Wall clock time and date at job start Mon Mar 30 2020 06:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86810 * 119.99494 * 2 1 4 4 H 1.48499 * 109.47030 * 84.70321 * 3 2 1 5 5 H 1.48498 * 109.47185 * 324.70086 * 3 2 1 6 6 H 1.48503 * 109.46653 * 204.69971 * 3 2 1 7 7 C 1.39866 * 120.00696 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99342 * 20.02180 * 7 2 1 9 9 C 1.41131 * 120.00144 * 200.02723 * 7 2 1 10 10 C 1.40879 * 120.15763 * 25.60632 * 9 7 2 11 11 C 1.36344 * 119.83413 * 179.73986 * 10 9 7 12 12 C 1.39567 * 120.16293 * 0.53497 * 11 10 9 13 13 N 1.38849 * 119.84533 * 179.73994 * 12 11 10 14 14 C 1.46505 * 119.99797 * 359.97438 * 13 12 11 15 15 H 1.09001 * 109.46995 * 35.00303 * 14 13 12 16 16 C 1.53006 * 109.47064 * 275.00130 * 14 13 12 17 17 C 1.52995 * 109.46754 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47289 * 60.00182 * 17 16 14 19 19 C 1.52998 * 109.46926 * 299.99754 * 18 17 16 20 20 H 1.09001 * 109.47322 * 299.99964 * 19 18 17 21 21 N 1.46904 * 109.47219 * 179.97438 * 19 18 17 22 22 C 1.52993 * 109.47299 * 60.00099 * 19 18 17 23 23 C 1.39574 * 120.31080 * 359.71970 * 12 11 10 24 24 C 1.36336 * 120.16352 * 0.02562 * 23 12 11 25 25 H 0.97007 * 119.99550 * 185.12402 * 1 2 3 26 26 H 1.07999 * 120.08211 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.91705 * 180.23510 * 11 10 9 28 28 H 0.96993 * 120.00040 * 179.97438 * 13 12 11 29 29 H 1.08997 * 109.46946 * 299.99670 * 16 14 13 30 30 H 1.08998 * 109.46731 * 60.00084 * 16 14 13 31 31 H 1.08999 * 109.47680 * 300.00113 * 17 16 14 32 32 H 1.09003 * 109.47388 * 179.97438 * 17 16 14 33 33 H 1.09003 * 109.47072 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47090 * 59.99859 * 18 17 16 35 35 H 1.00904 * 110.99851 * 59.99590 * 21 19 18 36 36 H 1.00898 * 111.00279 * 183.95311 * 21 19 18 37 37 H 1.08998 * 109.47376 * 179.97438 * 22 19 18 38 38 H 1.08999 * 109.47555 * 59.99671 * 22 19 18 39 39 H 1.08000 * 119.91373 * 179.97438 * 23 12 11 40 40 H 1.08004 * 120.08024 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6179 0.0000 4 1 2.3784 2.1112 1.3941 5 1 1.5008 2.6178 -0.8090 6 1 3.5920 1.4106 -0.5851 7 6 2.0085 -1.2112 0.0005 8 1 1.5174 -2.1184 -0.3193 9 6 3.3558 -1.2478 0.4191 10 6 3.8464 -0.2742 1.3113 11 6 5.1478 -0.3190 1.7155 12 6 5.9961 -1.3195 1.2390 13 7 7.3217 -1.3557 1.6508 14 6 7.8269 -0.3447 2.5830 15 1 7.0413 -0.0772 3.2896 16 6 8.2563 0.8993 1.8026 17 6 8.7833 1.9553 2.7762 18 6 9.9842 1.3919 3.5387 19 6 9.5548 0.1479 4.3190 20 1 8.7689 0.4154 5.0253 21 7 10.7079 -0.3935 5.0507 22 6 9.0278 -0.9081 3.3455 23 6 5.5182 -2.2842 0.3507 24 6 4.2179 -2.2548 -0.0580 25 1 -0.4850 -0.8368 0.0750 26 1 3.1922 0.5030 1.6778 27 1 5.5244 0.4245 2.4025 28 1 7.9131 -2.0503 1.3213 29 1 9.0419 0.6317 1.0960 30 1 7.4007 1.3009 1.2597 31 1 7.9975 2.2228 3.4825 32 1 9.0897 2.8415 2.2203 33 1 10.3599 2.1444 4.2320 34 1 10.7701 1.1245 2.8324 35 1 11.0749 0.2855 5.7006 36 1 10.4662 -1.2519 5.5226 37 1 8.7223 -1.7945 3.9013 38 1 9.8136 -1.1756 2.6391 39 1 6.1804 -3.0554 -0.0144 40 1 3.8496 -3.0018 -0.7457 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093212970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:38 Heat of formation + Delta-G solvation = -18.917141 kcal Electronic energy + Delta-G solvation = -19327.003584 eV Core-core repulsion = 16524.965788 eV Total energy + Delta-G solvation = -2802.037796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.53978 -39.30409 -36.53633 -35.07065 -33.84406 -31.85942 -31.49183 -29.59251 -28.75489 -25.68051 -23.99546 -23.03461 -22.71455 -21.38374 -20.67992 -20.04226 -18.14009 -17.09511 -16.36162 -16.27377 -15.92587 -15.90614 -15.57143 -15.34753 -15.17030 -14.46273 -14.34850 -14.09367 -13.68271 -13.63566 -13.27208 -12.96898 -12.77476 -12.54755 -12.45387 -12.09268 -11.95568 -11.73750 -11.57240 -11.39370 -11.37508 -11.10189 -10.95285 -10.38881 -9.59774 -9.57858 -9.24720 -8.33995 -6.22383 0.88034 1.00554 1.37980 1.57526 1.77785 2.24829 2.70107 2.75577 3.48399 3.59338 3.83149 3.96767 4.11930 4.23616 4.26400 4.31655 4.38977 4.50555 4.55078 4.56687 4.68190 4.71423 4.96593 5.03763 5.08411 5.13236 5.17834 5.21381 5.29453 5.38245 5.44589 5.46553 5.55305 5.62977 5.70968 5.96654 6.15438 6.26028 6.44474 6.59571 6.62399 6.86489 6.98127 7.22920 8.10709 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.030893 B = 0.004880 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.125751 B = 5736.522165 C = 6295.710652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.007 3.993 3 Si 1.106 2.894 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.039 0.961 9 C 0.029 3.971 10 C -0.210 4.210 11 C -0.153 4.153 12 C 0.123 3.877 13 N -0.744 5.744 14 C 0.161 3.839 15 H 0.061 0.939 16 C -0.133 4.133 17 C -0.114 4.114 18 C -0.106 4.106 19 C 0.097 3.903 20 H 0.035 0.965 21 N -0.851 5.851 22 C -0.107 4.107 23 C -0.150 4.150 24 C -0.183 4.183 25 H 0.273 0.727 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.398 0.602 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.350 0.650 36 H 0.347 0.653 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.270 3.126 8.970 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.204 4.204 3 Si 0.928 3.072 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.589 4.589 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.229 4.229 11 C -0.175 4.175 12 C 0.023 3.977 13 N -0.377 5.377 14 C 0.054 3.946 15 H 0.079 0.921 16 C -0.172 4.172 17 C -0.152 4.152 18 C -0.144 4.144 19 C -0.015 4.015 20 H 0.053 0.947 21 N -0.382 5.382 22 C -0.145 4.145 23 C -0.172 4.172 24 C -0.203 4.203 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.138 0.862 28 H 0.232 0.768 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.323 4.788 8.296 23.375 hybrid contribution -1.245 -2.329 0.476 2.684 sum 20.078 2.458 8.772 22.048 Atomic orbital electron populations 1.70640 1.08716 1.31657 1.37770 1.28186 0.95775 1.06669 0.89777 0.83183 0.74947 0.70754 0.78336 1.18823 1.21144 1.18739 1.20403 0.97636 0.96379 1.44500 0.94285 1.17772 0.92988 0.93719 0.92910 1.20693 0.96705 1.02430 1.03113 1.20205 0.93376 1.00240 1.03697 1.17443 0.85669 0.96300 0.98295 1.44031 1.07224 1.33774 1.52671 1.20733 0.95265 0.88136 0.90428 0.92126 1.22022 1.00495 0.96020 0.98679 1.21474 0.97854 0.97852 0.98064 1.21511 0.97615 0.96138 0.99097 1.21194 0.91430 0.94239 0.94633 0.94713 1.58685 1.34055 1.09912 1.35577 1.21657 0.96404 0.98125 0.98334 1.20244 0.95615 1.00169 1.01219 1.20746 0.93990 1.01806 1.03725 0.91694 0.88559 0.86240 0.76761 0.91755 0.93520 0.91949 0.90778 0.90925 0.91554 0.83647 0.84022 0.91822 0.90865 0.85682 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.83 13.66 21.82 0.30 -50.53 16 2 C 0.01 0.38 5.40 85.23 0.46 0.84 16 3 Si 1.11 51.84 24.82 68.60 1.70 53.54 16 4 H -0.26 -11.33 6.64 99.48 0.66 -10.67 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -12.15 6.84 99.48 0.68 -11.47 16 7 C -0.56 -32.97 9.42 23.37 0.22 -32.75 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 9 C 0.03 1.57 5.20 -21.27 -0.11 1.46 16 10 C -0.21 -10.25 7.14 22.47 0.16 -10.09 16 11 C -0.15 -6.35 8.74 22.15 0.19 -6.15 16 12 C 0.12 4.65 6.65 38.67 0.26 4.90 16 13 N -0.74 -21.20 5.22 -318.51 -1.66 -22.86 16 14 C 0.16 3.85 2.14 44.99 0.10 3.95 16 15 H 0.06 1.62 6.45 -2.39 -0.02 1.61 16 16 C -0.13 -3.06 5.42 30.59 0.17 -2.89 16 17 C -0.11 -2.04 5.92 30.59 0.18 -1.86 16 18 C -0.11 -1.63 5.50 30.59 0.17 -1.47 16 19 C 0.10 1.55 3.25 44.91 0.15 1.69 16 20 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 21 N -0.85 -11.32 9.25 -168.68 -1.56 -12.88 16 22 C -0.11 -2.01 4.93 30.59 0.15 -1.86 16 23 C -0.15 -6.04 9.82 22.15 0.22 -5.82 16 24 C -0.18 -8.75 9.74 22.48 0.22 -8.53 16 25 H 0.27 16.01 8.73 -92.70 -0.81 15.20 16 26 H 0.10 4.72 4.27 -2.91 -0.01 4.70 16 27 H 0.12 4.33 6.04 -2.91 -0.02 4.31 16 28 H 0.40 9.79 8.60 -92.71 -0.80 8.99 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.30 7.66 -2.39 -0.02 1.28 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.35 3.55 9.04 -89.69 -0.81 2.74 16 36 H 0.35 4.01 8.99 -89.70 -0.81 3.20 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 40 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -63.42 311.88 -0.16 -63.58 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -1.47 Total: 27.72 kcal Atomic # 6 Polarization: -61.10 SS G_CDS: 2.53 Total: -58.57 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -2.92 Total: -86.27 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.70 Total: 53.54 kcal Total: -63.42 -0.16 -63.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093212970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.661 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds