Wall clock time and date at job start Mon Mar 30 2020 06:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48501 * 109.47167 * 239.99914 * 3 2 1 5 5 H 1.48506 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47323 * 119.99542 * 3 2 1 7 7 C 1.39865 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00139 * 197.96935 * 7 2 1 9 9 C 1.41135 * 119.99771 * 17.97879 * 7 2 1 10 10 C 1.40892 * 120.15332 * 204.60829 * 9 7 2 11 11 C 1.36335 * 119.83523 * 179.97438 * 10 9 7 12 12 C 1.39565 * 120.16373 * 359.97438 * 11 10 9 13 13 N 1.38861 * 119.84187 * 180.02562 * 12 11 10 14 14 C 1.46494 * 119.99885 * 180.02562 * 13 12 11 15 15 H 1.08995 * 110.02143 * 326.38858 * 14 13 12 16 16 C 1.54269 * 110.07485 * 87.80968 * 14 13 12 17 17 C 1.54884 * 104.19975 * 142.91708 * 16 14 13 18 18 C 1.54898 * 102.74703 * 322.05737 * 17 16 14 19 19 C 1.53881 * 110.03223 * 204.99477 * 14 13 12 20 20 H 1.09002 * 110.02656 * 121.38258 * 19 14 13 21 21 C 1.52997 * 110.03278 * 0.02562 * 19 14 13 22 22 N 1.46893 * 109.47200 * 175.68616 * 21 19 14 23 23 C 1.39563 * 120.31418 * 0.27570 * 12 11 10 24 24 C 1.36340 * 120.15970 * 359.48370 * 23 12 11 25 25 H 0.97005 * 120.00355 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.08018 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.91659 * 180.02562 * 11 10 9 28 28 H 0.97008 * 119.99918 * 359.97438 * 13 12 11 29 29 H 1.09007 * 110.48142 * 261.59568 * 16 14 13 30 30 H 1.08997 * 110.48823 * 24.23097 * 16 14 13 31 31 H 1.08997 * 110.75943 * 80.36854 * 17 16 14 32 32 H 1.08996 * 110.76107 * 203.74210 * 17 16 14 33 33 H 1.08996 * 110.48025 * 279.26133 * 18 17 16 34 34 H 1.09000 * 110.48536 * 156.62401 * 18 17 16 35 35 H 1.09002 * 109.47150 * 295.69206 * 21 19 14 36 36 H 1.09001 * 109.46960 * 55.68567 * 21 19 14 37 37 H 1.00897 * 110.99862 * 56.04967 * 22 21 19 38 38 H 1.00903 * 110.99746 * 179.97438 * 22 21 19 39 39 H 1.07998 * 119.91774 * 179.72345 * 23 12 11 40 40 H 1.08004 * 120.07747 * 180.23355 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0488 -1.2340 0.2891 9 6 1.3543 -2.4038 -0.3762 10 6 1.8265 -3.6472 0.0886 11 6 1.1894 -4.7951 -0.2789 12 6 0.0718 -4.7407 -1.1131 13 7 -0.5723 -5.9140 -1.4829 14 6 -1.7453 -5.8609 -2.3587 15 1 -2.3186 -4.9554 -2.1601 16 6 -1.3045 -5.8936 -3.8367 17 6 -2.3880 -6.7503 -4.5374 18 6 -2.6906 -7.8461 -3.4853 19 6 -2.6266 -7.1024 -2.1354 20 1 -3.6276 -6.7993 -1.8282 21 6 -2.0021 -8.0033 -1.0680 22 7 -2.9025 -9.1302 -0.7904 23 6 -0.3984 -3.5130 -1.5815 24 6 0.2258 -2.3566 -1.2182 25 1 -0.4851 0.8401 -0.0004 26 1 2.6910 -3.6908 0.7345 27 1 1.5501 -5.7490 0.0770 28 1 -0.2450 -6.7689 -1.1618 29 1 -1.2874 -4.8859 -4.2520 30 1 -0.3257 -6.3634 -3.9326 31 1 -3.2781 -6.1555 -4.7424 32 1 -1.9979 -7.1923 -5.4542 33 1 -1.9356 -8.6313 -3.5245 34 1 -3.6849 -8.2635 -3.6443 35 1 -1.0453 -8.3825 -1.4271 36 1 -1.8457 -7.4296 -0.1545 37 1 -3.1145 -9.6401 -1.6349 38 1 -2.5119 -9.7406 -0.0883 39 1 -1.2611 -3.4786 -2.2303 40 1 -0.1415 -1.4070 -1.5785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089149085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:36 Heat of formation + Delta-G solvation = 14.777868 kcal Electronic energy + Delta-G solvation = -19289.102838 eV Core-core repulsion = 16488.526167 eV Total energy + Delta-G solvation = -2800.576671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.34082 -37.39511 -34.41805 -33.98212 -32.53761 -29.47495 -29.16609 -28.48620 -26.81891 -24.08909 -23.80979 -21.10843 -20.69395 -20.35867 -18.57772 -17.19027 -16.80888 -16.12708 -15.17916 -15.13775 -14.89331 -14.41739 -13.98861 -13.70416 -13.10649 -12.85904 -12.64496 -12.54757 -12.18329 -11.97734 -11.58545 -11.42646 -10.99722 -10.96595 -10.85860 -10.72576 -10.68362 -10.59924 -10.45248 -10.36902 -9.68393 -9.24583 -9.16793 -8.79602 -8.49742 -7.46021 -6.61335 -6.34845 -4.00416 2.95449 3.13057 3.15829 3.19040 3.38691 4.07397 4.23031 4.47186 4.65390 4.73951 4.81746 4.95879 5.31819 5.36203 5.55399 5.62063 5.63822 5.77189 5.78582 5.86030 5.95983 6.02601 6.06463 6.28694 6.33343 6.36699 6.37693 6.53659 6.96565 6.98559 7.01936 7.23191 7.29479 7.38621 7.60096 7.72077 7.87531 8.18028 8.33072 8.53837 8.73394 8.83296 9.08863 9.18527 10.40121 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035522 B = 0.004302 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.063941 B = 6507.445291 C = 6863.809075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.469 4.469 8 H 0.071 0.929 9 C 0.074 3.926 10 C -0.187 4.187 11 C -0.161 4.161 12 C 0.093 3.907 13 N -0.756 5.756 14 C 0.164 3.836 15 H 0.077 0.923 16 C -0.139 4.139 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.097 4.097 20 H 0.083 0.917 21 C 0.067 3.933 22 N -0.851 5.851 23 C -0.163 4.163 24 C -0.124 4.124 25 H 0.276 0.724 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.384 0.616 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.026 0.974 36 H 0.082 0.918 37 H 0.336 0.664 38 H 0.339 0.661 39 H 0.089 0.911 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 -12.532 -5.924 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.500 4.500 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.208 4.208 11 C -0.183 4.183 12 C -0.004 4.004 13 N -0.392 5.392 14 C 0.056 3.944 15 H 0.095 0.905 16 C -0.178 4.178 17 C -0.162 4.162 18 C -0.156 4.156 19 C -0.117 4.117 20 H 0.101 0.899 21 C -0.063 4.063 22 N -0.380 5.380 23 C -0.185 4.185 24 C -0.144 4.144 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.219 0.781 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.107 0.893 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.846 -11.696 -5.741 14.280 hybrid contribution 1.285 -0.084 -0.164 1.298 sum -4.561 -11.780 -5.906 13.944 Atomic orbital electron populations 1.69849 1.07346 1.28677 1.37654 1.25779 0.94636 1.00818 0.92732 0.86477 0.80146 0.80920 0.79713 1.19119 1.20588 1.19289 1.19332 0.97902 0.91431 1.41317 0.91046 1.17479 0.92488 0.91940 0.90950 1.20530 1.02695 0.92655 1.04881 1.19784 0.98013 0.96937 1.03548 1.17366 0.95605 0.85858 1.01563 1.44219 1.32406 1.05785 1.56806 1.21239 0.87059 0.97030 0.89044 0.90497 1.22945 0.98580 1.00048 0.96269 1.22455 0.99090 0.97117 0.97580 1.22412 1.00931 0.97697 0.94592 1.22041 1.00082 0.95134 0.94442 0.89874 1.21836 0.92748 0.92261 0.99498 1.58758 1.49835 1.14502 1.14920 1.20117 1.01453 0.91920 1.04991 1.20937 0.98166 0.96451 0.98851 0.91297 0.89174 0.89839 0.78121 0.91579 0.91375 0.91539 0.91948 0.92215 0.91755 0.95592 0.89991 0.85187 0.84912 0.89331 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.68 10.96 55.54 0.61 -21.07 16 2 C 0.08 1.97 5.13 -17.34 -0.09 1.88 16 3 Si 0.90 19.43 29.60 -169.99 -5.03 14.39 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.47 -12.88 9.03 -37.87 -0.34 -13.23 16 8 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.07 2.03 5.57 -106.79 -0.60 1.43 16 10 C -0.19 -4.70 9.74 -39.26 -0.38 -5.08 16 11 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 12 C 0.09 2.02 6.67 -83.69 -0.56 1.46 16 13 N -0.76 -12.93 4.54 -50.95 -0.23 -13.16 16 14 C 0.16 2.44 2.89 -66.81 -0.19 2.25 16 15 H 0.08 1.28 6.41 -51.93 -0.33 0.95 16 16 C -0.14 -1.90 6.53 -25.07 -0.16 -2.07 16 17 C -0.12 -1.34 6.91 -24.74 -0.17 -1.51 16 18 C -0.12 -1.20 5.53 -25.07 -0.14 -1.34 16 19 C -0.10 -1.18 3.15 -89.50 -0.28 -1.47 16 20 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 21 C 0.07 0.78 4.77 -3.83 -0.02 0.77 16 22 N -0.85 -8.45 9.62 -10.37 -0.10 -8.55 16 23 C -0.16 -3.82 9.13 -39.77 -0.36 -4.19 16 24 C -0.12 -3.28 8.64 -39.27 -0.34 -3.62 16 25 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 26 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 27 H 0.08 1.67 8.06 -52.48 -0.42 1.24 16 28 H 0.38 5.94 5.89 -40.82 -0.24 5.70 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.58 7.78 -51.93 -0.40 0.18 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.03 0.29 7.08 -51.93 -0.37 -0.07 16 36 H 0.08 1.12 7.47 -51.93 -0.39 0.74 16 37 H 0.34 2.86 8.20 -39.29 -0.32 2.53 16 38 H 0.34 2.86 9.08 -39.29 -0.36 2.50 16 39 H 0.09 1.90 6.19 -52.49 -0.32 1.58 16 40 H 0.12 3.22 6.16 -52.48 -0.32 2.89 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -28.13 314.91 -10.02 -38.15 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.99 Total: 14.23 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -4.03 Total: -28.73 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.28 Total: -42.78 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.13 -10.02 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089149085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.925 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds