Wall clock time and date at job start Mon Mar 30 2020 06:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99981 * 2 1 4 4 H 1.48497 * 109.47464 * 275.00458 * 3 2 1 5 5 H 1.48499 * 109.46778 * 35.00274 * 3 2 1 6 6 H 1.48491 * 109.47062 * 155.00141 * 3 2 1 7 7 C 1.37878 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99978 * 191.96398 * 7 2 1 9 9 C 1.50701 * 119.99858 * 11.95500 * 7 2 1 10 10 C 1.53004 * 115.56077 * 39.54848 * 9 7 2 11 11 N 1.46496 * 109.47157 * 90.45241 * 10 9 7 12 12 C 1.36343 * 125.63848 * 274.91318 * 11 10 9 13 13 C 1.34849 * 108.22399 * 179.83063 * 12 11 10 14 14 C 1.40892 * 107.41326 * 0.41975 * 13 12 11 15 15 C 1.50699 * 126.29361 * 179.73458 * 14 13 12 16 16 H 1.09002 * 109.47534 * 203.82709 * 15 14 13 17 17 N 1.46897 * 109.46980 * 323.82853 * 15 14 13 18 18 C 1.52996 * 109.46907 * 83.82411 * 15 14 13 19 19 C 1.53004 * 117.50359 * 249.85715 * 18 15 14 20 20 C 1.52997 * 60.00081 * 252.51174 * 19 18 15 21 21 C 1.34859 * 107.42015 * 359.73812 * 14 13 12 22 22 C 1.53000 * 117.49920 * 185.23250 * 9 7 2 23 23 C 1.53000 * 60.03089 * 107.50208 * 22 9 7 24 24 H 0.96994 * 120.00349 * 354.98526 * 1 2 3 25 25 H 1.09001 * 109.46921 * 210.45373 * 10 9 7 26 26 H 1.08999 * 109.46577 * 330.45310 * 10 9 7 27 27 H 1.08008 * 125.88535 * 359.97438 * 12 11 10 28 28 H 1.07995 * 126.29497 * 180.15900 * 13 12 11 29 29 H 1.00898 * 111.00400 * 59.99874 * 17 15 14 30 30 H 1.00900 * 111.00287 * 183.95103 * 17 15 14 31 31 H 1.09002 * 115.55093 * 35.57327 * 18 15 14 32 32 H 1.09006 * 117.49277 * 0.02562 * 19 18 15 33 33 H 1.08993 * 117.49855 * 145.02103 * 19 18 15 34 34 H 1.08999 * 117.50069 * 252.50392 * 20 19 18 35 35 H 1.09000 * 117.51710 * 107.47704 * 20 19 18 36 36 H 1.07992 * 125.89367 * 180.02562 * 21 14 13 37 37 H 1.09000 * 117.49797 * 0.02562 * 22 9 7 38 38 H 1.08997 * 117.50320 * 215.00543 * 22 9 7 39 39 H 1.09006 * 117.49662 * 107.47643 * 23 22 9 40 40 H 1.09000 * 117.50624 * 252.47775 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1076 -1.3947 5 1 1.5034 2.6198 0.8031 6 1 3.5955 1.4120 0.5916 7 6 2.0046 -1.1940 -0.0005 8 1 3.0670 -1.2042 0.1933 9 6 1.2756 -2.4849 -0.2715 10 6 0.2022 -2.4210 -1.3599 11 7 0.8018 -2.7449 -2.6567 12 6 1.4388 -1.8640 -3.4796 13 6 1.8551 -2.5340 -4.5733 14 6 1.4522 -3.8759 -4.4244 15 6 1.6942 -4.9940 -5.4054 16 1 0.9485 -5.7751 -5.2574 17 7 1.5932 -4.4737 -6.7755 18 6 3.0921 -5.5745 -5.1822 19 6 4.1464 -5.3123 -6.2596 20 6 3.5415 -6.7091 -6.1051 21 6 0.8101 -3.9759 -3.2428 22 6 2.0695 -3.7860 -0.1377 23 6 1.0233 -3.4172 0.9161 24 1 -0.4850 0.8368 0.0734 25 1 -0.5866 -3.1388 -1.1348 26 1 -0.2198 -1.4166 -1.3954 27 1 1.5866 -0.8115 -3.2875 28 1 2.3942 -2.1177 -5.4114 29 1 2.2748 -3.7477 -6.9378 30 1 1.6877 -5.2162 -7.4521 31 1 3.4282 -5.6059 -4.1458 32 1 3.8441 -4.7258 -7.1273 33 1 5.1762 -5.1709 -5.9321 34 1 4.1735 -7.4867 -5.6760 35 1 2.8411 -7.0422 -6.8710 36 1 0.3775 -4.8759 -2.8315 37 1 3.1188 -3.7083 0.1466 38 1 1.8273 -4.5963 -0.8253 39 1 0.0926 -3.9846 0.9214 40 1 1.3844 -3.0972 1.8935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091835315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:39 Heat of formation + Delta-G solvation = 88.477430 kcal Electronic energy + Delta-G solvation = -19588.344035 eV Core-core repulsion = 16790.963216 eV Total energy + Delta-G solvation = -2797.380818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94571 -39.22606 -38.26901 -34.31057 -34.19872 -32.15675 -29.88522 -28.05274 -27.20442 -25.63223 -23.24066 -23.02150 -21.57151 -21.44200 -20.66992 -19.68239 -18.49616 -17.57264 -16.72927 -16.66380 -16.29914 -15.99713 -15.67023 -15.25586 -14.69978 -14.18885 -14.01944 -13.59959 -13.51265 -13.29110 -12.94908 -12.89022 -12.77275 -12.51098 -12.41253 -12.34754 -12.26228 -12.14726 -11.48762 -11.21037 -11.03130 -10.76806 -10.73697 -10.15341 -9.56205 -9.07998 -8.71430 -8.19309 -6.26506 1.36606 1.41582 1.49219 1.67864 2.27028 2.35958 2.41236 2.93818 2.96884 3.60021 3.88472 3.91483 4.05370 4.14377 4.16841 4.27754 4.37682 4.49043 4.51257 4.53518 4.67267 4.76437 4.77645 4.87620 4.91699 5.00415 5.06662 5.08258 5.20052 5.24901 5.27902 5.40208 5.48239 5.53755 5.72179 5.85098 6.28753 6.34526 6.42290 6.65004 6.73809 6.77170 6.83452 7.34562 8.82749 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.005415 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.591554 B = 5169.232726 C = 5512.891134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.034 3.966 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.045 0.955 9 C 0.011 3.989 10 C 0.133 3.867 11 N -0.421 5.421 12 C -0.019 4.019 13 C -0.201 4.201 14 C -0.163 4.163 15 C 0.208 3.792 16 H 0.083 0.917 17 N -0.839 5.839 18 C -0.187 4.187 19 C -0.184 4.184 20 C -0.168 4.168 21 C -0.031 4.031 22 C -0.182 4.182 23 C -0.190 4.190 24 H 0.267 0.733 25 H 0.064 0.936 26 H 0.113 0.887 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.343 0.657 30 H 0.346 0.654 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.162 0.838 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 -9.637 -10.847 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.167 4.167 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.010 3.990 10 C 0.012 3.988 11 N -0.093 5.093 12 C -0.152 4.152 13 C -0.225 4.225 14 C -0.170 4.170 15 C 0.096 3.904 16 H 0.100 0.900 17 N -0.370 5.370 18 C -0.208 4.208 19 C -0.221 4.221 20 C -0.205 4.205 21 C -0.163 4.163 22 C -0.219 4.219 23 C -0.229 4.229 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.130 0.870 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.180 0.820 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.385 -9.173 -10.359 14.040 hybrid contribution 1.475 0.767 0.617 1.773 sum 3.859 -8.406 -9.742 13.434 Atomic orbital electron populations 1.69781 1.06811 1.27869 1.49594 1.25508 0.95521 1.01581 0.94052 0.85717 0.78841 0.79840 0.78351 1.19927 1.20554 1.19948 1.20725 0.93993 0.90830 1.48230 0.93631 1.19324 0.96327 0.89469 0.93902 1.21673 0.93789 1.03880 0.79432 1.44262 1.41883 1.07684 1.15428 1.21741 1.04190 0.96042 0.93185 1.20574 1.08695 0.94143 0.99131 1.19227 1.06333 0.95032 0.96422 1.18953 0.92687 0.92051 0.86732 0.89952 1.58822 1.59105 1.16225 1.02878 1.23172 0.97130 1.04033 0.96417 1.23066 0.98166 0.99862 1.00994 1.23038 1.03573 0.91504 1.02417 1.21768 1.08987 0.89066 0.96450 1.22740 0.95911 1.00250 1.02994 1.23030 0.99177 1.05827 0.94837 0.92300 0.91766 0.86985 0.84703 0.84680 0.84163 0.83926 0.89759 0.87886 0.89193 0.88437 0.87535 0.82045 0.91248 0.89631 0.89837 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.99 10.89 21.45 0.23 -47.75 16 2 C 0.03 1.75 5.15 84.66 0.44 2.18 16 3 Si 0.95 41.94 29.56 68.60 2.03 43.97 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.50 -26.64 9.01 25.60 0.23 -26.41 16 8 H 0.05 2.50 7.84 -2.91 -0.02 2.48 16 9 C 0.01 0.51 1.98 -52.90 -0.10 0.41 16 10 C 0.13 6.07 5.85 86.38 0.50 6.58 16 11 N -0.42 -17.62 2.55 -524.47 -1.34 -18.96 16 12 C -0.02 -0.81 11.44 83.21 0.95 0.14 16 13 C -0.20 -7.30 10.21 22.14 0.23 -7.08 16 14 C -0.16 -5.46 5.14 -19.99 -0.10 -5.56 16 15 C 0.21 5.34 3.59 44.17 0.16 5.50 16 16 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 17 N -0.84 -18.68 8.41 -171.81 -1.44 -20.13 16 18 C -0.19 -4.37 5.69 -10.79 -0.06 -4.43 16 19 C -0.18 -3.55 9.64 30.59 0.29 -3.26 16 20 C -0.17 -2.93 9.93 30.59 0.30 -2.63 16 21 C -0.03 -1.12 10.40 83.21 0.87 -0.26 16 22 C -0.18 -7.71 9.67 30.59 0.30 -7.41 16 23 C -0.19 -8.27 9.89 30.62 0.30 -7.97 16 24 H 0.27 13.57 8.32 -92.71 -0.77 12.80 16 25 H 0.06 2.72 7.86 -2.39 -0.02 2.70 16 26 H 0.11 5.74 5.27 -2.39 -0.01 5.73 16 27 H 0.14 5.95 8.06 -2.91 -0.02 5.93 16 28 H 0.14 4.34 7.63 -2.91 -0.02 4.32 16 29 H 0.34 7.48 6.62 -89.70 -0.59 6.89 16 30 H 0.35 5.93 7.99 -89.69 -0.72 5.22 16 31 H 0.08 2.35 8.12 -2.39 -0.02 2.33 16 32 H 0.10 1.75 6.16 -2.38 -0.01 1.74 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 1.53 7.67 -2.39 -0.02 1.51 16 36 H 0.16 5.14 8.06 -2.91 -0.02 5.11 16 37 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.09 3.34 7.25 -2.39 -0.02 3.32 16 39 H 0.08 3.29 8.03 -2.38 -0.02 3.27 16 40 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -55.79 325.88 3.51 -52.28 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -0.27 Total: 40.78 kcal Atomic # 6 Polarization: -54.49 SS G_CDS: 4.30 Total: -50.19 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -2.55 Total: -86.83 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -55.79 3.51 -52.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091835315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.756 kcal (2) G-P(sol) polarization free energy of solvation -55.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds