Wall clock time and date at job start Mon Mar 30 2020 06:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00185 * 2 1 4 4 H 1.48503 * 109.46781 * 239.99593 * 3 2 1 5 5 H 1.48496 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46999 * 119.99658 * 3 2 1 7 7 C 1.37878 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99833 * 188.61201 * 7 2 1 9 9 C 1.50703 * 120.00158 * 8.60575 * 7 2 1 10 10 C 1.53002 * 115.56248 * 276.46278 * 9 7 2 11 11 N 1.46500 * 109.47186 * 320.16893 * 10 9 7 12 12 C 1.36344 * 125.63554 * 95.84581 * 11 10 9 13 13 C 1.34850 * 108.21998 * 180.02562 * 12 11 10 14 14 C 1.40898 * 107.41599 * 359.97438 * 13 12 11 15 15 C 1.50702 * 126.29099 * 179.97438 * 14 13 12 16 16 N 1.46898 * 109.46853 * 89.97554 * 15 14 13 17 17 C 1.46905 * 110.99864 * 179.97438 * 16 15 14 18 18 C 1.52994 * 117.50109 * 223.74856 * 17 16 15 19 19 C 1.52995 * 117.49620 * 155.08633 * 17 16 15 20 20 C 1.34853 * 107.41533 * 359.73970 * 14 13 12 21 21 C 1.52998 * 117.49653 * 62.15056 * 9 7 2 22 22 C 1.52998 * 60.03076 * 107.49942 * 21 9 7 23 23 H 0.97003 * 120.00030 * 354.97909 * 1 2 3 24 24 H 1.08994 * 109.46796 * 80.16686 * 10 9 7 25 25 H 1.09000 * 109.47052 * 200.17198 * 10 9 7 26 26 H 1.07996 * 125.88735 * 359.97438 * 12 11 10 27 27 H 1.07996 * 126.29338 * 180.02562 * 13 12 11 28 28 H 1.08993 * 109.46890 * 209.97549 * 15 14 13 29 29 H 1.08998 * 109.46780 * 329.97877 * 15 14 13 30 30 H 1.00907 * 110.99968 * 56.04860 * 16 15 14 31 31 H 1.09002 * 115.54929 * 9.42191 * 17 16 15 32 32 H 1.09002 * 117.49826 * 0.02562 * 18 17 16 33 33 H 1.09000 * 117.50111 * 145.02100 * 18 17 16 34 34 H 1.09006 * 117.49821 * 214.97837 * 19 17 16 35 35 H 1.09000 * 117.50525 * 359.97438 * 19 17 16 36 36 H 1.08002 * 125.88971 * 180.25252 * 20 14 13 37 37 H 1.09003 * 117.49930 * 359.97438 * 21 9 7 38 38 H 1.08997 * 117.49864 * 214.99824 * 21 9 7 39 39 H 1.09005 * 117.49925 * 107.47973 * 22 21 9 40 40 H 1.08998 * 117.50265 * 252.47207 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0754 -1.1993 0.1406 9 6 1.2636 -2.4919 -0.1942 10 6 0.6276 -3.0844 1.0650 11 7 1.5358 -2.9068 2.2007 12 6 1.4860 -1.8883 3.1059 13 6 2.4815 -2.0679 3.9977 14 6 3.1707 -3.2405 3.6300 15 6 4.3607 -3.8349 4.3382 16 7 3.8984 -4.7767 5.3664 17 6 5.0339 -5.3776 6.0787 18 6 4.9834 -6.8831 6.3462 19 6 4.7848 -5.8938 7.4973 20 6 2.5665 -3.7359 2.5308 21 6 0.5260 -2.6923 -1.5195 22 6 1.8126 -3.4700 -1.2358 23 1 -0.4850 0.8368 0.0735 24 1 -0.3143 -2.5757 1.2699 25 1 0.4408 -4.1473 0.9120 26 1 0.7730 -1.0773 3.1077 27 1 2.7082 -1.4305 4.8395 28 1 4.9863 -4.3618 3.6178 29 1 4.9387 -3.0391 4.8080 30 1 3.3063 -5.4884 4.9649 31 1 6.0080 -4.9364 5.8676 32 1 4.1077 -7.4279 5.9933 33 1 5.9243 -7.4324 6.3114 34 1 5.5951 -5.7926 8.2193 35 1 3.7784 -5.7872 7.9022 36 1 2.8520 -4.6329 2.0014 37 1 0.5761 -1.8852 -2.2504 38 1 -0.4126 -3.2459 -1.4944 39 1 1.7204 -4.5352 -1.0237 40 1 2.7095 -3.1751 -1.7805 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091003956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:41 Heat of formation + Delta-G solvation = 88.130724 kcal Electronic energy + Delta-G solvation = -19141.818175 eV Core-core repulsion = 16344.422322 eV Total energy + Delta-G solvation = -2797.395853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.80331 -38.72594 -38.28182 -34.85583 -34.02437 -32.36487 -29.52648 -27.95810 -27.20845 -24.86027 -23.16359 -22.95776 -22.03390 -21.43059 -20.75883 -20.10767 -18.43055 -17.26471 -16.82696 -16.60949 -16.09057 -15.82104 -15.39226 -14.93124 -14.68430 -14.29367 -14.14623 -13.65611 -13.49637 -13.29034 -13.11014 -12.95351 -12.80187 -12.65312 -12.41796 -12.32026 -12.25059 -12.00004 -11.58973 -11.54520 -11.16676 -10.85615 -10.50586 -10.01168 -9.14000 -8.99344 -8.67092 -8.12907 -6.19560 1.37578 1.39763 1.45491 1.70714 2.22904 2.40254 2.52320 3.01980 3.17104 3.42329 3.46612 4.09435 4.15687 4.18942 4.26609 4.27813 4.40874 4.44496 4.54775 4.59491 4.66477 4.67373 4.81914 4.85000 4.89772 4.96445 5.00001 5.10060 5.12748 5.19961 5.34477 5.47881 5.54761 5.60169 5.75275 5.79302 6.23668 6.36214 6.42168 6.52736 6.69911 6.80774 6.90339 7.47413 8.94415 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025628 B = 0.004814 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.292604 B = 5814.500026 C = 6394.750729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.043 3.957 3 Si 0.929 3.071 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.488 4.488 8 H 0.036 0.964 9 C 0.002 3.998 10 C 0.151 3.849 11 N -0.408 5.408 12 C 0.000 4.000 13 C -0.214 4.214 14 C -0.185 4.185 15 C 0.152 3.848 16 N -0.662 5.662 17 C 0.009 3.991 18 C -0.198 4.198 19 C -0.175 4.175 20 C -0.013 4.013 21 C -0.157 4.157 22 C -0.186 4.186 23 H 0.260 0.740 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.134 0.866 27 H 0.128 0.872 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.342 0.658 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -11.258 8.214 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.158 4.158 3 Si 0.756 3.244 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.002 3.998 10 C 0.029 3.971 11 N -0.079 5.079 12 C -0.133 4.133 13 C -0.238 4.238 14 C -0.192 4.192 15 C 0.023 3.977 16 N -0.292 5.292 17 C -0.102 4.102 18 C -0.236 4.236 19 C -0.213 4.213 20 C -0.145 4.145 21 C -0.195 4.195 22 C -0.223 4.223 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.102 0.898 26 H 0.152 0.848 27 H 0.146 0.854 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.162 0.838 31 H 0.130 0.870 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.183 0.817 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.639 -10.661 8.293 14.636 hybrid contribution 0.426 0.921 -0.892 1.351 sum 6.064 -9.740 7.401 13.654 Atomic orbital electron populations 1.70002 1.06478 1.27212 1.50146 1.25338 0.95290 1.00754 0.94407 0.86059 0.78917 0.80952 0.78437 1.20294 1.20885 1.20387 1.20281 0.92421 0.90119 1.49756 0.94624 1.19255 0.99118 0.94416 0.87059 1.21356 0.91339 0.99386 0.85002 1.43848 1.24304 1.19221 1.20495 1.21577 1.03525 0.94935 0.93221 1.20679 0.99576 1.01080 1.02498 1.19267 1.01869 0.98911 0.99179 1.20011 0.92371 0.94283 0.90995 1.60268 1.18163 1.20367 1.30394 1.22533 0.94600 0.94611 0.98441 1.23458 1.03788 0.92399 1.03982 1.23153 1.03086 1.03358 0.91741 1.21741 0.93326 0.99277 1.00190 1.22470 0.94479 1.01228 1.01336 1.23080 0.96899 0.96653 1.05655 0.93101 0.91391 0.89778 0.84816 0.85420 0.94357 0.91234 0.83817 0.87046 0.88776 0.87561 0.87644 0.89458 0.81681 0.92374 0.89886 0.88443 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.75 13.06 21.45 0.28 -48.47 16 2 C 0.04 2.29 5.39 84.66 0.46 2.74 16 3 Si 0.93 43.42 29.55 68.60 2.03 45.45 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.49 -25.59 7.71 25.60 0.20 -25.40 16 8 H 0.04 1.99 7.83 -2.91 -0.02 1.97 16 9 C 0.00 0.11 1.72 -52.90 -0.09 0.02 16 10 C 0.15 6.19 6.18 86.38 0.53 6.72 16 11 N -0.41 -16.65 2.23 -524.48 -1.17 -17.82 16 12 C 0.00 0.00 10.89 83.21 0.91 0.90 16 13 C -0.21 -8.40 10.81 22.14 0.24 -8.16 16 14 C -0.19 -6.52 5.65 -19.99 -0.11 -6.63 16 15 C 0.15 4.31 6.04 85.56 0.52 4.82 16 16 N -0.66 -16.86 6.77 -495.59 -3.35 -20.21 16 17 C 0.01 0.18 6.31 44.91 0.28 0.46 16 18 C -0.20 -3.30 10.23 30.62 0.31 -2.98 16 19 C -0.18 -3.20 10.46 30.62 0.32 -2.88 16 20 C -0.01 -0.45 11.35 83.21 0.94 0.49 16 21 C -0.16 -6.73 9.61 30.59 0.29 -6.43 16 22 C -0.19 -7.24 9.88 30.62 0.30 -6.94 16 23 H 0.26 13.69 8.32 -92.71 -0.77 12.92 16 24 H 0.07 3.03 8.12 -2.39 -0.02 3.01 16 25 H 0.08 2.89 7.95 -2.39 -0.02 2.87 16 26 H 0.13 6.01 8.06 -2.91 -0.02 5.99 16 27 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.34 8.43 8.51 -89.69 -0.76 7.67 16 31 H 0.11 2.15 7.90 -2.39 -0.02 2.14 16 32 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.17 5.05 8.06 -2.91 -0.02 5.03 16 37 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.10 3.16 8.08 -2.38 -0.02 3.15 16 40 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -56.83 339.27 3.13 -53.70 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.24 Total: 30.63 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 5.10 Total: -43.27 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -4.24 Total: -86.51 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -56.83 3.13 -53.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091003956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.829 kcal (2) G-P(sol) polarization free energy of solvation -56.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds