Wall clock time and date at job start Mon Mar 30 2020 06:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86792 * 119.99923 * 2 1 4 4 H 1.48503 * 109.46918 * 239.99683 * 3 2 1 5 5 H 1.48497 * 109.47457 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47319 * 119.99812 * 3 2 1 7 7 C 1.39867 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 197.95524 * 7 2 1 9 9 C 1.41144 * 119.99799 * 17.96337 * 7 2 1 10 10 C 1.40889 * 120.14916 * 204.60666 * 9 7 2 11 11 C 1.36342 * 119.83135 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.16134 * 0.02562 * 11 10 9 13 13 N 1.38854 * 119.84123 * 179.97438 * 12 11 10 14 14 C 1.46500 * 120.00032 * 180.02562 * 13 12 11 15 15 H 1.09005 * 110.54072 * 327.61546 * 14 13 12 16 16 C 1.54964 * 110.53216 * 90.24657 * 14 13 12 17 17 C 1.54888 * 102.78282 * 156.56937 * 16 14 13 18 18 C 1.54273 * 104.19112 * 322.08566 * 17 16 14 19 19 C 1.53870 * 106.60023 * 23.60962 * 18 17 16 20 20 H 1.09004 * 110.03226 * 240.66646 * 19 18 17 21 21 C 1.53003 * 110.03448 * 119.28421 * 19 18 17 22 22 N 1.46907 * 109.46796 * 67.08933 * 21 19 18 23 23 C 1.39565 * 120.31754 * 0.25711 * 12 11 10 24 24 C 1.36350 * 120.15887 * 359.48007 * 23 12 11 25 25 H 0.96999 * 120.00218 * 0.02562 * 1 2 3 26 26 H 1.07990 * 120.08672 * 0.04769 * 10 9 7 27 27 H 1.07997 * 119.92140 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00155 * 0.02562 * 13 12 11 29 29 H 1.09003 * 110.71917 * 38.24940 * 16 14 13 30 30 H 1.08995 * 110.92465 * 274.97986 * 16 14 13 31 31 H 1.08994 * 110.48954 * 203.41079 * 17 16 14 32 32 H 1.08991 * 110.48886 * 80.75827 * 17 16 14 33 33 H 1.09005 * 110.03288 * 264.32526 * 18 17 16 34 34 H 1.09000 * 110.07232 * 142.91720 * 18 17 16 35 35 H 1.08994 * 109.47308 * 187.08621 * 21 19 18 36 36 H 1.08999 * 109.47015 * 307.09528 * 21 19 18 37 37 H 1.00904 * 111.00072 * 56.04955 * 22 21 19 38 38 H 1.00897 * 110.99443 * 179.97438 * 22 21 19 39 39 H 1.07998 * 119.92383 * 179.72101 * 23 12 11 40 40 H 1.07993 * 120.07988 * 180.27670 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2780 2.7464 -0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0084 -1.2113 0.0005 8 1 3.0489 -1.2340 0.2889 9 6 1.3542 -2.4040 -0.3759 10 6 1.8266 -3.6472 0.0890 11 6 1.1901 -4.7953 -0.2791 12 6 0.0735 -4.7411 -1.1148 13 7 -0.5694 -5.9146 -1.4859 14 6 -1.7414 -5.8617 -2.3634 15 1 -2.3103 -4.9488 -2.1871 16 6 -1.3123 -5.9547 -3.8495 17 6 -2.5903 -6.4891 -4.5424 18 6 -3.1717 -7.5019 -3.5343 19 6 -2.6324 -7.1028 -2.1495 20 1 -2.0429 -7.9177 -1.7293 21 6 -3.7933 -6.7595 -1.2139 22 7 -4.5739 -7.9728 -0.9367 23 6 -0.3965 -3.5135 -1.5838 24 6 0.2269 -2.3569 -1.2196 25 1 -0.4850 0.8400 -0.0004 26 1 2.6905 -3.6907 0.7355 27 1 1.5507 -5.7491 0.0767 28 1 -0.2425 -6.7693 -1.1643 29 1 -0.4861 -6.6555 -3.9693 30 1 -1.0435 -4.9729 -4.2392 31 1 -2.3372 -6.9857 -5.4790 32 1 -3.2966 -5.6779 -4.7183 33 1 -2.8432 -8.5103 -3.7864 34 1 -4.2605 -7.4520 -3.5395 35 1 -3.4006 -6.3588 -0.2795 36 1 -4.4340 -6.0157 -1.6876 37 1 -3.9878 -8.7009 -0.5564 38 1 -5.3469 -7.7723 -0.3200 39 1 -1.2583 -3.4793 -2.2338 40 1 -0.1405 -1.4074 -1.5797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089149083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:31 Heat of formation + Delta-G solvation = 5.840454 kcal Electronic energy + Delta-G solvation = -19179.987371 eV Core-core repulsion = 16379.023145 eV Total energy + Delta-G solvation = -2800.964226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.08744 -37.42530 -34.59788 -33.85605 -32.50235 -29.46967 -29.08509 -28.55482 -26.84885 -24.30879 -23.14573 -21.43520 -20.63425 -19.79745 -19.37075 -17.19923 -16.40869 -16.08452 -15.37208 -14.88931 -14.73747 -14.41486 -14.00415 -13.59350 -13.42320 -12.93107 -12.62684 -12.27745 -12.11057 -11.98918 -11.58514 -11.48092 -11.00505 -10.89445 -10.85896 -10.82639 -10.76350 -10.47424 -10.39806 -10.34928 -9.69556 -9.25766 -9.17562 -8.77914 -8.50588 -7.47584 -6.62800 -6.36082 -4.01821 2.94209 3.11566 3.14878 3.18189 3.37387 4.06349 4.27325 4.40368 4.72795 4.83646 4.88230 4.98666 5.31329 5.49547 5.59844 5.66279 5.68702 5.77918 5.84655 5.89630 6.01504 6.09467 6.21182 6.27781 6.33595 6.42119 6.43817 6.51373 6.95079 6.98678 6.99816 7.21840 7.29716 7.37249 7.58875 7.70786 7.86248 8.16612 8.31752 8.52535 8.72764 8.82400 9.07499 9.17083 10.38736 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.031073 B = 0.004227 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.900678 B = 6623.192341 C = 6665.089452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.469 4.469 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.187 4.187 11 C -0.160 4.160 12 C 0.094 3.906 13 N -0.753 5.753 14 C 0.165 3.835 15 H 0.080 0.920 16 C -0.139 4.139 17 C -0.127 4.127 18 C -0.106 4.106 19 C -0.095 4.095 20 H 0.069 0.931 21 C 0.067 3.933 22 N -0.851 5.851 23 C -0.164 4.164 24 C -0.124 4.124 25 H 0.276 0.724 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.382 0.618 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.337 0.663 38 H 0.339 0.661 39 H 0.088 0.912 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 -10.875 -4.521 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.500 4.500 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.208 4.208 11 C -0.183 4.183 12 C -0.003 4.003 13 N -0.387 5.387 14 C 0.057 3.943 15 H 0.098 0.902 16 C -0.179 4.179 17 C -0.165 4.165 18 C -0.144 4.144 19 C -0.114 4.114 20 H 0.087 0.913 21 C -0.064 4.064 22 N -0.379 5.379 23 C -0.186 4.186 24 C -0.144 4.144 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.214 0.786 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.106 0.894 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.200 -10.599 -5.373 13.894 hybrid contribution 0.777 0.641 1.229 1.589 sum -6.423 -9.958 -4.144 12.553 Atomic orbital electron populations 1.69845 1.07362 1.28686 1.37707 1.25780 0.94638 1.00834 0.92709 0.86473 0.80147 0.80885 0.79736 1.19089 1.20587 1.19283 1.19340 0.97901 0.91418 1.41310 0.91023 1.17483 0.92482 0.91949 0.90945 1.20535 1.02693 0.92649 1.04879 1.19801 0.97992 0.96987 1.03481 1.17352 0.95660 0.85756 1.01540 1.43938 1.32490 1.05645 1.56582 1.21471 0.86816 0.97074 0.88954 0.90250 1.23007 0.97099 1.01303 0.96442 1.22354 0.97444 0.98681 0.98029 1.22027 1.00782 0.98375 0.93243 1.22001 0.95519 0.97937 0.95988 0.91267 1.21894 0.94529 0.91955 0.98002 1.58780 1.14307 1.10428 1.54407 1.20117 1.01524 0.91920 1.05002 1.20937 0.98193 0.96441 0.98834 0.91299 0.89151 0.89733 0.78560 0.91598 0.91474 0.92093 0.91827 0.92397 0.91033 0.95062 0.90980 0.85100 0.84960 0.89351 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.61 10.97 55.54 0.61 -21.00 16 2 C 0.08 1.96 5.13 -17.34 -0.09 1.87 16 3 Si 0.90 19.36 29.59 -169.99 -5.03 14.33 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.47 -12.84 9.03 -37.87 -0.34 -13.19 16 8 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.07 2.02 5.57 -106.79 -0.60 1.43 16 10 C -0.19 -4.68 9.74 -39.26 -0.38 -5.07 16 11 C -0.16 -3.62 9.82 -39.77 -0.39 -4.01 16 12 C 0.09 2.03 6.67 -83.69 -0.56 1.47 16 13 N -0.75 -12.92 5.30 -50.39 -0.27 -13.18 16 14 C 0.16 2.44 2.44 -66.23 -0.16 2.28 16 15 H 0.08 1.31 6.09 -51.93 -0.32 1.00 16 16 C -0.14 -1.93 6.58 -24.70 -0.16 -2.09 16 17 C -0.13 -1.45 6.83 -25.07 -0.17 -1.63 16 18 C -0.11 -1.18 6.28 -25.61 -0.16 -1.34 16 19 C -0.09 -1.14 2.82 -89.50 -0.25 -1.40 16 20 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 21 C 0.07 0.78 5.80 -3.82 -0.02 0.76 16 22 N -0.85 -8.30 9.35 -10.37 -0.10 -8.40 16 23 C -0.16 -3.83 9.14 -39.77 -0.36 -4.20 16 24 C -0.12 -3.27 8.64 -39.26 -0.34 -3.61 16 25 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 26 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.38 5.93 8.37 -40.82 -0.34 5.58 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.80 7.60 -51.93 -0.39 0.41 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.34 2.98 8.99 -39.29 -0.35 2.62 16 38 H 0.34 2.83 9.08 -39.29 -0.36 2.48 16 39 H 0.09 1.90 6.17 -52.49 -0.32 1.57 16 40 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -27.91 320.53 -10.11 -38.02 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -6.17 Total: 14.11 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -3.99 Total: -28.71 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.24 Total: -42.58 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.91 -10.11 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089149083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.861 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds