Wall clock time and date at job start Mon Mar 30 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86805 * 120.00020 * 2 1 4 4 H 1.48501 * 109.46954 * 270.00103 * 3 2 1 5 5 H 1.48501 * 109.46974 * 30.00306 * 3 2 1 6 6 H 1.48499 * 109.46975 * 150.00209 * 3 2 1 7 7 C 1.39865 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99940 * 163.04539 * 7 2 1 9 9 C 1.41131 * 120.00122 * 343.05580 * 7 2 1 10 10 C 1.40894 * 120.15169 * 334.53271 * 9 7 2 11 11 C 1.36340 * 119.83511 * 180.26292 * 10 9 7 12 12 C 1.39575 * 120.16091 * 359.44166 * 11 10 9 13 13 N 1.38850 * 119.84192 * 180.25937 * 12 11 10 14 14 C 1.46502 * 120.00145 * 0.30361 * 13 12 11 15 15 H 1.09003 * 109.46520 * 324.99044 * 14 13 12 16 16 C 1.52991 * 109.47613 * 84.99354 * 14 13 12 17 17 C 1.53008 * 109.47115 * 60.00000 * 16 14 13 18 18 C 1.53001 * 109.46844 * 59.99910 * 17 16 14 19 19 C 1.53000 * 109.47472 * 300.00081 * 18 17 16 20 20 H 1.09002 * 109.46803 * 300.00412 * 19 18 17 21 21 N 1.46895 * 109.47360 * 179.97438 * 19 18 17 22 22 C 1.53001 * 109.46943 * 204.99808 * 14 13 12 23 23 C 1.39573 * 120.31173 * 0.55963 * 12 11 10 24 24 C 1.36335 * 120.16197 * 359.72779 * 23 12 11 25 25 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.08185 * 359.97438 * 10 9 7 27 27 H 1.07996 * 119.91770 * 179.69861 * 11 10 9 28 28 H 0.97001 * 119.99827 * 180.29341 * 13 12 11 29 29 H 1.08993 * 109.47381 * 180.02562 * 16 14 13 30 30 H 1.09006 * 109.47294 * 300.00489 * 16 14 13 31 31 H 1.08998 * 109.46857 * 180.02562 * 17 16 14 32 32 H 1.09001 * 109.46829 * 300.00265 * 17 16 14 33 33 H 1.09007 * 109.46781 * 60.00311 * 18 17 16 34 34 H 1.08999 * 109.46582 * 179.97438 * 18 17 16 35 35 H 1.00900 * 110.99836 * 59.99663 * 21 19 18 36 36 H 1.00898 * 110.99903 * 183.95084 * 21 19 18 37 37 H 1.08998 * 109.47534 * 59.99181 * 22 14 13 38 38 H 1.08993 * 109.46880 * 179.97438 * 22 14 13 39 39 H 1.07998 * 119.91625 * 179.74270 * 23 12 11 40 40 H 1.08006 * 120.08043 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6527 0.7001 6 1 3.5406 1.4402 0.7000 7 6 2.0084 -1.2112 -0.0005 8 1 3.0532 -1.2314 -0.2733 9 6 1.3487 -2.4071 0.3551 10 6 0.2183 -2.3689 1.1952 11 6 -0.4108 -3.5286 1.5390 12 6 0.0555 -4.7505 1.0516 13 7 -0.5935 -5.9271 1.4017 14 6 -1.7687 -5.8834 2.2753 15 1 -1.6465 -5.0865 3.0089 16 6 -3.0191 -5.6160 1.4353 17 6 -3.1905 -6.7345 0.4055 18 6 -3.3387 -8.0749 1.1283 19 6 -2.0883 -8.3423 1.9684 20 1 -1.2139 -8.3747 1.3183 21 7 -2.2308 -9.6288 2.6629 22 6 -1.9169 -7.2237 2.9982 23 6 1.1747 -4.7959 0.2190 24 6 1.8172 -3.6447 -0.1284 25 1 -0.4850 0.8400 0.0004 26 1 -0.1462 -1.4238 1.5696 27 1 -1.2745 -3.5013 2.1868 28 1 -0.2688 -6.7779 1.0676 29 1 -3.8934 -5.5830 2.0853 30 1 -2.9135 -4.6611 0.9203 31 1 -4.0811 -6.5437 -0.1933 32 1 -2.3162 -6.7670 -0.2446 33 1 -4.2131 -8.0423 1.7784 34 1 -3.4613 -8.8716 0.3947 35 1 -2.3458 -10.3845 2.0042 36 1 -1.4464 -9.7985 3.2745 37 1 -1.0260 -7.4143 3.5966 38 1 -2.7910 -7.1910 3.6485 39 1 1.5326 -5.7453 -0.1512 40 1 2.6835 -3.6814 -0.7724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093212972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:41 Heat of formation + Delta-G solvation = 6.313782 kcal Electronic energy + Delta-G solvation = -19404.440742 eV Core-core repulsion = 16603.497041 eV Total energy + Delta-G solvation = -2800.943701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.37961 -37.43991 -34.72655 -33.34738 -32.28084 -30.06666 -29.46079 -28.02434 -27.74879 -24.28520 -22.66358 -21.69101 -20.86457 -20.43897 -18.57268 -17.18708 -16.49181 -15.67211 -15.27325 -15.13491 -14.94089 -14.45662 -14.19121 -13.81440 -12.92001 -12.77230 -12.46187 -12.33333 -12.13321 -11.96191 -11.71965 -11.58207 -11.46182 -11.25889 -10.98910 -10.80408 -10.54156 -10.47311 -10.25629 -9.98893 -9.67173 -9.25623 -9.18551 -8.83547 -8.47927 -7.46653 -6.60742 -6.34503 -4.00867 2.93848 3.12237 3.16110 3.20912 3.37518 4.07508 4.27782 4.36968 4.73991 4.79972 4.85488 5.18348 5.28974 5.39049 5.53819 5.58270 5.65540 5.79602 5.85752 5.98294 6.04824 6.11430 6.25028 6.29065 6.33273 6.42205 6.50120 6.55681 6.95934 6.99035 7.00909 7.22684 7.26685 7.38391 7.59443 7.71707 7.87128 8.17761 8.32596 8.53446 8.73513 8.83368 9.08846 9.18139 10.40660 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.043846 B = 0.004223 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.444025 B = 6628.766129 C = 6874.700101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.071 0.929 9 C 0.074 3.926 10 C -0.122 4.122 11 C -0.165 4.165 12 C 0.097 3.903 13 N -0.753 5.753 14 C 0.165 3.835 15 H 0.074 0.926 16 C -0.136 4.136 17 C -0.113 4.113 18 C -0.109 4.109 19 C 0.092 3.908 20 H 0.035 0.965 21 N -0.849 5.849 22 C -0.117 4.117 23 C -0.162 4.162 24 C -0.186 4.186 25 H 0.275 0.725 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.380 0.620 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.338 0.662 36 H 0.339 0.661 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 -12.294 3.671 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.500 4.500 8 H 0.089 0.911 9 C 0.071 3.929 10 C -0.142 4.142 11 C -0.187 4.187 12 C 0.000 4.000 13 N -0.388 5.388 14 C 0.057 3.943 15 H 0.092 0.908 16 C -0.175 4.175 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.019 4.019 20 H 0.052 0.948 21 N -0.379 5.379 22 C -0.155 4.155 23 C -0.184 4.184 24 C -0.206 4.206 25 H 0.086 0.914 26 H 0.135 0.865 27 H 0.107 0.893 28 H 0.214 0.786 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.403 -11.707 4.093 13.957 hybrid contribution 1.317 0.212 -0.774 1.542 sum -5.086 -11.495 3.318 13.001 Atomic orbital electron populations 1.69849 1.07314 1.28520 1.38033 1.25773 0.94652 1.00795 0.92779 0.86433 0.80622 0.81335 0.78943 1.19819 1.20359 1.18752 1.19349 0.97494 0.91288 1.41827 0.91062 1.17482 0.92479 0.91960 0.91015 1.20939 0.98066 0.96373 0.98831 1.20122 1.01830 0.91951 1.04784 1.17355 0.95314 0.85806 1.01542 1.44003 1.31936 1.05745 1.57140 1.20555 0.85891 0.96058 0.91768 0.90829 1.22038 0.97862 0.99321 0.98326 1.21407 1.01689 0.93920 0.98054 1.21541 0.97665 0.97275 0.98197 1.21309 0.96863 0.89274 0.94465 0.94754 1.58771 1.49672 1.04103 1.25336 1.21811 1.02223 0.93925 0.97576 1.19788 0.98081 0.96941 1.03632 1.20538 1.02594 0.92736 1.04758 0.91393 0.86475 0.89267 0.78635 0.92273 0.91093 0.92406 0.91588 0.91468 0.92774 0.85014 0.84831 0.91949 0.90552 0.89864 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.65 10.96 55.54 0.61 -21.04 16 2 C 0.07 1.95 5.15 -17.34 -0.09 1.86 16 3 Si 0.90 19.38 29.59 -169.99 -5.03 14.35 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.47 -12.84 9.03 -37.88 -0.34 -13.18 16 8 H 0.07 1.89 7.90 -52.49 -0.41 1.48 16 9 C 0.07 2.00 5.57 -106.79 -0.59 1.40 16 10 C -0.12 -3.20 8.63 -39.26 -0.34 -3.54 16 11 C -0.17 -3.82 8.76 -39.77 -0.35 -4.17 16 12 C 0.10 2.08 6.65 -83.69 -0.56 1.52 16 13 N -0.75 -12.67 4.37 -52.03 -0.23 -12.90 16 14 C 0.16 2.41 2.47 -67.93 -0.17 2.24 16 15 H 0.07 1.18 6.44 -51.93 -0.33 0.84 16 16 C -0.14 -1.93 5.53 -26.73 -0.15 -2.07 16 17 C -0.11 -1.44 5.77 -26.73 -0.15 -1.59 16 18 C -0.11 -1.20 5.50 -26.73 -0.15 -1.35 16 19 C 0.09 1.00 3.07 -67.71 -0.21 0.80 16 20 H 0.03 0.40 6.51 -51.93 -0.34 0.06 16 21 N -0.85 -7.93 9.25 -4.67 -0.04 -7.97 16 22 C -0.12 -1.40 5.15 -26.73 -0.14 -1.54 16 23 C -0.16 -3.64 9.82 -39.77 -0.39 -4.03 16 24 C -0.19 -4.64 9.74 -39.27 -0.38 -5.02 16 25 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 26 H 0.12 3.20 6.19 -52.49 -0.32 2.87 16 27 H 0.09 1.89 6.07 -52.49 -0.32 1.57 16 28 H 0.38 5.89 6.86 -40.82 -0.28 5.61 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.94 7.60 -51.93 -0.39 0.55 16 33 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.34 2.68 9.04 -39.29 -0.36 2.32 16 36 H 0.34 2.83 8.99 -39.29 -0.35 2.47 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 312.87 15.07 4.71 4.71 Total: -1.00 -27.79 312.87 -10.01 -37.81 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -6.03 Total: 13.73 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -4.00 Total: -28.70 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.34 Total: -41.91 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.79 -10.01 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093212972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.120 kcal (2) G-P(sol) polarization free energy of solvation -27.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds