.97667 0.96244 0.97568 1.21762 0.97587 0.98041 0.91503 1.22476 0.99790 0.97253 0.99152 1.23290 0.92942 0.94714 0.97325 1.67624 1.24419 1.31166 0.99893 1.22541 0.95091 0.94253 0.94586 0.91443 0.90458 0.91261 0.91256 0.89957 0.93328 0.90940 0.95617 0.88810 0.98414 0.97863 0.92904 0.94561 0.88539 0.82550 0.81058 0.80346 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 8.53 71.24 0.61 -1.77 16 2 C -0.14 -3.93 6.05 -16.48 -0.10 -4.03 16 3 C -0.11 -2.75 9.97 71.24 0.71 -2.04 16 4 C -0.16 -5.98 8.78 25.65 0.23 -5.75 16 5 C 0.09 3.46 5.02 85.56 0.43 3.89 16 6 N -0.53 -22.03 4.65 -909.96 -4.23 -26.26 16 7 C 0.21 10.87 4.75 85.56 0.41 11.28 16 8 C -0.55 -29.86 7.34 25.60 0.19 -29.68 16 9 H 0.06 3.15 5.95 -2.91 -0.02 3.13 16 10 C 0.01 0.77 5.46 84.66 0.46 1.23 16 11 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 12 Si 0.95 44.54 29.54 68.60 2.03 46.56 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 C 0.10 3.61 4.97 85.56 0.43 4.04 16 17 C -0.12 -4.35 4.91 -19.77 -0.10 -4.45 16 18 C -0.06 -1.76 9.88 22.47 0.22 -1.54 16 19 C -0.17 -4.10 10.11 22.36 0.23 -3.87 16 20 C 0.07 2.16 11.18 84.69 0.95 3.11 16 21 N -0.52 -20.11 10.36 -195.85 -2.03 -22.14 16 22 C 0.09 3.77 9.69 84.67 0.82 4.59 16 23 H 0.07 1.41 7.85 -2.39 -0.02 1.39 16 24 H 0.08 1.32 7.94 -2.39 -0.02 1.30 16 25 H 0.07 1.49 7.66 -2.39 -0.02 1.47 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 1.57 8.05 -2.39 -0.02 1.55 16 28 H 0.05 1.29 8.06 -2.39 -0.02 1.27 16 29 H 0.07 3.22 6.87 -2.91 -0.02 3.20 16 30 H 0.03 1.10 6.60 -2.39 -0.02 1.08 16 31 H 0.09 2.83 5.51 -2.39 -0.01 2.82 16 32 H 0.00 -0.13 6.62 -2.38 -0.02 -0.15 16 33 H 0.00 0.19 6.53 -2.39 -0.02 0.18 16 34 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.04 1.50 6.05 -2.39 -0.01 1.48 16 36 H 0.10 2.82 7.79 -2.39 -0.02 2.81 16 37 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 38 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 39 H 0.18 3.81 8.06 -2.91 -0.02 3.78 16 40 H 0.13 5.83 8.06 -2.91 -0.02 5.80 16 Total: -1.00 -67.85 325.95 2.54 -65.32 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 1.01 Total: 17.41 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 5.47 Total: -24.99 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -5.97 Total: -104.30 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -67.85 2.54 -65.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078663795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.397 kcal (2) G-P(sol) polarization free energy of solvation -67.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds