Wall clock time and date at job start Mon Mar 30 2020 06:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86792 * 119.99923 * 2 1 4 4 H 1.48503 * 109.46918 * 239.99683 * 3 2 1 5 5 H 1.48497 * 109.47457 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47319 * 119.99812 * 3 2 1 7 7 C 1.39867 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 197.95524 * 7 2 1 9 9 C 1.41144 * 119.99799 * 17.96337 * 7 2 1 10 10 C 1.40889 * 120.14916 * 204.60666 * 9 7 2 11 11 C 1.36342 * 119.83135 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.16134 * 0.02562 * 11 10 9 13 13 N 1.38854 * 119.84123 * 179.97438 * 12 11 10 14 14 C 1.46500 * 120.00032 * 180.02562 * 13 12 11 15 15 H 1.09005 * 110.54072 * 327.61546 * 14 13 12 16 16 C 1.54964 * 110.53216 * 90.24657 * 14 13 12 17 17 C 1.54888 * 102.78282 * 156.56937 * 16 14 13 18 18 C 1.54273 * 104.19112 * 322.08566 * 17 16 14 19 19 C 1.53870 * 106.60023 * 23.60962 * 18 17 16 20 20 H 1.09004 * 110.03226 * 240.66646 * 19 18 17 21 21 C 1.53003 * 110.03448 * 119.28421 * 19 18 17 22 22 N 1.46907 * 109.46796 * 67.08933 * 21 19 18 23 23 C 1.39565 * 120.31754 * 0.25711 * 12 11 10 24 24 C 1.36350 * 120.15887 * 359.48007 * 23 12 11 25 25 H 0.96999 * 120.00218 * 0.02562 * 1 2 3 26 26 H 1.07990 * 120.08672 * 0.04769 * 10 9 7 27 27 H 1.07997 * 119.92140 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00155 * 0.02562 * 13 12 11 29 29 H 1.09003 * 110.71917 * 38.24940 * 16 14 13 30 30 H 1.08995 * 110.92465 * 274.97986 * 16 14 13 31 31 H 1.08994 * 110.48954 * 203.41079 * 17 16 14 32 32 H 1.08991 * 110.48886 * 80.75827 * 17 16 14 33 33 H 1.09005 * 110.03288 * 264.32526 * 18 17 16 34 34 H 1.09000 * 110.07232 * 142.91720 * 18 17 16 35 35 H 1.08994 * 109.47308 * 187.08621 * 21 19 18 36 36 H 1.08999 * 109.47015 * 307.09528 * 21 19 18 37 37 H 1.00904 * 111.00072 * 56.04955 * 22 21 19 38 38 H 1.00897 * 110.99443 * 179.97438 * 22 21 19 39 39 H 1.07998 * 119.92383 * 179.72101 * 23 12 11 40 40 H 1.07993 * 120.07988 * 180.27670 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2780 2.7464 -0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0084 -1.2113 0.0005 8 1 3.0489 -1.2340 0.2889 9 6 1.3542 -2.4040 -0.3759 10 6 1.8266 -3.6472 0.0890 11 6 1.1901 -4.7953 -0.2791 12 6 0.0735 -4.7411 -1.1148 13 7 -0.5694 -5.9146 -1.4859 14 6 -1.7414 -5.8617 -2.3634 15 1 -2.3103 -4.9488 -2.1871 16 6 -1.3123 -5.9547 -3.8495 17 6 -2.5903 -6.4891 -4.5424 18 6 -3.1717 -7.5019 -3.5343 19 6 -2.6324 -7.1028 -2.1495 20 1 -2.0429 -7.9177 -1.7293 21 6 -3.7933 -6.7595 -1.2139 22 7 -4.5739 -7.9728 -0.9367 23 6 -0.3965 -3.5135 -1.5838 24 6 0.2269 -2.3569 -1.2196 25 1 -0.4850 0.8400 -0.0004 26 1 2.6905 -3.6907 0.7355 27 1 1.5507 -5.7491 0.0767 28 1 -0.2425 -6.7693 -1.1643 29 1 -0.4861 -6.6555 -3.9693 30 1 -1.0435 -4.9729 -4.2392 31 1 -2.3372 -6.9857 -5.4790 32 1 -3.2966 -5.6779 -4.7183 33 1 -2.8432 -8.5103 -3.7864 34 1 -4.2605 -7.4520 -3.5395 35 1 -3.4006 -6.3588 -0.2795 36 1 -4.4340 -6.0157 -1.6876 37 1 -3.9878 -8.7009 -0.5564 38 1 -5.3469 -7.7723 -0.3200 39 1 -1.2583 -3.4793 -2.2338 40 1 -0.1405 -1.4074 -1.5797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089149083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:30 Heat of formation + Delta-G solvation = -11.027919 kcal Electronic energy + Delta-G solvation = -19180.718839 eV Core-core repulsion = 16379.023145 eV Total energy + Delta-G solvation = -2801.695694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39501 -39.06505 -36.15492 -35.02142 -34.14517 -31.36434 -30.70789 -29.62760 -28.24318 -26.02764 -24.24838 -23.17413 -22.20915 -21.14198 -20.55611 -19.15581 -17.90170 -17.27716 -16.83325 -16.42358 -15.85997 -15.67032 -15.37195 -14.87143 -14.59554 -14.56495 -14.34303 -13.85221 -13.73006 -13.45421 -13.17766 -12.95954 -12.73933 -12.41284 -12.31016 -12.00635 -11.88435 -11.81471 -11.64144 -11.58236 -11.28150 -11.13334 -11.01111 -10.25763 -9.61367 -9.40230 -8.54976 -8.14279 -6.00540 1.11449 1.19028 1.39548 1.50444 1.59968 2.27126 2.84135 2.89391 3.45891 3.74209 3.88072 3.89087 4.01961 4.32584 4.40587 4.49585 4.49882 4.60445 4.60861 4.66579 4.78380 4.90572 4.97573 5.02945 5.13160 5.16543 5.26121 5.26381 5.36786 5.40482 5.46596 5.52066 5.71576 5.82411 5.96954 6.18619 6.19124 6.39977 6.58950 6.68355 6.88947 7.08482 7.16074 7.33525 8.48177 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.031073 B = 0.004227 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.900678 B = 6623.192341 C = 6665.089452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.033 3.967 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.035 3.965 10 C -0.196 4.196 11 C -0.167 4.167 12 C 0.116 3.884 13 N -0.741 5.741 14 C 0.158 3.842 15 H 0.061 0.939 16 C -0.137 4.137 17 C -0.120 4.120 18 C -0.098 4.098 19 C -0.085 4.085 20 H 0.078 0.922 21 C 0.072 3.928 22 N -0.846 5.846 23 C -0.173 4.173 24 C -0.143 4.143 25 H 0.282 0.718 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.395 0.605 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.012 0.988 36 H 0.067 0.933 37 H 0.345 0.655 38 H 0.348 0.652 39 H 0.102 0.898 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.298 -12.644 -5.092 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.032 3.968 10 C -0.216 4.216 11 C -0.190 4.190 12 C 0.017 3.983 13 N -0.375 5.375 14 C 0.051 3.949 15 H 0.079 0.921 16 C -0.177 4.177 17 C -0.158 4.158 18 C -0.136 4.136 19 C -0.105 4.105 20 H 0.096 0.904 21 C -0.059 4.059 22 N -0.376 5.376 23 C -0.195 4.195 24 C -0.163 4.163 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.135 0.865 28 H 0.229 0.771 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.030 0.970 36 H 0.086 0.914 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.120 0.880 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.793 -12.427 -5.951 15.829 hybrid contribution 0.872 0.990 1.379 1.908 sum -6.921 -11.437 -4.572 14.128 Atomic orbital electron populations 1.69913 1.08774 1.29828 1.38567 1.26596 0.95427 1.04054 0.91805 0.85361 0.78790 0.76333 0.79805 1.18787 1.19428 1.18607 1.19581 0.98035 0.92843 1.43515 0.91441 1.17803 0.93629 0.93032 0.92340 1.20749 1.03060 0.92905 1.04912 1.20099 0.97930 0.97590 1.03334 1.17437 0.94768 0.86688 0.99450 1.43972 1.32552 1.04700 1.56239 1.21633 0.86199 0.97877 0.89182 0.92138 1.22943 0.98484 1.00547 0.95720 1.22326 0.95998 0.98899 0.98616 1.21975 1.00832 0.98775 0.92037 1.21903 0.95071 0.96483 0.96993 0.90412 1.21767 0.94508 0.92667 0.96995 1.58743 1.14355 1.09608 1.54932 1.20243 1.01931 0.91906 1.05456 1.20860 0.98958 0.96680 0.99851 0.90777 0.88612 0.86514 0.77058 0.91474 0.93302 0.90472 0.91699 0.91130 0.90766 0.96954 0.91437 0.84242 0.83938 0.87976 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.62 10.97 21.82 0.24 -46.38 16 2 C 0.03 1.76 5.13 85.23 0.44 2.20 16 3 Si 0.98 40.55 29.59 68.60 2.03 42.58 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.51 -29.00 9.03 23.38 0.21 -28.78 16 8 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 9 C 0.03 1.97 5.57 -21.27 -0.12 1.85 16 10 C -0.20 -9.94 9.74 22.48 0.22 -9.72 16 11 C -0.17 -7.37 9.82 22.15 0.22 -7.16 16 12 C 0.12 4.93 6.67 38.67 0.26 5.19 16 13 N -0.74 -24.00 5.30 -313.34 -1.66 -25.66 16 14 C 0.16 4.43 2.44 46.09 0.11 4.54 16 15 H 0.06 1.96 6.09 -2.38 -0.01 1.95 16 16 C -0.14 -3.59 6.58 31.91 0.21 -3.38 16 17 C -0.12 -2.44 6.83 31.67 0.22 -2.22 16 18 C -0.10 -1.86 6.28 31.32 0.20 -1.67 16 19 C -0.08 -1.83 2.82 -10.07 -0.03 -1.86 16 20 H 0.08 1.59 7.73 -2.39 -0.02 1.57 16 21 C 0.07 1.55 5.80 86.30 0.50 2.05 16 22 N -0.85 -14.37 9.35 -186.71 -1.75 -16.12 16 23 C -0.17 -8.22 9.14 22.15 0.20 -8.02 16 24 C -0.14 -7.86 8.64 22.48 0.19 -7.66 16 25 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 26 H 0.10 4.60 8.06 -2.92 -0.02 4.58 16 27 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 28 H 0.39 11.07 8.37 -92.71 -0.78 10.30 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.07 1.42 7.60 -2.39 -0.02 1.40 16 35 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.34 5.10 8.99 -89.69 -0.81 4.29 16 38 H 0.35 5.03 9.08 -89.70 -0.81 4.22 16 39 H 0.10 4.46 6.17 -2.91 -0.02 4.44 16 40 H 0.10 5.62 6.16 -2.91 -0.02 5.61 16 Total: -1.00 -61.70 320.53 0.35 -61.35 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: -1.34 Total: 38.87 kcal Atomic # 6 Polarization: -57.48 SS G_CDS: 2.83 Total: -54.65 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -3.17 Total: -88.16 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -61.70 0.35 -61.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089149083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.325 kcal (2) G-P(sol) polarization free energy of solvation -61.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds