Wall clock time and date at job start Mon Mar 30 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48501 * 109.47167 * 239.99914 * 3 2 1 5 5 H 1.48506 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47323 * 119.99542 * 3 2 1 7 7 C 1.39865 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00139 * 197.96935 * 7 2 1 9 9 C 1.41135 * 119.99771 * 17.97879 * 7 2 1 10 10 C 1.40892 * 120.15332 * 204.60829 * 9 7 2 11 11 C 1.36335 * 119.83523 * 179.97438 * 10 9 7 12 12 C 1.39565 * 120.16373 * 359.97438 * 11 10 9 13 13 N 1.38861 * 119.84187 * 180.02562 * 12 11 10 14 14 C 1.46494 * 119.99885 * 180.02562 * 13 12 11 15 15 H 1.08995 * 110.02143 * 326.38858 * 14 13 12 16 16 C 1.54269 * 110.07485 * 87.80968 * 14 13 12 17 17 C 1.54884 * 104.19975 * 142.91708 * 16 14 13 18 18 C 1.54898 * 102.74703 * 322.05737 * 17 16 14 19 19 C 1.53881 * 110.03223 * 204.99477 * 14 13 12 20 20 H 1.09002 * 110.02656 * 121.38258 * 19 14 13 21 21 C 1.52997 * 110.03278 * 0.02562 * 19 14 13 22 22 N 1.46893 * 109.47200 * 175.68616 * 21 19 14 23 23 C 1.39563 * 120.31418 * 0.27570 * 12 11 10 24 24 C 1.36340 * 120.15970 * 359.48370 * 23 12 11 25 25 H 0.97005 * 120.00355 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.08018 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.91659 * 180.02562 * 11 10 9 28 28 H 0.97008 * 119.99918 * 359.97438 * 13 12 11 29 29 H 1.09007 * 110.48142 * 261.59568 * 16 14 13 30 30 H 1.08997 * 110.48823 * 24.23097 * 16 14 13 31 31 H 1.08997 * 110.75943 * 80.36854 * 17 16 14 32 32 H 1.08996 * 110.76107 * 203.74210 * 17 16 14 33 33 H 1.08996 * 110.48025 * 279.26133 * 18 17 16 34 34 H 1.09000 * 110.48536 * 156.62401 * 18 17 16 35 35 H 1.09002 * 109.47150 * 295.69206 * 21 19 14 36 36 H 1.09001 * 109.46960 * 55.68567 * 21 19 14 37 37 H 1.00897 * 110.99862 * 56.04967 * 22 21 19 38 38 H 1.00903 * 110.99746 * 179.97438 * 22 21 19 39 39 H 1.07998 * 119.91774 * 179.72345 * 23 12 11 40 40 H 1.08004 * 120.07747 * 180.23355 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0488 -1.2340 0.2891 9 6 1.3543 -2.4038 -0.3762 10 6 1.8265 -3.6472 0.0886 11 6 1.1894 -4.7951 -0.2789 12 6 0.0718 -4.7407 -1.1131 13 7 -0.5723 -5.9140 -1.4829 14 6 -1.7453 -5.8609 -2.3587 15 1 -2.3186 -4.9554 -2.1601 16 6 -1.3045 -5.8936 -3.8367 17 6 -2.3880 -6.7503 -4.5374 18 6 -2.6906 -7.8461 -3.4853 19 6 -2.6266 -7.1024 -2.1354 20 1 -3.6276 -6.7993 -1.8282 21 6 -2.0021 -8.0033 -1.0680 22 7 -2.9025 -9.1302 -0.7904 23 6 -0.3984 -3.5130 -1.5815 24 6 0.2258 -2.3566 -1.2182 25 1 -0.4851 0.8401 -0.0004 26 1 2.6910 -3.6908 0.7345 27 1 1.5501 -5.7490 0.0770 28 1 -0.2450 -6.7689 -1.1618 29 1 -1.2874 -4.8859 -4.2520 30 1 -0.3257 -6.3634 -3.9326 31 1 -3.2781 -6.1555 -4.7424 32 1 -1.9979 -7.1923 -5.4542 33 1 -1.9356 -8.6313 -3.5245 34 1 -3.6849 -8.2635 -3.6443 35 1 -1.0453 -8.3825 -1.4271 36 1 -1.8457 -7.4296 -0.1545 37 1 -3.1145 -9.6401 -1.6349 38 1 -2.5119 -9.7406 -0.0883 39 1 -1.2611 -3.4786 -2.2303 40 1 -0.1415 -1.4070 -1.5785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089149085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:35 Heat of formation + Delta-G solvation = -2.131641 kcal Electronic energy + Delta-G solvation = -19289.836090 eV Core-core repulsion = 16488.526167 eV Total energy + Delta-G solvation = -2801.309922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60461 -39.08061 -36.04210 -35.00176 -34.22160 -31.36497 -30.76390 -29.58005 -28.23045 -25.89158 -24.81606 -22.90634 -22.26050 -21.53312 -19.82010 -19.15367 -18.26482 -17.16426 -16.86635 -16.32488 -16.23526 -15.70625 -15.26956 -15.14766 -14.54746 -14.42004 -14.04653 -13.86840 -13.63654 -13.57860 -13.31426 -13.05539 -12.73192 -12.42050 -12.23760 -12.04529 -11.89547 -11.64948 -11.58416 -11.55739 -11.48448 -11.12742 -10.99934 -10.26553 -9.59986 -9.39738 -8.54376 -8.13862 -5.99993 1.12070 1.19454 1.39697 1.50731 1.60347 2.27428 2.84675 2.89292 3.49580 3.68939 3.78400 3.87203 4.07386 4.35603 4.38839 4.41492 4.49489 4.56883 4.60815 4.66991 4.78577 4.85118 5.00398 5.02998 5.07662 5.15616 5.20980 5.24223 5.31674 5.40346 5.46165 5.47994 5.71516 5.82287 5.97308 6.19319 6.22992 6.40354 6.62501 6.69065 6.89525 7.08913 7.15968 7.32665 8.48701 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035522 B = 0.004302 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.063941 B = 6507.445291 C = 6863.809075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.033 3.967 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.035 3.965 10 C -0.196 4.196 11 C -0.168 4.168 12 C 0.115 3.885 13 N -0.743 5.743 14 C 0.156 3.844 15 H 0.055 0.945 16 C -0.138 4.138 17 C -0.117 4.117 18 C -0.109 4.109 19 C -0.091 4.091 20 H 0.077 0.923 21 C 0.072 3.928 22 N -0.853 5.853 23 C -0.173 4.173 24 C -0.143 4.143 25 H 0.282 0.718 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.396 0.604 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.059 0.941 37 H 0.347 0.653 38 H 0.349 0.651 39 H 0.102 0.898 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.506 -14.503 -6.705 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.032 3.968 10 C -0.216 4.216 11 C -0.190 4.190 12 C 0.015 3.985 13 N -0.379 5.379 14 C 0.050 3.950 15 H 0.073 0.927 16 C -0.177 4.177 17 C -0.155 4.155 18 C -0.147 4.147 19 C -0.110 4.110 20 H 0.095 0.905 21 C -0.059 4.059 22 N -0.385 5.385 23 C -0.195 4.195 24 C -0.163 4.163 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.134 0.866 28 H 0.233 0.767 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.120 0.880 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.361 -13.729 -6.534 16.482 hybrid contribution 1.351 0.329 0.058 1.392 sum -5.010 -13.400 -6.476 15.704 Atomic orbital electron populations 1.69919 1.08782 1.29820 1.38534 1.26603 0.95427 1.04072 0.91817 0.85355 0.78776 0.76316 0.79797 1.18777 1.19441 1.18611 1.19574 0.98042 0.92844 1.43511 0.91438 1.17801 0.93633 0.93031 0.92351 1.20744 1.03061 0.92898 1.04901 1.20079 0.97967 0.97542 1.03414 1.17466 0.94727 0.86809 0.99472 1.44254 1.32424 1.04770 1.56468 1.21423 0.86370 0.97833 0.89422 0.92657 1.22867 0.99431 0.99931 0.95483 1.22436 0.98130 0.96818 0.98133 1.22376 1.02431 0.97349 0.92503 1.21959 0.98861 0.94098 0.96131 0.90464 1.21664 0.93429 0.92611 0.98156 1.58683 1.49377 1.14536 1.15873 1.20246 1.01873 0.91913 1.05474 1.20862 0.98933 0.96679 0.99873 0.90785 0.88607 0.86648 0.76708 0.93091 0.91988 0.91017 0.90314 0.91153 0.89861 0.94856 0.92267 0.83910 0.83804 0.87959 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.88 10.96 21.82 0.24 -46.64 16 2 C 0.03 1.75 5.13 85.23 0.44 2.19 16 3 Si 0.98 40.73 29.60 68.60 2.03 42.76 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.51 -29.11 9.03 23.38 0.21 -28.90 16 8 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 9 C 0.03 1.97 5.57 -21.27 -0.12 1.85 16 10 C -0.20 -9.98 9.74 22.48 0.22 -9.76 16 11 C -0.17 -7.46 9.82 22.15 0.22 -7.24 16 12 C 0.11 4.92 6.67 38.67 0.26 5.18 16 13 N -0.74 -24.31 4.54 -315.12 -1.43 -25.74 16 14 C 0.16 4.45 2.89 45.72 0.13 4.58 16 15 H 0.06 1.83 6.41 -2.39 -0.02 1.82 16 16 C -0.14 -3.56 6.53 31.67 0.21 -3.35 16 17 C -0.12 -2.18 6.91 31.89 0.22 -1.96 16 18 C -0.11 -1.81 5.53 31.67 0.18 -1.64 16 19 C -0.09 -1.99 3.15 -10.07 -0.03 -2.03 16 20 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 21 C 0.07 1.51 4.77 86.30 0.41 1.92 16 22 N -0.85 -14.46 9.62 -186.73 -1.80 -16.25 16 23 C -0.17 -8.27 9.13 22.15 0.20 -8.07 16 24 C -0.14 -7.90 8.64 22.47 0.19 -7.71 16 25 H 0.28 14.31 8.30 -92.70 -0.77 13.55 16 26 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 27 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 28 H 0.40 11.32 5.89 -92.70 -0.55 10.77 16 29 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.06 1.68 8.05 -2.39 -0.02 1.67 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.07 7.78 -2.39 -0.02 1.05 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.03 0.65 7.08 -2.39 -0.02 0.63 16 36 H 0.06 1.51 7.47 -2.39 -0.02 1.50 16 37 H 0.35 4.65 8.20 -89.70 -0.74 3.91 16 38 H 0.35 4.91 9.08 -89.69 -0.81 4.09 16 39 H 0.10 4.50 6.19 -2.91 -0.02 4.48 16 40 H 0.10 5.65 6.16 -2.91 -0.02 5.63 16 Total: -1.00 -62.79 314.91 0.74 -62.04 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -1.03 Total: 38.77 kcal Atomic # 6 Polarization: -57.68 SS G_CDS: 2.74 Total: -54.95 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -2.99 Total: -88.63 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -62.79 0.74 -62.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089149085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.913 kcal (2) G-P(sol) polarization free energy of solvation -62.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds