Wall clock time and date at job start Mon Mar 30 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86809 * 119.99896 * 2 1 4 4 H 1.48497 * 109.46815 * 239.99971 * 3 2 1 5 5 H 1.48496 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47240 * 120.00109 * 3 2 1 7 7 C 1.39866 * 120.00494 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00619 * 196.70860 * 7 2 1 9 9 C 1.41140 * 119.99478 * 16.98822 * 7 2 1 10 10 C 1.40889 * 120.15309 * 205.17054 * 9 7 2 11 11 C 1.36342 * 119.83420 * 179.76023 * 10 9 7 12 12 C 1.39561 * 120.16042 * 0.48687 * 11 10 9 13 13 N 1.38856 * 119.84173 * 179.73768 * 12 11 10 14 14 C 1.46502 * 120.00064 * 0.02926 * 13 12 11 15 15 H 1.09000 * 110.43816 * 36.07997 * 14 13 12 16 16 C 1.54269 * 110.48343 * 273.54270 * 14 13 12 17 17 C 1.53878 * 106.60103 * 217.70843 * 16 14 13 18 18 C 1.54270 * 106.59549 * 0.02562 * 17 16 14 19 19 C 1.54886 * 104.19793 * 23.60556 * 18 17 16 20 20 H 1.09004 * 110.75589 * 80.36991 * 19 18 17 21 21 C 1.52999 * 110.76101 * 203.74352 * 19 18 17 22 22 N 1.46903 * 109.47087 * 288.33469 * 21 19 18 23 23 C 1.39562 * 120.31946 * 359.76779 * 12 11 10 24 24 C 1.36343 * 120.15966 * 359.97438 * 23 12 11 25 25 H 0.97006 * 120.00330 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.07815 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.91943 * 180.20860 * 11 10 9 28 28 H 0.97003 * 120.00292 * 180.02562 * 13 12 11 29 29 H 1.08998 * 110.03342 * 336.99931 * 16 14 13 30 30 H 1.09007 * 110.03221 * 98.37502 * 16 14 13 31 31 H 1.09000 * 110.02831 * 119.28131 * 17 16 14 32 32 H 1.08995 * 110.03173 * 240.67049 * 17 16 14 33 33 H 1.08994 * 110.48934 * 142.28499 * 18 17 16 34 34 H 1.09004 * 110.48281 * 264.79723 * 18 17 16 35 35 H 1.09005 * 109.46488 * 48.32849 * 21 19 18 36 36 H 1.08994 * 109.47574 * 168.32887 * 21 19 18 37 37 H 1.00897 * 111.00010 * 179.97438 * 22 21 19 38 38 H 1.00905 * 110.99710 * 303.94702 * 22 21 19 39 39 H 1.08001 * 119.92378 * 179.97438 * 23 12 11 40 40 H 1.08000 * 120.08528 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0968 1.6965 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0542 -1.2309 0.2694 9 6 1.3489 -2.4070 -0.3561 10 6 1.8212 -3.6453 0.1220 11 6 1.1762 -4.7960 -0.2226 12 6 0.0569 -4.7502 -1.0550 13 7 -0.5917 -5.9267 -1.4061 14 6 -0.1011 -7.2120 -0.9026 15 1 0.2748 -7.1038 0.1148 16 6 0.9997 -7.7698 -1.8283 17 6 0.7929 -9.2935 -1.8887 18 6 -0.4268 -9.6082 -0.9981 19 6 -1.2221 -8.2797 -0.9596 20 1 -1.8221 -8.1624 -1.8621 21 6 -2.1011 -8.2099 0.2907 22 7 -3.2221 -9.1495 0.1543 23 6 -0.4134 -3.5276 -1.5366 24 6 0.2185 -2.3685 -1.1960 25 1 -0.4851 0.8401 0.0004 26 1 2.6899 -3.6826 0.7626 27 1 1.5350 -5.7457 0.1458 28 1 -1.3697 -5.8976 -1.9848 29 1 0.9024 -7.3400 -2.8252 30 1 1.9835 -7.5418 -1.4181 31 1 0.5951 -9.6029 -2.9150 32 1 1.6766 -9.8055 -1.5082 33 1 -1.0291 -10.4006 -1.4422 34 1 -0.1045 -9.8914 0.0040 35 1 -1.5089 -8.4755 1.1664 36 1 -2.4878 -7.1974 0.4070 37 1 -3.8177 -9.1225 0.9682 38 1 -3.7490 -8.9641 -0.6860 39 1 -1.2799 -3.4996 -2.1807 40 1 -0.1462 -1.4231 -1.5697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089149084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:33 Heat of formation + Delta-G solvation = 5.029871 kcal Electronic energy + Delta-G solvation = -19116.952514 eV Core-core repulsion = 16315.953138 eV Total energy + Delta-G solvation = -2800.999376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.07414 -37.40543 -34.58388 -33.91984 -32.49488 -29.63902 -29.00710 -28.50397 -26.88223 -24.27191 -23.24730 -21.31805 -20.54590 -19.87889 -19.51099 -17.17310 -16.23554 -16.12411 -15.48159 -15.06108 -14.52238 -14.44959 -14.00952 -13.79904 -13.40192 -12.96032 -12.52360 -12.37565 -12.11497 -11.89765 -11.60649 -11.43671 -11.05434 -10.98601 -10.89791 -10.86632 -10.82469 -10.51006 -10.39852 -10.25284 -9.65570 -9.28680 -9.19343 -8.77048 -8.50874 -7.47365 -6.61568 -6.36256 -4.02156 2.94182 3.11736 3.14931 3.18346 3.37303 4.06607 4.28567 4.35875 4.69930 4.81789 4.87025 4.96238 5.28382 5.48883 5.53056 5.63798 5.69404 5.76408 5.84149 5.89280 5.95603 6.07602 6.15920 6.28375 6.32924 6.34357 6.45223 6.51709 6.89761 6.98999 7.08262 7.22192 7.28979 7.33838 7.62662 7.68413 7.82218 8.16521 8.36056 8.52540 8.70402 8.82361 9.07787 9.17099 10.39726 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037919 B = 0.004078 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.237351 B = 6863.667174 C = 7242.007037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.075 3.925 10 C -0.188 4.188 11 C -0.160 4.160 12 C 0.095 3.905 13 N -0.753 5.753 14 C 0.166 3.834 15 H 0.076 0.924 16 C -0.141 4.141 17 C -0.126 4.126 18 C -0.104 4.104 19 C -0.095 4.095 20 H 0.074 0.926 21 C 0.068 3.932 22 N -0.851 5.851 23 C -0.165 4.165 24 C -0.122 4.122 25 H 0.276 0.724 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.383 0.617 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.339 0.661 38 H 0.337 0.663 39 H 0.085 0.915 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 -13.485 -2.082 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.500 4.500 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.208 4.208 11 C -0.182 4.182 12 C -0.002 4.002 13 N -0.387 5.387 14 C 0.058 3.942 15 H 0.094 0.906 16 C -0.180 4.180 17 C -0.164 4.164 18 C -0.142 4.142 19 C -0.114 4.114 20 H 0.092 0.908 21 C -0.062 4.062 22 N -0.380 5.380 23 C -0.187 4.187 24 C -0.142 4.142 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.215 0.785 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.103 0.897 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.222 -13.962 -1.982 14.465 hybrid contribution -0.527 1.724 -0.110 1.806 sum -3.749 -12.238 -2.091 12.969 Atomic orbital electron populations 1.69840 1.07329 1.28640 1.37979 1.25780 0.94660 1.00811 0.92743 0.86465 0.80115 0.80889 0.79719 1.19110 1.20601 1.19286 1.19337 0.97467 0.91288 1.41882 0.91031 1.17483 0.92461 0.91988 0.90903 1.20573 1.02522 0.92794 1.04933 1.19879 0.97921 0.97048 1.03311 1.17346 0.95877 0.85189 1.01805 1.43939 1.34487 1.02484 1.57805 1.21438 0.92345 0.83146 0.97226 0.90613 1.22690 0.99858 0.94460 1.01023 1.22142 0.98157 0.96388 0.99685 1.22207 0.95636 0.96504 0.99864 1.22328 0.95995 0.95451 0.97637 0.90780 1.21795 0.92641 0.93734 0.98060 1.58763 1.14825 1.56708 1.07662 1.20037 1.01560 0.92029 1.05069 1.20911 0.98102 0.96278 0.98878 0.91325 0.89188 0.89419 0.78488 0.91489 0.91875 0.92323 0.92186 0.91563 0.91684 0.91059 0.94905 0.84954 0.85097 0.89674 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.69 10.96 55.54 0.61 -21.08 16 2 C 0.07 1.95 5.15 -17.34 -0.09 1.86 16 3 Si 0.90 19.40 29.59 -169.99 -5.03 14.37 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.47 -12.85 9.04 -37.87 -0.34 -13.19 16 8 H 0.07 1.90 7.90 -52.49 -0.41 1.48 16 9 C 0.07 2.03 5.57 -106.79 -0.59 1.44 16 10 C -0.19 -4.70 9.74 -39.26 -0.38 -5.08 16 11 C -0.16 -3.59 9.14 -39.77 -0.36 -3.96 16 12 C 0.09 2.05 6.67 -83.69 -0.56 1.49 16 13 N -0.75 -12.83 5.26 -50.42 -0.27 -13.10 16 14 C 0.17 2.40 2.23 -66.26 -0.15 2.25 16 15 H 0.08 1.20 6.49 -51.93 -0.34 0.87 16 16 C -0.14 -1.93 6.53 -25.61 -0.17 -2.09 16 17 C -0.13 -1.39 6.80 -25.61 -0.17 -1.57 16 18 C -0.10 -1.13 6.20 -25.07 -0.16 -1.28 16 19 C -0.09 -1.11 2.64 -88.62 -0.23 -1.34 16 20 H 0.07 0.86 8.02 -51.93 -0.42 0.45 16 21 C 0.07 0.78 6.23 -3.82 -0.02 0.76 16 22 N -0.85 -8.15 9.55 -10.37 -0.10 -8.25 16 23 C -0.17 -3.86 9.82 -39.77 -0.39 -4.25 16 24 C -0.12 -3.21 8.63 -39.26 -0.34 -3.55 16 25 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 26 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 27 H 0.09 1.78 6.24 -52.49 -0.33 1.45 16 28 H 0.38 5.98 8.53 -40.82 -0.35 5.63 16 29 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 30 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.71 7.94 -51.93 -0.41 0.29 16 35 H 0.07 0.84 7.99 -51.93 -0.41 0.43 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.34 2.79 9.08 -39.29 -0.36 2.43 16 38 H 0.34 2.90 8.99 -39.29 -0.35 2.55 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.12 3.22 6.19 -52.49 -0.32 2.89 16 LS Contribution 321.58 15.07 4.85 4.85 Total: -1.00 -27.93 321.58 -10.12 -38.05 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -6.22 Total: 13.69 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -3.96 Total: -28.52 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.24 Total: -42.43 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.93 -10.12 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089149084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.079 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds