Wall clock time and date at job start Mon Mar 30 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00185 * 2 1 4 4 H 1.48503 * 109.46781 * 239.99593 * 3 2 1 5 5 H 1.48496 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46999 * 119.99658 * 3 2 1 7 7 C 1.37878 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99833 * 188.61201 * 7 2 1 9 9 C 1.50703 * 120.00158 * 8.60575 * 7 2 1 10 10 C 1.53002 * 115.56248 * 276.46278 * 9 7 2 11 11 N 1.46500 * 109.47186 * 320.16893 * 10 9 7 12 12 C 1.36344 * 125.63554 * 95.84581 * 11 10 9 13 13 C 1.34850 * 108.21998 * 180.02562 * 12 11 10 14 14 C 1.40898 * 107.41599 * 359.97438 * 13 12 11 15 15 C 1.50702 * 126.29099 * 179.97438 * 14 13 12 16 16 N 1.46898 * 109.46853 * 89.97554 * 15 14 13 17 17 C 1.46905 * 110.99864 * 179.97438 * 16 15 14 18 18 C 1.52994 * 117.50109 * 223.74856 * 17 16 15 19 19 C 1.52995 * 117.49620 * 155.08633 * 17 16 15 20 20 C 1.34853 * 107.41533 * 359.73970 * 14 13 12 21 21 C 1.52998 * 117.49653 * 62.15056 * 9 7 2 22 22 C 1.52998 * 60.03076 * 107.49942 * 21 9 7 23 23 H 0.97003 * 120.00030 * 354.97909 * 1 2 3 24 24 H 1.08994 * 109.46796 * 80.16686 * 10 9 7 25 25 H 1.09000 * 109.47052 * 200.17198 * 10 9 7 26 26 H 1.07996 * 125.88735 * 359.97438 * 12 11 10 27 27 H 1.07996 * 126.29338 * 180.02562 * 13 12 11 28 28 H 1.08993 * 109.46890 * 209.97549 * 15 14 13 29 29 H 1.08998 * 109.46780 * 329.97877 * 15 14 13 30 30 H 1.00907 * 110.99968 * 56.04860 * 16 15 14 31 31 H 1.09002 * 115.54929 * 9.42191 * 17 16 15 32 32 H 1.09002 * 117.49826 * 0.02562 * 18 17 16 33 33 H 1.09000 * 117.50111 * 145.02100 * 18 17 16 34 34 H 1.09006 * 117.49821 * 214.97837 * 19 17 16 35 35 H 1.09000 * 117.50525 * 359.97438 * 19 17 16 36 36 H 1.08002 * 125.88971 * 180.25252 * 20 14 13 37 37 H 1.09003 * 117.49930 * 359.97438 * 21 9 7 38 38 H 1.08997 * 117.49864 * 214.99824 * 21 9 7 39 39 H 1.09005 * 117.49925 * 107.47973 * 22 21 9 40 40 H 1.08998 * 117.50265 * 252.47207 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0754 -1.1993 0.1406 9 6 1.2636 -2.4919 -0.1942 10 6 0.6276 -3.0844 1.0650 11 7 1.5358 -2.9068 2.2007 12 6 1.4860 -1.8883 3.1059 13 6 2.4815 -2.0679 3.9977 14 6 3.1707 -3.2405 3.6300 15 6 4.3607 -3.8349 4.3382 16 7 3.8984 -4.7767 5.3664 17 6 5.0339 -5.3776 6.0787 18 6 4.9834 -6.8831 6.3462 19 6 4.7848 -5.8938 7.4973 20 6 2.5665 -3.7359 2.5308 21 6 0.5260 -2.6923 -1.5195 22 6 1.8126 -3.4700 -1.2358 23 1 -0.4850 0.8368 0.0735 24 1 -0.3143 -2.5757 1.2699 25 1 0.4408 -4.1473 0.9120 26 1 0.7730 -1.0773 3.1077 27 1 2.7082 -1.4305 4.8395 28 1 4.9863 -4.3618 3.6178 29 1 4.9387 -3.0391 4.8080 30 1 3.3063 -5.4884 4.9649 31 1 6.0080 -4.9364 5.8676 32 1 4.1077 -7.4279 5.9933 33 1 5.9243 -7.4324 6.3114 34 1 5.5951 -5.7926 8.2193 35 1 3.7784 -5.7872 7.9022 36 1 2.8520 -4.6329 2.0014 37 1 0.5761 -1.8852 -2.2504 38 1 -0.4126 -3.2459 -1.4944 39 1 1.7204 -4.5352 -1.0237 40 1 2.7095 -3.1751 -1.7805 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091003956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:42 Heat of formation + Delta-G solvation = 100.386788 kcal Electronic energy + Delta-G solvation = -19141.286712 eV Core-core repulsion = 16344.422322 eV Total energy + Delta-G solvation = -2796.864390 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.27565 -37.76648 -36.61925 -33.69160 -32.03253 -30.92154 -28.07803 -26.33113 -25.36100 -23.50754 -22.40445 -21.26300 -21.13971 -19.72155 -19.08260 -18.66965 -16.72145 -15.96006 -15.60425 -14.94683 -14.60965 -14.24283 -14.04098 -13.48516 -13.15451 -13.04835 -12.64001 -12.35215 -11.99227 -11.63120 -11.54628 -11.52798 -11.33665 -11.07505 -10.97224 -10.83508 -10.58240 -10.54770 -10.34047 -10.25011 -9.77155 -8.98630 -8.55722 -8.24328 -8.07136 -7.49936 -7.16399 -6.11662 -4.15464 3.21304 3.29328 3.33176 3.38081 3.68428 3.85394 4.06833 4.37320 4.46811 4.88669 4.95365 5.14683 5.17693 5.18658 5.57546 5.64827 5.65303 5.75209 5.84383 5.86521 5.94246 6.00761 6.10825 6.14057 6.23230 6.28915 6.41117 6.47318 6.59755 6.69994 6.91592 7.02785 7.19312 7.24237 7.32162 7.34984 7.56369 7.82794 7.90960 8.22857 8.29548 8.47032 8.84934 9.50400 10.96934 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025628 B = 0.004814 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.292604 B = 5814.500026 C = 6394.750729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.077 3.923 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.483 4.483 8 H 0.058 0.942 9 C 0.029 3.971 10 C 0.142 3.858 11 N -0.400 5.400 12 C 0.029 3.971 13 C -0.208 4.208 14 C -0.186 4.186 15 C 0.144 3.856 16 N -0.653 5.653 17 C 0.026 3.974 18 C -0.212 4.212 19 C -0.175 4.175 20 C -0.008 4.008 21 C -0.155 4.155 22 C -0.210 4.210 23 H 0.261 0.739 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.150 0.850 27 H 0.120 0.880 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.341 0.659 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.142 0.858 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -9.422 7.791 13.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.520 4.520 8 H 0.076 0.924 9 C 0.028 3.972 10 C 0.021 3.979 11 N -0.070 5.070 12 C -0.104 4.104 13 C -0.233 4.233 14 C -0.193 4.193 15 C 0.016 3.984 16 N -0.283 5.283 17 C -0.085 4.085 18 C -0.251 4.251 19 C -0.214 4.214 20 C -0.142 4.142 21 C -0.193 4.193 22 C -0.247 4.247 23 H 0.071 0.929 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.167 0.833 27 H 0.138 0.862 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.159 0.841 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.510 -8.819 7.865 12.648 hybrid contribution 0.730 0.375 -0.792 1.140 sum 5.239 -8.444 7.073 12.198 Atomic orbital electron populations 1.69942 1.05848 1.27003 1.49169 1.24889 0.94723 0.98754 0.94242 0.86729 0.79840 0.83116 0.78924 1.20314 1.21308 1.19878 1.20212 0.93340 0.88286 1.50196 0.92379 1.19185 0.97866 0.94437 0.85733 1.21513 0.92362 0.98137 0.85922 1.43821 1.23632 1.18963 1.20593 1.21603 1.02660 0.94325 0.91836 1.20440 0.99854 1.00356 1.02616 1.18920 1.01409 0.99664 0.99327 1.20114 0.93796 0.93921 0.90614 1.60341 1.17031 1.20036 1.30875 1.22456 0.95105 0.93161 0.97775 1.23416 1.02965 0.93426 1.05271 1.23100 1.03008 1.03429 0.91826 1.21280 0.94056 0.98878 0.99992 1.22540 0.92837 1.01260 1.02642 1.23073 0.98101 0.95407 1.08102 0.92884 0.89315 0.92772 0.83251 0.86171 0.95443 0.91055 0.83926 0.87631 0.88885 0.89153 0.89117 0.88537 0.84066 0.89881 0.91732 0.91733 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.56 13.06 55.43 0.72 -22.84 16 2 C 0.08 2.02 5.39 -17.82 -0.10 1.92 16 3 Si 0.89 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.48 -12.58 7.71 -34.44 -0.27 -12.84 16 8 H 0.06 1.60 7.83 -52.48 -0.41 1.19 16 9 C 0.03 0.66 1.72 -155.62 -0.27 0.39 16 10 C 0.14 2.98 6.18 -4.04 -0.02 2.96 16 11 N -0.40 -8.28 2.23 -117.13 -0.26 -8.54 16 12 C 0.03 0.60 10.89 -16.75 -0.18 0.42 16 13 C -0.21 -4.11 10.81 -39.78 -0.43 -4.54 16 14 C -0.19 -3.39 5.65 -104.82 -0.59 -3.98 16 15 C 0.14 2.17 6.04 -4.98 -0.03 2.14 16 16 N -0.65 -8.92 6.77 -108.00 -0.73 -9.66 16 17 C 0.03 0.30 6.31 -67.72 -0.43 -0.13 16 18 C -0.21 -2.06 10.23 -26.70 -0.27 -2.33 16 19 C -0.18 -1.80 10.46 -26.70 -0.28 -2.08 16 20 C -0.01 -0.16 11.35 -16.75 -0.19 -0.35 16 21 C -0.15 -3.39 9.61 -26.73 -0.26 -3.65 16 22 C -0.21 -4.32 9.88 -26.70 -0.26 -4.59 16 23 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 24 H 0.09 1.97 8.12 -51.93 -0.42 1.54 16 25 H 0.05 1.00 7.95 -51.93 -0.41 0.59 16 26 H 0.15 3.20 8.06 -52.49 -0.42 2.78 16 27 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.34 4.54 8.51 -39.29 -0.33 4.20 16 31 H 0.11 1.15 7.90 -51.93 -0.41 0.74 16 32 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.14 2.38 8.06 -52.49 -0.42 1.96 16 37 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 40 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -26.83 339.27 -10.37 -37.21 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.62 Total: 9.47 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -3.58 Total: -26.65 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.27 Total: -41.04 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.83 -10.37 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091003956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.593 kcal (2) G-P(sol) polarization free energy of solvation -26.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds