Wall clock time and date at job start Mon Mar 30 2020 06:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99981 * 2 1 4 4 H 1.48497 * 109.47464 * 275.00458 * 3 2 1 5 5 H 1.48499 * 109.46778 * 35.00274 * 3 2 1 6 6 H 1.48491 * 109.47062 * 155.00141 * 3 2 1 7 7 C 1.37878 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99978 * 191.96398 * 7 2 1 9 9 C 1.50701 * 119.99858 * 11.95500 * 7 2 1 10 10 C 1.53004 * 115.56077 * 39.54848 * 9 7 2 11 11 N 1.46496 * 109.47157 * 90.45241 * 10 9 7 12 12 C 1.36343 * 125.63848 * 274.91318 * 11 10 9 13 13 C 1.34849 * 108.22399 * 179.83063 * 12 11 10 14 14 C 1.40892 * 107.41326 * 0.41975 * 13 12 11 15 15 C 1.50699 * 126.29361 * 179.73458 * 14 13 12 16 16 H 1.09002 * 109.47534 * 203.82709 * 15 14 13 17 17 N 1.46897 * 109.46980 * 323.82853 * 15 14 13 18 18 C 1.52996 * 109.46907 * 83.82411 * 15 14 13 19 19 C 1.53004 * 117.50359 * 249.85715 * 18 15 14 20 20 C 1.52997 * 60.00081 * 252.51174 * 19 18 15 21 21 C 1.34859 * 107.42015 * 359.73812 * 14 13 12 22 22 C 1.53000 * 117.49920 * 185.23250 * 9 7 2 23 23 C 1.53000 * 60.03089 * 107.50208 * 22 9 7 24 24 H 0.96994 * 120.00349 * 354.98526 * 1 2 3 25 25 H 1.09001 * 109.46921 * 210.45373 * 10 9 7 26 26 H 1.08999 * 109.46577 * 330.45310 * 10 9 7 27 27 H 1.08008 * 125.88535 * 359.97438 * 12 11 10 28 28 H 1.07995 * 126.29497 * 180.15900 * 13 12 11 29 29 H 1.00898 * 111.00400 * 59.99874 * 17 15 14 30 30 H 1.00900 * 111.00287 * 183.95103 * 17 15 14 31 31 H 1.09002 * 115.55093 * 35.57327 * 18 15 14 32 32 H 1.09006 * 117.49277 * 0.02562 * 19 18 15 33 33 H 1.08993 * 117.49855 * 145.02103 * 19 18 15 34 34 H 1.08999 * 117.50069 * 252.50392 * 20 19 18 35 35 H 1.09000 * 117.51710 * 107.47704 * 20 19 18 36 36 H 1.07992 * 125.89367 * 180.02562 * 21 14 13 37 37 H 1.09000 * 117.49797 * 0.02562 * 22 9 7 38 38 H 1.08997 * 117.50320 * 215.00543 * 22 9 7 39 39 H 1.09006 * 117.49662 * 107.47643 * 23 22 9 40 40 H 1.09000 * 117.50624 * 252.47775 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1076 -1.3947 5 1 1.5034 2.6198 0.8031 6 1 3.5955 1.4120 0.5916 7 6 2.0046 -1.1940 -0.0005 8 1 3.0670 -1.2042 0.1933 9 6 1.2756 -2.4849 -0.2715 10 6 0.2022 -2.4210 -1.3599 11 7 0.8018 -2.7449 -2.6567 12 6 1.4388 -1.8640 -3.4796 13 6 1.8551 -2.5340 -4.5733 14 6 1.4522 -3.8759 -4.4244 15 6 1.6942 -4.9940 -5.4054 16 1 0.9485 -5.7751 -5.2574 17 7 1.5932 -4.4737 -6.7755 18 6 3.0921 -5.5745 -5.1822 19 6 4.1464 -5.3123 -6.2596 20 6 3.5415 -6.7091 -6.1051 21 6 0.8101 -3.9759 -3.2428 22 6 2.0695 -3.7860 -0.1377 23 6 1.0233 -3.4172 0.9161 24 1 -0.4850 0.8368 0.0734 25 1 -0.5866 -3.1388 -1.1348 26 1 -0.2198 -1.4166 -1.3954 27 1 1.5866 -0.8115 -3.2875 28 1 2.3942 -2.1177 -5.4114 29 1 2.2748 -3.7477 -6.9378 30 1 1.6877 -5.2162 -7.4521 31 1 3.4282 -5.6059 -4.1458 32 1 3.8441 -4.7258 -7.1273 33 1 5.1762 -5.1709 -5.9321 34 1 4.1735 -7.4867 -5.6760 35 1 2.8411 -7.0422 -6.8710 36 1 0.3775 -4.8759 -2.8315 37 1 3.1188 -3.7083 0.1466 38 1 1.8273 -4.5963 -0.8253 39 1 0.0926 -3.9846 0.9214 40 1 1.3844 -3.0972 1.8935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091835315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:39 Heat of formation + Delta-G solvation = 100.403777 kcal Electronic energy + Delta-G solvation = -19587.826869 eV Core-core repulsion = 16790.963216 eV Total energy + Delta-G solvation = -2796.863653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.45453 -38.16847 -36.56572 -33.07555 -32.35284 -30.72297 -28.47845 -26.36341 -25.48090 -24.27557 -22.41402 -21.26861 -20.33045 -19.85055 -19.03488 -18.34366 -16.74483 -16.07498 -15.73473 -15.11273 -14.79936 -14.71807 -14.17515 -13.52383 -13.15550 -12.90650 -12.56247 -12.14533 -11.88384 -11.77595 -11.60494 -11.50994 -11.26838 -11.10676 -11.03793 -10.72966 -10.50087 -10.37297 -10.28716 -9.80695 -9.67095 -9.14381 -8.90268 -8.56085 -8.27792 -7.55346 -7.23100 -6.23654 -4.25294 3.18066 3.19426 3.27368 3.30467 3.70401 3.82985 4.01784 4.24867 4.82477 4.84902 4.86852 4.97416 5.07509 5.41829 5.53131 5.55105 5.68598 5.84497 5.90438 5.92536 5.96655 6.03824 6.08334 6.23087 6.28750 6.30156 6.41717 6.58345 6.61898 6.83282 6.97801 6.98578 7.10408 7.23751 7.31736 7.43730 7.63649 7.77991 7.83780 8.14969 8.31946 8.38768 8.71319 9.34063 10.79776 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.005415 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.591554 B = 5169.232726 C = 5512.891134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.480 4.480 8 H 0.062 0.938 9 C 0.037 3.963 10 C 0.123 3.877 11 N -0.412 5.412 12 C 0.015 3.985 13 C -0.208 4.208 14 C -0.169 4.169 15 C 0.202 3.798 16 H 0.078 0.922 17 N -0.836 5.836 18 C -0.168 4.168 19 C -0.185 4.185 20 C -0.189 4.189 21 C -0.019 4.019 22 C -0.199 4.199 23 C -0.195 4.195 24 H 0.266 0.734 25 H 0.054 0.946 26 H 0.139 0.861 27 H 0.151 0.849 28 H 0.118 0.882 29 H 0.341 0.659 30 H 0.331 0.669 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.144 0.856 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.065 -8.284 -9.324 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.036 3.964 10 C 0.002 3.998 11 N -0.082 5.082 12 C -0.118 4.118 13 C -0.233 4.233 14 C -0.177 4.177 15 C 0.089 3.911 16 H 0.096 0.904 17 N -0.365 5.365 18 C -0.188 4.188 19 C -0.223 4.223 20 C -0.226 4.226 21 C -0.152 4.152 22 C -0.236 4.236 23 C -0.234 4.234 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.156 0.844 27 H 0.169 0.831 28 H 0.136 0.864 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.981 -7.803 -8.820 11.942 hybrid contribution 1.575 0.383 0.179 1.631 sum 3.556 -7.420 -8.641 11.932 Atomic orbital electron populations 1.69679 1.06013 1.27345 1.49285 1.24977 0.94872 0.99277 0.94351 0.86518 0.80031 0.82851 0.78378 1.20240 1.21067 1.19756 1.20586 0.94539 0.89097 1.47460 0.91972 1.19249 0.95111 0.89521 0.92552 1.22020 0.93925 1.05063 0.78755 1.44346 1.41180 1.06853 1.15825 1.21697 1.02149 0.96180 0.91806 1.20325 1.09663 0.93684 0.99597 1.18810 1.08003 0.94577 0.96274 1.19052 0.91782 0.93376 0.86844 0.90357 1.58890 1.58866 1.15492 1.03280 1.23391 0.97346 1.01231 0.96840 1.22980 0.98720 0.99013 1.01561 1.22961 1.04102 0.91965 1.03578 1.21322 1.08625 0.89269 0.95961 1.22795 0.96399 1.01087 1.03323 1.23035 0.98261 1.06462 0.95631 0.92337 0.92724 0.84377 0.83136 0.86377 0.84404 0.85707 0.87619 0.89024 0.89091 0.89177 0.89182 0.83863 0.90704 0.91190 0.91655 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.16 10.89 55.43 0.60 -22.56 16 2 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 3 Si 0.89 20.16 29.56 -169.99 -5.02 15.14 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.48 -12.50 9.01 -34.44 -0.31 -12.81 16 8 H 0.06 1.66 7.84 -52.49 -0.41 1.25 16 9 C 0.04 0.87 1.98 -155.62 -0.31 0.56 16 10 C 0.12 2.76 5.85 -4.04 -0.02 2.74 16 11 N -0.41 -8.59 2.55 -117.12 -0.30 -8.89 16 12 C 0.01 0.31 11.44 -16.75 -0.19 0.12 16 13 C -0.21 -3.87 10.21 -39.78 -0.41 -4.27 16 14 C -0.17 -2.95 5.14 -104.82 -0.54 -3.49 16 15 C 0.20 2.83 3.59 -68.87 -0.25 2.58 16 16 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 17 N -0.84 -10.49 8.41 -5.66 -0.05 -10.54 16 18 C -0.17 -2.14 5.69 -90.62 -0.52 -2.66 16 19 C -0.19 -2.04 9.64 -26.73 -0.26 -2.30 16 20 C -0.19 -1.95 9.93 -26.73 -0.27 -2.22 16 21 C -0.02 -0.35 10.40 -16.74 -0.17 -0.52 16 22 C -0.20 -4.27 9.67 -26.73 -0.26 -4.53 16 23 C -0.20 -4.30 9.89 -26.69 -0.26 -4.56 16 24 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 25 H 0.05 1.16 7.86 -51.93 -0.41 0.75 16 26 H 0.14 3.44 5.27 -51.93 -0.27 3.17 16 27 H 0.15 3.17 8.06 -52.48 -0.42 2.75 16 28 H 0.12 1.98 7.63 -52.49 -0.40 1.58 16 29 H 0.34 4.19 6.62 -39.29 -0.26 3.93 16 30 H 0.33 3.41 7.99 -39.29 -0.31 3.09 16 31 H 0.11 1.53 8.12 -51.93 -0.42 1.11 16 32 H 0.09 0.92 6.16 -51.93 -0.32 0.60 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.83 7.67 -51.93 -0.40 0.43 16 36 H 0.14 2.41 8.06 -52.49 -0.42 1.98 16 37 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.07 1.41 7.25 -51.93 -0.38 1.04 16 39 H 0.06 1.33 8.03 -51.93 -0.42 0.91 16 40 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 325.88 15.07 4.91 4.91 Total: -1.00 -26.23 325.88 -9.80 -36.03 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -6.10 Total: 15.65 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -3.85 Total: -29.74 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.26 Total: -41.98 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.23 -9.80 -36.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091835315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.434 kcal (2) G-P(sol) polarization free energy of solvation -26.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds