Wall clock time and date at job start Mon Mar 30 2020 06:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86810 * 119.99494 * 2 1 4 4 H 1.48499 * 109.47030 * 84.70321 * 3 2 1 5 5 H 1.48498 * 109.47185 * 324.70086 * 3 2 1 6 6 H 1.48503 * 109.46653 * 204.69971 * 3 2 1 7 7 C 1.39866 * 120.00696 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99342 * 20.02180 * 7 2 1 9 9 C 1.41131 * 120.00144 * 200.02723 * 7 2 1 10 10 C 1.40879 * 120.15763 * 25.60632 * 9 7 2 11 11 C 1.36344 * 119.83413 * 179.73986 * 10 9 7 12 12 C 1.39567 * 120.16293 * 0.53497 * 11 10 9 13 13 N 1.38849 * 119.84533 * 179.73994 * 12 11 10 14 14 C 1.46505 * 119.99797 * 359.97438 * 13 12 11 15 15 H 1.09001 * 109.46995 * 35.00303 * 14 13 12 16 16 C 1.53006 * 109.47064 * 275.00130 * 14 13 12 17 17 C 1.52995 * 109.46754 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47289 * 60.00182 * 17 16 14 19 19 C 1.52998 * 109.46926 * 299.99754 * 18 17 16 20 20 H 1.09001 * 109.47322 * 299.99964 * 19 18 17 21 21 N 1.46904 * 109.47219 * 179.97438 * 19 18 17 22 22 C 1.52993 * 109.47299 * 60.00099 * 19 18 17 23 23 C 1.39574 * 120.31080 * 359.71970 * 12 11 10 24 24 C 1.36336 * 120.16352 * 0.02562 * 23 12 11 25 25 H 0.97007 * 119.99550 * 185.12402 * 1 2 3 26 26 H 1.07999 * 120.08211 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.91705 * 180.23510 * 11 10 9 28 28 H 0.96993 * 120.00040 * 179.97438 * 13 12 11 29 29 H 1.08997 * 109.46946 * 299.99670 * 16 14 13 30 30 H 1.08998 * 109.46731 * 60.00084 * 16 14 13 31 31 H 1.08999 * 109.47680 * 300.00113 * 17 16 14 32 32 H 1.09003 * 109.47388 * 179.97438 * 17 16 14 33 33 H 1.09003 * 109.47072 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47090 * 59.99859 * 18 17 16 35 35 H 1.00904 * 110.99851 * 59.99590 * 21 19 18 36 36 H 1.00898 * 111.00279 * 183.95311 * 21 19 18 37 37 H 1.08998 * 109.47376 * 179.97438 * 22 19 18 38 38 H 1.08999 * 109.47555 * 59.99671 * 22 19 18 39 39 H 1.08000 * 119.91373 * 179.97438 * 23 12 11 40 40 H 1.08004 * 120.08024 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6179 0.0000 4 1 2.3784 2.1112 1.3941 5 1 1.5008 2.6178 -0.8090 6 1 3.5920 1.4106 -0.5851 7 6 2.0085 -1.2112 0.0005 8 1 1.5174 -2.1184 -0.3193 9 6 3.3558 -1.2478 0.4191 10 6 3.8464 -0.2742 1.3113 11 6 5.1478 -0.3190 1.7155 12 6 5.9961 -1.3195 1.2390 13 7 7.3217 -1.3557 1.6508 14 6 7.8269 -0.3447 2.5830 15 1 7.0413 -0.0772 3.2896 16 6 8.2563 0.8993 1.8026 17 6 8.7833 1.9553 2.7762 18 6 9.9842 1.3919 3.5387 19 6 9.5548 0.1479 4.3190 20 1 8.7689 0.4154 5.0253 21 7 10.7079 -0.3935 5.0507 22 6 9.0278 -0.9081 3.3455 23 6 5.5182 -2.2842 0.3507 24 6 4.2179 -2.2548 -0.0580 25 1 -0.4850 -0.8368 0.0750 26 1 3.1922 0.5030 1.6778 27 1 5.5244 0.4245 2.4025 28 1 7.9131 -2.0503 1.3213 29 1 9.0419 0.6317 1.0960 30 1 7.4007 1.3009 1.2597 31 1 7.9975 2.2228 3.4825 32 1 9.0897 2.8415 2.2203 33 1 10.3599 2.1444 4.2320 34 1 10.7701 1.1245 2.8324 35 1 11.0749 0.2855 5.7006 36 1 10.4662 -1.2519 5.5226 37 1 8.7223 -1.7945 3.9013 38 1 9.8136 -1.1756 2.6391 39 1 6.1804 -3.0554 -0.0144 40 1 3.8496 -3.0018 -0.7457 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093212970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:38 Heat of formation + Delta-G solvation = 0.088283 kcal Electronic energy + Delta-G solvation = -19326.179447 eV Core-core repulsion = 16524.965788 eV Total energy + Delta-G solvation = -2801.213659 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.30491 -37.80184 -35.07933 -33.46733 -32.68984 -30.33352 -29.78695 -28.25721 -27.71517 -23.90569 -22.66755 -21.74140 -21.35629 -19.94106 -19.54388 -18.05347 -16.59297 -15.89607 -15.59205 -15.11861 -14.71738 -14.25770 -14.17308 -13.95137 -13.73479 -13.03169 -12.72440 -12.47445 -12.32951 -12.21235 -12.04045 -11.70013 -11.50153 -11.14357 -10.93370 -10.77964 -10.55150 -10.42371 -10.36792 -10.03786 -9.78385 -9.24010 -9.16356 -8.93817 -8.62303 -7.75035 -7.16203 -6.60776 -4.19127 2.73327 2.87558 3.28826 3.45327 3.63670 3.99767 4.16222 4.28459 4.63258 4.71164 4.85012 5.06282 5.13010 5.26744 5.38740 5.44652 5.46232 5.56611 5.59428 5.86603 5.97046 6.00817 6.03788 6.05032 6.12187 6.18662 6.36463 6.45250 6.55044 6.73984 6.90882 6.96274 7.17824 7.24014 7.36059 7.53365 7.71163 7.93179 8.01130 8.28279 8.51491 8.60351 8.78625 8.97755 10.19238 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.030893 B = 0.004880 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.125751 B = 5736.522165 C = 6295.710652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.042 3.958 3 Si 1.072 2.928 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.065 3.935 10 C -0.208 4.208 11 C -0.140 4.140 12 C 0.089 3.911 13 N -0.756 5.756 14 C 0.165 3.835 15 H 0.070 0.930 16 C -0.137 4.137 17 C -0.118 4.118 18 C -0.111 4.111 19 C 0.094 3.906 20 H 0.036 0.964 21 N -0.849 5.849 22 C -0.116 4.116 23 C -0.143 4.143 24 C -0.178 4.178 25 H 0.283 0.717 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.385 0.615 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.339 0.661 36 H 0.340 0.660 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.319 2.314 7.537 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.175 4.175 3 Si 0.899 3.101 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.554 4.554 8 H 0.090 0.910 9 C 0.061 3.939 10 C -0.228 4.228 11 C -0.162 4.162 12 C -0.008 4.008 13 N -0.389 5.389 14 C 0.058 3.942 15 H 0.088 0.912 16 C -0.176 4.176 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.018 4.018 20 H 0.054 0.946 21 N -0.378 5.378 22 C -0.155 4.155 23 C -0.165 4.165 24 C -0.198 4.198 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.217 0.783 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.318 3.991 6.837 19.041 hybrid contribution -0.347 -1.937 0.842 2.141 sum 16.971 2.054 7.679 18.740 Atomic orbital electron populations 1.70570 1.08185 1.32351 1.34356 1.27135 0.95633 1.04250 0.90498 0.83598 0.75959 0.73344 0.77154 1.20917 1.22163 1.18725 1.20432 0.96161 0.97047 1.41762 0.91034 1.17643 0.93260 0.91743 0.91222 1.20590 0.95517 1.03070 1.03617 1.19968 0.94183 0.99002 1.02998 1.17261 0.84199 0.98343 1.01026 1.43896 1.08804 1.33075 1.53155 1.20542 0.94506 0.88294 0.90878 0.91200 1.22094 1.01278 0.95874 0.98337 1.21501 0.97408 0.98280 0.98439 1.21556 0.98360 0.95885 0.99050 1.21276 0.90952 0.94692 0.94840 0.94616 1.58729 1.34827 1.09284 1.35009 1.21771 0.97681 0.97748 0.98306 1.19956 0.96259 0.99055 1.01203 1.20570 0.92882 1.02482 1.03861 0.90603 0.88210 0.88746 0.78250 0.92039 0.91199 0.92020 0.91743 0.92456 0.91219 0.84847 0.84706 0.91907 0.91053 0.89064 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.34 13.66 55.54 0.76 -22.58 16 2 C 0.04 1.16 5.40 -17.34 -0.09 1.07 16 3 Si 1.07 25.38 24.82 -169.99 -4.22 21.16 16 4 H -0.28 -6.34 6.64 56.52 0.38 -5.97 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.19 6.84 56.52 0.39 -5.80 16 7 C -0.52 -14.70 9.42 -37.88 -0.36 -15.06 16 8 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 9 C 0.06 1.70 5.20 -106.80 -0.56 1.15 16 10 C -0.21 -5.15 7.14 -39.26 -0.28 -5.43 16 11 C -0.14 -3.05 8.74 -39.77 -0.35 -3.40 16 12 C 0.09 1.81 6.65 -83.69 -0.56 1.25 16 13 N -0.76 -12.19 5.22 -52.03 -0.27 -12.46 16 14 C 0.17 2.27 2.14 -67.92 -0.15 2.12 16 15 H 0.07 1.06 6.45 -51.93 -0.33 0.72 16 16 C -0.14 -1.79 5.42 -26.73 -0.14 -1.93 16 17 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 18 C -0.11 -1.07 5.50 -26.73 -0.15 -1.21 16 19 C 0.09 0.93 3.25 -67.72 -0.22 0.71 16 20 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 21 N -0.85 -7.19 9.25 -4.67 -0.04 -7.23 16 22 C -0.12 -1.31 4.93 -26.73 -0.13 -1.45 16 23 C -0.14 -3.04 9.82 -39.77 -0.39 -3.43 16 24 C -0.18 -4.28 9.74 -39.26 -0.38 -4.66 16 25 H 0.28 7.75 8.73 -40.82 -0.36 7.40 16 26 H 0.10 2.47 4.27 -52.49 -0.22 2.24 16 27 H 0.09 1.85 6.04 -52.48 -0.32 1.53 16 28 H 0.38 5.58 8.60 -40.82 -0.35 5.23 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.07 7.66 -51.93 -0.40 0.67 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.34 2.34 9.04 -39.29 -0.36 1.99 16 36 H 0.34 2.56 8.99 -39.29 -0.35 2.20 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -28.54 311.88 -9.16 -37.71 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.18 Total: 10.39 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: -3.91 Total: -31.68 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.44 Total: -42.28 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.22 Total: 21.16 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.54 -9.16 -37.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093212970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.795 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds