Wall clock time and date at job start Mon Mar 30 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 119.99966 * 2 1 4 4 H 1.48504 * 109.46859 * 239.99942 * 3 2 1 5 5 H 1.48499 * 109.46915 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47060 * 120.00100 * 3 2 1 7 7 C 1.37878 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00129 * 179.84030 * 7 2 1 9 9 C 1.50697 * 119.99840 * 359.83632 * 7 2 1 10 10 C 1.53005 * 115.55036 * 85.55143 * 9 7 2 11 11 N 1.46497 * 109.47193 * 51.58382 * 10 9 7 12 12 C 1.36338 * 125.63851 * 273.55207 * 11 10 9 13 13 C 1.34850 * 108.21772 * 180.26265 * 12 11 10 14 14 C 1.40889 * 107.41734 * 359.62132 * 13 12 11 15 15 C 1.34844 * 107.41770 * 0.37842 * 14 13 12 16 16 C 1.50698 * 125.89404 * 179.73452 * 15 14 13 17 17 N 1.46896 * 109.47450 * 95.04126 * 16 15 14 18 18 C 1.46901 * 111.00101 * 180.02562 * 17 16 15 19 19 C 1.53004 * 117.49357 * 223.62201 * 18 17 16 20 20 C 1.53001 * 59.99972 * 252.50715 * 19 18 17 21 21 C 1.53006 * 117.49930 * 231.21639 * 9 7 2 22 22 C 1.52998 * 117.50184 * 299.87800 * 9 7 2 23 23 H 0.97001 * 120.00459 * 5.06584 * 1 2 3 24 24 H 1.08999 * 109.46711 * 291.58735 * 10 9 7 25 25 H 1.08997 * 109.47139 * 171.58930 * 10 9 7 26 26 H 1.08000 * 125.89073 * 359.97438 * 12 11 10 27 27 H 1.08003 * 126.29088 * 179.76581 * 13 12 11 28 28 H 1.07996 * 126.29088 * 180.17419 * 14 13 12 29 29 H 1.08998 * 109.47457 * 215.04813 * 16 15 14 30 30 H 1.09001 * 109.46921 * 335.03889 * 16 15 14 31 31 H 1.00904 * 111.00086 * 56.04689 * 17 16 15 32 32 H 1.08998 * 115.55024 * 9.32558 * 18 17 16 33 33 H 1.08992 * 117.50430 * 359.97438 * 19 18 17 34 34 H 1.08999 * 117.49856 * 145.02106 * 19 18 17 35 35 H 1.08999 * 117.50296 * 252.51534 * 20 19 18 36 36 H 1.09002 * 117.50027 * 107.49068 * 20 19 18 37 37 H 1.08999 * 117.50117 * 215.00198 * 21 9 7 38 38 H 1.08993 * 117.49905 * 0.03222 * 21 9 7 39 39 H 1.09003 * 117.49720 * 359.97438 * 22 9 7 40 40 H 1.08998 * 117.50430 * 144.97012 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 -0.0021 9 6 1.2510 -2.4991 0.0048 10 6 0.8250 -3.0197 -1.3694 11 7 1.9845 -3.0412 -2.2645 12 6 2.4244 -1.9950 -3.0199 13 6 3.5082 -2.4010 -3.7120 14 6 3.7513 -3.7446 -3.3647 15 6 2.8019 -4.1110 -2.4800 16 6 2.6669 -5.4688 -1.8404 17 7 3.3356 -5.4627 -0.5325 18 6 3.2248 -6.7734 0.1216 19 6 2.8803 -6.7921 1.6122 20 6 4.2960 -7.1428 1.1497 21 6 1.6367 -3.5340 1.0638 22 6 0.3152 -2.7708 1.1844 23 1 -0.4851 0.8367 -0.0742 24 1 0.0581 -2.3653 -1.7839 25 1 0.4255 -4.0287 -1.2678 26 1 1.9787 -1.0121 -3.0609 27 1 4.0853 -1.8051 -4.4036 28 1 4.5492 -4.3677 -3.7407 29 1 1.6111 -5.7046 -1.7077 30 1 3.1290 -6.2198 -2.4813 31 1 2.9685 -4.7314 0.0579 32 1 2.8239 -7.5756 -0.4981 33 1 2.7364 -5.8320 2.1076 34 1 2.2527 -7.6067 1.9736 35 1 4.5997 -8.1880 1.2066 36 1 5.0830 -6.4133 1.3407 37 1 1.5867 -4.5856 0.7815 38 1 2.4349 -3.2707 1.7576 39 1 0.2449 -2.0056 1.9576 40 1 -0.6042 -3.3198 0.9814 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091001420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:32 Heat of formation + Delta-G solvation = 94.373515 kcal Electronic energy + Delta-G solvation = -20212.256805 eV Core-core repulsion = 17415.131660 eV Total energy + Delta-G solvation = -2797.125145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.99825 -38.88039 -38.27721 -34.60231 -34.03583 -32.96782 -29.79540 -27.88307 -26.91015 -25.33920 -23.67455 -22.91455 -21.88738 -21.50253 -21.07148 -19.92069 -18.29399 -17.33477 -16.94638 -16.66853 -16.35863 -15.83806 -15.58706 -15.11737 -14.77769 -14.17598 -14.00576 -13.69164 -13.46122 -13.33052 -13.06837 -12.88556 -12.79650 -12.69544 -12.65357 -12.40618 -12.31708 -12.07054 -11.66802 -11.52731 -11.20790 -10.98434 -10.51866 -10.10054 -9.23833 -9.10951 -8.69824 -8.15841 -6.25050 1.37179 1.39669 1.46192 1.53635 2.28598 2.34973 2.40810 2.95842 3.13626 3.30914 3.41287 3.99937 4.04601 4.08750 4.09179 4.17063 4.24651 4.40357 4.44762 4.54011 4.58037 4.68764 4.75996 4.79888 4.83537 4.85493 4.92760 5.01647 5.10135 5.15910 5.32574 5.41901 5.56350 5.57622 5.62454 5.72142 6.16620 6.32064 6.35533 6.43788 6.63458 6.77295 6.80158 7.42739 8.91267 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.007821 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.745406 B = 3579.374356 C = 4412.144663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.039 3.961 3 Si 0.934 3.066 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.489 4.489 8 H 0.036 0.964 9 C 0.011 3.989 10 C 0.148 3.852 11 N -0.414 5.414 12 C 0.004 3.996 13 C -0.232 4.232 14 C -0.197 4.197 15 C -0.006 4.006 16 C 0.141 3.859 17 N -0.683 5.683 18 C 0.011 3.989 19 C -0.212 4.212 20 C -0.167 4.167 21 C -0.196 4.196 22 C -0.144 4.144 23 H 0.261 0.739 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.035 0.965 30 H 0.107 0.893 31 H 0.352 0.648 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -12.143 -1.774 12.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.162 4.162 3 Si 0.760 3.240 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.010 3.990 10 C 0.026 3.974 11 N -0.087 5.087 12 C -0.129 4.129 13 C -0.256 4.256 14 C -0.222 4.222 15 C -0.119 4.119 16 C 0.013 3.987 17 N -0.320 5.320 18 C -0.099 4.099 19 C -0.251 4.251 20 C -0.205 4.205 21 C -0.233 4.233 22 C -0.182 4.182 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.157 0.843 27 H 0.159 0.841 28 H 0.162 0.838 29 H 0.053 0.947 30 H 0.125 0.875 31 H 0.179 0.821 32 H 0.144 0.856 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.841 -12.111 -1.738 12.561 hybrid contribution -0.568 1.653 0.485 1.814 sum 2.273 -10.458 -1.252 10.775 Atomic orbital electron populations 1.70018 1.06482 1.27458 1.49963 1.25406 0.95396 1.00985 0.94445 0.85987 0.78763 0.80543 0.78656 1.19885 1.20827 1.20495 1.20327 0.91476 0.89863 1.51019 0.94525 1.19149 0.99489 0.93771 0.86618 1.21320 0.85688 0.99852 0.90519 1.43968 1.22961 1.09598 1.32146 1.21692 1.00101 0.93019 0.98087 1.20953 1.00613 0.97059 1.06975 1.20719 1.01289 0.96449 1.03776 1.20450 0.96122 0.91076 1.04205 1.20315 0.96644 0.91432 0.90353 1.60481 1.61048 1.05225 1.05240 1.22574 1.04108 0.92870 0.90367 1.23497 1.00100 1.03534 0.97936 1.23130 0.92031 1.02640 1.02738 1.23156 0.98977 0.96037 1.05114 1.22432 0.92275 1.01108 1.02394 0.92946 0.91350 0.90605 0.84252 0.84119 0.83782 0.94721 0.87491 0.82057 0.85593 0.90017 0.86931 0.86561 0.90018 0.88839 0.90995 0.91789 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.46 12.73 21.45 0.27 -48.19 16 2 C 0.04 2.03 5.42 84.66 0.46 2.49 16 3 Si 0.93 42.90 29.54 68.60 2.03 44.92 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.49 -25.60 7.66 25.60 0.20 -25.40 16 8 H 0.04 2.05 7.81 -2.91 -0.02 2.03 16 9 C 0.01 0.48 1.72 -52.93 -0.09 0.39 16 10 C 0.15 6.16 5.89 86.38 0.51 6.67 16 11 N -0.41 -16.93 2.58 -509.98 -1.31 -18.24 16 12 C 0.00 0.16 10.50 83.21 0.87 1.04 16 13 C -0.23 -8.82 10.86 22.14 0.24 -8.58 16 14 C -0.20 -7.10 10.76 22.14 0.24 -6.86 16 15 C -0.01 -0.23 6.40 41.08 0.26 0.04 16 16 C 0.14 4.23 5.68 85.56 0.49 4.72 16 17 N -0.68 -21.25 6.66 -495.58 -3.30 -24.54 16 18 C 0.01 0.27 6.23 44.92 0.28 0.55 16 19 C -0.21 -4.86 9.69 30.60 0.30 -4.56 16 20 C -0.17 -3.70 10.46 30.60 0.32 -3.38 16 21 C -0.20 -7.74 7.36 30.62 0.23 -7.52 16 22 C -0.14 -6.19 9.26 30.62 0.28 -5.91 16 23 H 0.26 13.62 8.32 -92.71 -0.77 12.84 16 24 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 25 H 0.08 2.76 6.94 -2.39 -0.02 2.75 16 26 H 0.14 6.11 8.06 -2.91 -0.02 6.09 16 27 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 28 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 29 H 0.03 0.99 7.17 -2.39 -0.02 0.98 16 30 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.35 12.26 3.85 -89.69 -0.35 11.92 16 32 H 0.13 2.52 7.90 -2.39 -0.02 2.50 16 33 H 0.08 2.18 7.07 -2.39 -0.02 2.17 16 34 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.09 3.24 5.06 -2.39 -0.01 3.23 16 38 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.08 3.19 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -56.67 324.13 2.94 -53.73 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: 0.67 Total: 38.64 kcal Atomic # 6 Polarization: -50.90 SS G_CDS: 4.58 Total: -46.32 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -4.34 Total: -90.97 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -56.67 2.94 -53.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091001420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.099 kcal (2) G-P(sol) polarization free energy of solvation -56.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds