Wall clock time and date at job start Mon Mar 30 2020 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86809 * 119.99896 * 2 1 4 4 H 1.48497 * 109.46815 * 239.99971 * 3 2 1 5 5 H 1.48496 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47240 * 120.00109 * 3 2 1 7 7 C 1.39866 * 120.00494 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00619 * 196.70860 * 7 2 1 9 9 C 1.41140 * 119.99478 * 16.98822 * 7 2 1 10 10 C 1.40889 * 120.15309 * 205.17054 * 9 7 2 11 11 C 1.36342 * 119.83420 * 179.76023 * 10 9 7 12 12 C 1.39561 * 120.16042 * 0.48687 * 11 10 9 13 13 N 1.38856 * 119.84173 * 179.73768 * 12 11 10 14 14 C 1.46502 * 120.00064 * 0.02926 * 13 12 11 15 15 H 1.09000 * 110.43816 * 36.07997 * 14 13 12 16 16 C 1.54269 * 110.48343 * 273.54270 * 14 13 12 17 17 C 1.53878 * 106.60103 * 217.70843 * 16 14 13 18 18 C 1.54270 * 106.59549 * 0.02562 * 17 16 14 19 19 C 1.54886 * 104.19793 * 23.60556 * 18 17 16 20 20 H 1.09004 * 110.75589 * 80.36991 * 19 18 17 21 21 C 1.52999 * 110.76101 * 203.74352 * 19 18 17 22 22 N 1.46903 * 109.47087 * 288.33469 * 21 19 18 23 23 C 1.39562 * 120.31946 * 359.76779 * 12 11 10 24 24 C 1.36343 * 120.15966 * 359.97438 * 23 12 11 25 25 H 0.97006 * 120.00330 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.07815 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.91943 * 180.20860 * 11 10 9 28 28 H 0.97003 * 120.00292 * 180.02562 * 13 12 11 29 29 H 1.08998 * 110.03342 * 336.99931 * 16 14 13 30 30 H 1.09007 * 110.03221 * 98.37502 * 16 14 13 31 31 H 1.09000 * 110.02831 * 119.28131 * 17 16 14 32 32 H 1.08995 * 110.03173 * 240.67049 * 17 16 14 33 33 H 1.08994 * 110.48934 * 142.28499 * 18 17 16 34 34 H 1.09004 * 110.48281 * 264.79723 * 18 17 16 35 35 H 1.09005 * 109.46488 * 48.32849 * 21 19 18 36 36 H 1.08994 * 109.47574 * 168.32887 * 21 19 18 37 37 H 1.00897 * 111.00010 * 179.97438 * 22 21 19 38 38 H 1.00905 * 110.99710 * 303.94702 * 22 21 19 39 39 H 1.08001 * 119.92378 * 179.97438 * 23 12 11 40 40 H 1.08000 * 120.08528 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0968 1.6965 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0542 -1.2309 0.2694 9 6 1.3489 -2.4070 -0.3561 10 6 1.8212 -3.6453 0.1220 11 6 1.1762 -4.7960 -0.2226 12 6 0.0569 -4.7502 -1.0550 13 7 -0.5917 -5.9267 -1.4061 14 6 -0.1011 -7.2120 -0.9026 15 1 0.2748 -7.1038 0.1148 16 6 0.9997 -7.7698 -1.8283 17 6 0.7929 -9.2935 -1.8887 18 6 -0.4268 -9.6082 -0.9981 19 6 -1.2221 -8.2797 -0.9596 20 1 -1.8221 -8.1624 -1.8621 21 6 -2.1011 -8.2099 0.2907 22 7 -3.2221 -9.1495 0.1543 23 6 -0.4134 -3.5276 -1.5366 24 6 0.2185 -2.3685 -1.1960 25 1 -0.4851 0.8401 0.0004 26 1 2.6899 -3.6826 0.7626 27 1 1.5350 -5.7457 0.1458 28 1 -1.3697 -5.8976 -1.9848 29 1 0.9024 -7.3400 -2.8252 30 1 1.9835 -7.5418 -1.4181 31 1 0.5951 -9.6029 -2.9150 32 1 1.6766 -9.8055 -1.5082 33 1 -1.0291 -10.4006 -1.4422 34 1 -0.1045 -9.8914 0.0040 35 1 -1.5089 -8.4755 1.1664 36 1 -2.4878 -7.1974 0.4070 37 1 -3.8177 -9.1225 0.9682 38 1 -3.7490 -8.9641 -0.6860 39 1 -1.2799 -3.4996 -2.1807 40 1 -0.1462 -1.4231 -1.5697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089149084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:32 Heat of formation + Delta-G solvation = -11.843519 kcal Electronic energy + Delta-G solvation = -19117.684199 eV Core-core repulsion = 16315.953138 eV Total energy + Delta-G solvation = -2801.731061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37646 -39.03107 -36.12600 -35.03536 -34.16249 -31.48365 -30.57665 -29.65998 -28.24977 -26.01051 -24.31920 -23.00509 -22.21814 -20.97824 -20.82425 -19.10653 -17.71482 -17.39698 -16.81915 -16.59065 -15.72084 -15.57490 -15.38726 -14.87560 -14.74341 -14.60168 -14.20058 -13.93590 -13.69647 -13.51870 -13.03733 -12.96696 -12.73376 -12.52322 -12.34737 -11.97796 -11.92763 -11.80615 -11.58614 -11.51251 -11.25629 -11.17122 -11.03568 -10.25950 -9.58386 -9.40123 -8.53892 -8.14440 -6.00965 1.10863 1.19458 1.39661 1.50555 1.59838 2.27364 2.84507 2.89885 3.44990 3.72682 3.86832 3.90529 4.03452 4.31790 4.42928 4.44903 4.54110 4.57525 4.63225 4.69441 4.78278 4.89914 4.97835 5.01031 5.17427 5.18301 5.23784 5.29876 5.33726 5.37925 5.46738 5.54472 5.74633 5.80381 5.93527 6.18505 6.20613 6.41744 6.59950 6.69025 6.89790 7.08735 7.14643 7.31829 8.48971 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037919 B = 0.004078 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.237351 B = 6863.667174 C = 7242.007037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.033 3.967 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.035 3.965 10 C -0.197 4.197 11 C -0.166 4.166 12 C 0.118 3.882 13 N -0.742 5.742 14 C 0.160 3.840 15 H 0.064 0.936 16 C -0.139 4.139 17 C -0.118 4.118 18 C -0.097 4.097 19 C -0.084 4.084 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.848 5.848 23 C -0.177 4.177 24 C -0.140 4.140 25 H 0.282 0.718 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.393 0.607 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.015 0.985 37 H 0.347 0.653 38 H 0.345 0.655 39 H 0.106 0.894 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 -15.305 -2.492 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.540 4.540 8 H 0.085 0.915 9 C 0.032 3.968 10 C -0.217 4.217 11 C -0.188 4.188 12 C 0.019 3.981 13 N -0.375 5.375 14 C 0.053 3.947 15 H 0.082 0.918 16 C -0.179 4.179 17 C -0.156 4.156 18 C -0.135 4.135 19 C -0.104 4.104 20 H 0.099 0.901 21 C -0.058 4.058 22 N -0.378 5.378 23 C -0.199 4.199 24 C -0.160 4.160 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.227 0.773 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.124 0.876 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.705 -15.839 -2.400 16.443 hybrid contribution -0.458 2.072 -0.002 2.122 sum -4.164 -13.767 -2.402 14.582 Atomic orbital electron populations 1.69906 1.08709 1.29784 1.38803 1.26590 0.95466 1.04008 0.91840 0.85354 0.78765 0.76344 0.79774 1.18780 1.19418 1.18681 1.19573 0.97571 0.92714 1.44133 0.91513 1.17796 0.93663 0.92960 0.92350 1.20766 1.02882 0.93090 1.04992 1.20098 0.98036 0.97287 1.03373 1.17421 0.94883 0.86245 0.99561 1.43995 1.34192 1.02097 1.57257 1.21635 0.93977 0.82496 0.96612 0.91829 1.22631 0.98823 0.96519 0.99900 1.22099 0.98800 0.94160 1.00581 1.22171 0.95343 0.95979 1.00019 1.22242 0.95254 0.94812 0.98065 0.90067 1.21674 0.93185 0.93164 0.97757 1.58729 1.14801 1.55680 1.08558 1.20232 1.02177 0.91884 1.05588 1.20849 0.98769 0.96634 0.99763 0.90795 0.88827 0.87005 0.77297 0.92501 0.92899 0.91207 0.91150 0.90370 0.91558 0.91426 0.96715 0.83969 0.84259 0.87582 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.56 10.96 21.82 0.24 -46.32 16 2 C 0.03 1.74 5.15 85.23 0.44 2.18 16 3 Si 0.98 40.56 29.59 68.60 2.03 42.59 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.51 -29.02 9.04 23.38 0.21 -28.81 16 8 H 0.07 3.70 7.90 -2.91 -0.02 3.67 16 9 C 0.04 1.98 5.57 -21.27 -0.12 1.87 16 10 C -0.20 -10.07 9.74 22.48 0.22 -9.85 16 11 C -0.17 -7.40 9.14 22.15 0.20 -7.20 16 12 C 0.12 5.02 6.67 38.67 0.26 5.28 16 13 N -0.74 -23.95 5.26 -313.44 -1.65 -25.60 16 14 C 0.16 4.28 2.23 46.07 0.10 4.39 16 15 H 0.06 1.91 6.49 -2.39 -0.02 1.89 16 16 C -0.14 -3.51 6.53 31.32 0.20 -3.31 16 17 C -0.12 -2.25 6.80 31.32 0.21 -2.04 16 18 C -0.10 -1.77 6.20 31.67 0.20 -1.58 16 19 C -0.08 -1.75 2.64 -9.50 -0.03 -1.77 16 20 H 0.08 1.61 8.02 -2.38 -0.02 1.60 16 21 C 0.07 1.52 6.23 86.30 0.54 2.06 16 22 N -0.85 -13.99 9.55 -186.72 -1.78 -15.77 16 23 C -0.18 -8.28 9.82 22.15 0.22 -8.07 16 24 C -0.14 -7.63 8.63 22.48 0.19 -7.43 16 25 H 0.28 14.19 8.30 -92.70 -0.77 13.42 16 26 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 27 H 0.11 4.39 6.24 -2.91 -0.02 4.37 16 28 H 0.39 11.37 8.53 -92.71 -0.79 10.58 16 29 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 30 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.22 7.94 -2.38 -0.02 1.20 16 35 H 0.07 1.46 7.99 -2.38 -0.02 1.44 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.35 4.89 9.08 -89.70 -0.81 4.08 16 38 H 0.34 4.95 8.99 -89.69 -0.81 4.14 16 39 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 40 H 0.10 5.66 6.19 -2.91 -0.02 5.64 16 Total: -1.00 -61.53 321.58 0.33 -61.19 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -1.36 Total: 38.22 kcal Atomic # 6 Polarization: -57.15 SS G_CDS: 2.85 Total: -54.30 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -3.19 Total: -87.70 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -61.53 0.33 -61.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089149084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.347 kcal (2) G-P(sol) polarization free energy of solvation -61.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds