Wall clock time and date at job start Mon Mar 30 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 119.99966 * 2 1 4 4 H 1.48504 * 109.46859 * 239.99942 * 3 2 1 5 5 H 1.48499 * 109.46915 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47060 * 120.00100 * 3 2 1 7 7 C 1.37878 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00129 * 179.84030 * 7 2 1 9 9 C 1.50697 * 119.99840 * 359.83632 * 7 2 1 10 10 C 1.53005 * 115.55036 * 85.55143 * 9 7 2 11 11 N 1.46497 * 109.47193 * 51.58382 * 10 9 7 12 12 C 1.36338 * 125.63851 * 273.55207 * 11 10 9 13 13 C 1.34850 * 108.21772 * 180.26265 * 12 11 10 14 14 C 1.40889 * 107.41734 * 359.62132 * 13 12 11 15 15 C 1.34844 * 107.41770 * 0.37842 * 14 13 12 16 16 C 1.50698 * 125.89404 * 179.73452 * 15 14 13 17 17 N 1.46896 * 109.47450 * 95.04126 * 16 15 14 18 18 C 1.46901 * 111.00101 * 180.02562 * 17 16 15 19 19 C 1.53004 * 117.49357 * 223.62201 * 18 17 16 20 20 C 1.53001 * 59.99972 * 252.50715 * 19 18 17 21 21 C 1.53006 * 117.49930 * 231.21639 * 9 7 2 22 22 C 1.52998 * 117.50184 * 299.87800 * 9 7 2 23 23 H 0.97001 * 120.00459 * 5.06584 * 1 2 3 24 24 H 1.08999 * 109.46711 * 291.58735 * 10 9 7 25 25 H 1.08997 * 109.47139 * 171.58930 * 10 9 7 26 26 H 1.08000 * 125.89073 * 359.97438 * 12 11 10 27 27 H 1.08003 * 126.29088 * 179.76581 * 13 12 11 28 28 H 1.07996 * 126.29088 * 180.17419 * 14 13 12 29 29 H 1.08998 * 109.47457 * 215.04813 * 16 15 14 30 30 H 1.09001 * 109.46921 * 335.03889 * 16 15 14 31 31 H 1.00904 * 111.00086 * 56.04689 * 17 16 15 32 32 H 1.08998 * 115.55024 * 9.32558 * 18 17 16 33 33 H 1.08992 * 117.50430 * 359.97438 * 19 18 17 34 34 H 1.08999 * 117.49856 * 145.02106 * 19 18 17 35 35 H 1.08999 * 117.50296 * 252.51534 * 20 19 18 36 36 H 1.09002 * 117.50027 * 107.49068 * 20 19 18 37 37 H 1.08999 * 117.50117 * 215.00198 * 21 9 7 38 38 H 1.08993 * 117.49905 * 0.03222 * 21 9 7 39 39 H 1.09003 * 117.49720 * 359.97438 * 22 9 7 40 40 H 1.08998 * 117.50430 * 144.97012 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 -0.0021 9 6 1.2510 -2.4991 0.0048 10 6 0.8250 -3.0197 -1.3694 11 7 1.9845 -3.0412 -2.2645 12 6 2.4244 -1.9950 -3.0199 13 6 3.5082 -2.4010 -3.7120 14 6 3.7513 -3.7446 -3.3647 15 6 2.8019 -4.1110 -2.4800 16 6 2.6669 -5.4688 -1.8404 17 7 3.3356 -5.4627 -0.5325 18 6 3.2248 -6.7734 0.1216 19 6 2.8803 -6.7921 1.6122 20 6 4.2960 -7.1428 1.1497 21 6 1.6367 -3.5340 1.0638 22 6 0.3152 -2.7708 1.1844 23 1 -0.4851 0.8367 -0.0742 24 1 0.0581 -2.3653 -1.7839 25 1 0.4255 -4.0287 -1.2678 26 1 1.9787 -1.0121 -3.0609 27 1 4.0853 -1.8051 -4.4036 28 1 4.5492 -4.3677 -3.7407 29 1 1.6111 -5.7046 -1.7077 30 1 3.1290 -6.2198 -2.4813 31 1 2.9685 -4.7314 0.0579 32 1 2.8239 -7.5756 -0.4981 33 1 2.7364 -5.8320 2.1076 34 1 2.2527 -7.6067 1.9736 35 1 4.5997 -8.1880 1.2066 36 1 5.0830 -6.4133 1.3407 37 1 1.5867 -4.5856 0.7815 38 1 2.4349 -3.2707 1.7576 39 1 0.2449 -2.0056 1.9576 40 1 -0.6042 -3.3198 0.9814 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091001420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:33 Heat of formation + Delta-G solvation = 106.838311 kcal Electronic energy + Delta-G solvation = -20211.716291 eV Core-core repulsion = 17415.131660 eV Total energy + Delta-G solvation = -2796.584631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.47427 -37.69709 -36.64170 -33.37339 -32.08037 -31.37790 -28.39288 -26.05311 -25.13337 -23.99099 -22.44355 -21.64053 -20.63797 -19.83652 -19.46203 -18.36007 -16.61332 -15.85729 -15.61056 -15.04788 -14.75872 -14.23829 -14.18977 -13.54754 -13.36117 -12.76793 -12.44824 -12.26949 -11.95776 -11.65118 -11.49432 -11.34974 -11.34774 -11.23181 -10.96331 -10.92883 -10.58507 -10.55260 -10.33556 -10.20201 -9.77044 -9.10869 -8.60065 -8.32051 -7.92568 -7.65731 -7.18348 -6.16051 -4.22061 3.04551 3.25937 3.30408 3.35290 3.79664 3.91564 3.99782 4.32504 4.51065 5.01057 5.05285 5.12426 5.16163 5.28094 5.44802 5.58129 5.67775 5.75497 5.76893 5.91766 5.92053 6.05675 6.17160 6.18218 6.26270 6.29720 6.35563 6.38640 6.47966 6.62563 6.89080 7.06749 7.09579 7.17203 7.32124 7.34373 7.73754 7.77904 7.87288 8.16252 8.24153 8.37175 8.80934 9.44452 10.92090 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.007821 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.745406 B = 3579.374356 C = 4412.144663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.073 3.927 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.483 4.483 8 H 0.061 0.939 9 C 0.032 3.968 10 C 0.138 3.862 11 N -0.407 5.407 12 C 0.037 3.963 13 C -0.235 4.235 14 C -0.186 4.186 15 C -0.004 4.004 16 C 0.140 3.860 17 N -0.667 5.667 18 C 0.023 3.977 19 C -0.213 4.213 20 C -0.174 4.174 21 C -0.225 4.225 22 C -0.142 4.142 23 H 0.262 0.738 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.153 0.847 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.028 0.972 30 H 0.084 0.916 31 H 0.365 0.635 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 -10.065 -1.601 10.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.521 4.521 8 H 0.079 0.921 9 C 0.031 3.969 10 C 0.016 3.984 11 N -0.078 5.078 12 C -0.096 4.096 13 C -0.259 4.259 14 C -0.212 4.212 15 C -0.116 4.116 16 C 0.011 3.989 17 N -0.305 5.305 18 C -0.088 4.088 19 C -0.252 4.252 20 C -0.212 4.212 21 C -0.262 4.262 22 C -0.180 4.180 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.171 0.829 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.046 0.954 30 H 0.102 0.898 31 H 0.194 0.806 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.293 -10.026 -1.559 10.402 hybrid contribution -0.466 1.041 0.422 1.216 sum 1.827 -8.985 -1.137 9.239 Atomic orbital electron populations 1.69958 1.05808 1.27124 1.49039 1.24941 0.94799 0.98896 0.94400 0.86701 0.79709 0.82941 0.79087 1.19822 1.21315 1.20187 1.20288 0.92474 0.88032 1.51310 0.92121 1.19130 0.98607 0.93883 0.85277 1.21543 0.85872 0.99312 0.91690 1.43935 1.22708 1.09139 1.32059 1.21651 0.98746 0.92880 0.96364 1.20646 1.01365 0.96417 1.07452 1.20382 1.00655 0.96470 1.03701 1.19867 0.96832 0.90393 1.04557 1.20204 0.95896 0.92680 0.90149 1.60489 1.60837 1.04068 1.05149 1.22382 1.02835 0.93734 0.89815 1.23479 0.99338 1.03613 0.98757 1.23076 0.92676 1.01581 1.03871 1.23258 1.00476 0.95329 1.07147 1.22505 0.90874 1.01102 1.03535 0.92823 0.89307 0.92810 0.82906 0.85919 0.86026 0.95405 0.89798 0.80587 0.87739 0.88232 0.89073 0.89106 0.88519 0.91302 0.89977 0.89328 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.36 12.73 55.43 0.71 -22.66 16 2 C 0.07 1.88 5.42 -17.82 -0.10 1.79 16 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.48 -12.42 7.66 -34.44 -0.26 -12.68 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.03 0.72 1.72 -155.66 -0.27 0.46 16 10 C 0.14 2.88 5.89 -4.04 -0.02 2.86 16 11 N -0.41 -8.39 2.58 -112.54 -0.29 -8.68 16 12 C 0.04 0.78 10.50 -16.75 -0.18 0.60 16 13 C -0.23 -4.56 10.86 -39.78 -0.43 -4.99 16 14 C -0.19 -3.53 10.76 -39.78 -0.43 -3.95 16 15 C 0.00 -0.08 6.40 -81.79 -0.52 -0.60 16 16 C 0.14 2.29 5.68 -4.98 -0.03 2.26 16 17 N -0.67 -11.17 6.66 -107.99 -0.72 -11.89 16 18 C 0.02 0.32 6.23 -67.71 -0.42 -0.10 16 19 C -0.21 -2.74 9.69 -26.73 -0.26 -3.00 16 20 C -0.17 -2.17 10.46 -26.73 -0.28 -2.45 16 21 C -0.22 -4.54 7.36 -26.69 -0.20 -4.73 16 22 C -0.14 -3.08 9.26 -26.69 -0.25 -3.32 16 23 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 24 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 25 H 0.05 1.02 6.94 -51.93 -0.36 0.66 16 26 H 0.15 3.21 8.06 -52.49 -0.42 2.79 16 27 H 0.12 2.11 8.06 -52.48 -0.42 1.69 16 28 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 29 H 0.03 0.44 7.17 -51.93 -0.37 0.07 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.36 6.65 3.85 -39.29 -0.15 6.50 16 32 H 0.10 1.27 7.90 -51.93 -0.41 0.86 16 33 H 0.10 1.42 7.07 -51.93 -0.37 1.05 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.26 5.06 -51.93 -0.26 1.00 16 38 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 39 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -26.60 324.13 -10.20 -36.81 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -6.12 Total: 13.83 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -3.64 Total: -27.87 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.30 Total: -43.22 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.60 -10.20 -36.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091001420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.646 kcal (2) G-P(sol) polarization free energy of solvation -26.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds